AT4G28380

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013534
Physical Location & Seq
Reverse (-)
14039756 .. 14040931
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28380.1

Sequence Viewer

Length: 1176 bp
ATGGCTCTCTCTATAACATTTCCTGTCCTTATCTCAGTTCTTCTTTATCATTTCTCTTTAGTATCAACAGCAAAACATAGCCTTCACCACCACACAAGTCACTCCACAAACCCTAAACAGCATCTTCAGCAAGCGTACCGTGCACTTAAAGCATGGAAGAAGGTAATCTATTCTGATCCAAAGAACTTAACTGCAGATTGGGTCGGTCCCTCAGTCTGCAGCTACACTGGCATCTTCTGTGCCCCATCCCCTTCCAATCCAAACACTCTAGTTGTTGCCGGAATCGATCTCAATCATGGTGACATTGCTGGTTTCCTGCCTGAAGCCATTGGCCTTCTCTCTGACCTCGCTCTCATCCATCTCAATAGCAATCGCTTCTGTGGCATACTTCCTCGTTCGTTTGCCAATCTATCCTTACTCTATGAACTTGACCTCAGCAACAACCGCTTTGTAGGTCCTTTTCCGGATGTCGTCCTTGCACTCCCTTCTCTAAAGTACCTTGACCTTCGTTACAATGAGTTTGAAGGCCCCTTGCCTCCAAAACTCTTCAGCAATCCCCTCGATGCCATTTTTGTGAACAACAACCGGTTAACAAGCCTCATCCCCCGAGATTTCACAGGAACAACCGCCTCTGTTGTCGTCTTTGCCAACAATGATTTTAGCGGTTGTCTGCCTCCAACCATAGCCCGCTTTGCAGATACCTTAGAAGAGCTTCTCCTAATCAACTCAAGCTTATCTGGGTGTCTACCCCCCGAAGTCGGGTATCTCTACAAGCTAAGAGTCCTGGACATGAGCTACAACAGTTTAGTTGGTCCTGTACCTTACAGTCTCGCTGGGCTAGGCCATCTCGAGCAGCTAAATCTGGAACACAACATGTTCACTGGCACTGTCCCTCTTGGAGTCTGCGTTTTGCCCAGCTTGCTGAACGTTACCGTCTCTTACAACTATTTCAGTGAAGAAGAAGGTATCTGCAGGAACCTGACTTCCAGAGGAATAGCCATCGATGATCGCTACAACTGTCTGCCTGACAAACCGCTTCAGCGTCCCCAAAAAGTCTGTGATGCTGTACTTGAGCACCCCATAGACTGCTATGACCACGAATGCTCACCCATGGCTCCACTGGTTGCTCCATCTACCGCAGGACCTTCCATTGCTCCTGGTCCAGCTGACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

391

Amino Acids

42.7

Weight (kDa)

5.66

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 116 - 173 4.8e-08 Leucine rich repeat
LRR_8 PF13855 140 - 197 8.8e-06 Leucine rich repeat
LRR_8 PF13855 235 - 292 4.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28380
fragaria_vesca FvH4_6g26510
malus_domestica MD17G1236200.v1.1
prunus_persica Prupe.3G139500_v2.0.a1
pyrus_communis pycom17g23940
rosa_chinensis RchiOBHm_Chr2g0127651
rosa_laevigata RLG00000018945
rosa_multiflora Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii Rroxscaffold_2G00116700
rosa_rugosa Rorug02G0272100
rosa_samantha Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana Rw2G026310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 745
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 6 cut(s) 445, 627, 663, 688, 1034, 1137
AclI AACGTT 1 cut(s) 927
AclWI GGATC 1 cut(s) 170
AcuI CTGAAG 4 cut(s) 110, 342, 532, 1022
AfaI GTAC 4 cut(s) 137, 497, 819, 1068
AfiI CCNNNNNNNGG 2 cut(s) 758, 759
AflIII ACRYGT 1 cut(s) 873
AgeI ACCGGT 1 cut(s) 585
AgsI TTSAA 1 cut(s) 524
AjnI CCWGG 2 cut(s) 783, 1156
AloI GAACNNNNNNTCC 2 cut(s) 968, 1000
AluBI AGCT 8 cut(s) 222, 712, 732, 775, 795, 856, 918, 1166
AluI AGCT 8 cut(s) 222, 712, 732, 775, 795, 856, 918, 1166
Alw21I GWGCWC 2 cut(s) 145, 1077
Alw26I GTCTC 2 cut(s) 833, 940
Alw44I GTGCAC 1 cut(s) 141
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 2 cut(s) 606, 848
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 3 cut(s) 331, 526, 841
ApaLI GTGCAC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 219, 853
AsiGI ACCGGT 1 cut(s) 585
Asp700I GAANNNNTTC 1 cut(s) 711
AspS9I GGNCC 6 cut(s) 206, 455, 527, 812, 1142, 1160
AsuHPI GGTGA 3 cut(s) 77, 311, 1098
AvaI CYCGRG 2 cut(s) 606, 848
AvaII GGWCC 5 cut(s) 206, 455, 812, 1142, 1160
BaeGI GKGCMC 2 cut(s) 145, 244
Bbv12I GWGCWC 2 cut(s) 145, 1077
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 231, 865
BccI CCATC 5 cut(s) 253, 366, 852, 1007, 1138
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 2 cut(s) 785, 1158
BcoDI GTCTC 2 cut(s) 833, 940
BfaI CTAG 2 cut(s) 269, 839
BfmI CTRYAG 3 cut(s) 192, 217, 970
BisI GCNGC 2 cut(s) 220, 854
BlsI GCNGC 2 cut(s) 221, 855
Bme1390I CCNGG 2 cut(s) 785, 1158
Bme18I GGWCC 5 cut(s) 206, 455, 812, 1142, 1160
BmeT110I CYCGRG 2 cut(s) 606, 848
BmgT120I GGNCC 6 cut(s) 206, 455, 527, 812, 1142, 1160
BmiI GGNNCC 4 cut(s) 208, 529, 977, 1116
BmrFI CCNGG 2 cut(s) 785, 1158
BmsI GCATC 4 cut(s) 130, 240, 553, 1051
Bpu10I CCTNAGC 1 cut(s) 434
BpuEI CTTGAG 2 cut(s) 712, 1091
Bsa29I ATCGAT 2 cut(s) 285, 1002
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 1110
BsaWI WCCGGW 2 cut(s) 463, 585
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 2 cut(s) 758, 759
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 3 cut(s) 232, 886, 1125
Bse3DI GCAATG 2 cut(s) 303, 1149
Bse8I GATNNNNATC 1 cut(s) 291
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 2 cut(s) 785, 1158
BseCI ATCGAT 2 cut(s) 285, 1002
BseDI CCNNGG 1 cut(s) 1110
BseGI GGATG 4 cut(s) 245, 354, 472, 600
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 758, 759
BseMI GCAATG 2 cut(s) 303, 1149
BseMII CTCAG 3 cut(s) 48, 225, 448
BseNI ACTGG 3 cut(s) 232, 886, 1125
BseSI GKGCMC 2 cut(s) 145, 244
BseXI GCAGC 2 cut(s) 231, 865
BseYI CCCAGC 2 cut(s) 833, 914
BshFI GGCC 3 cut(s) 333, 528, 843
BshTI ACCGGT 1 cut(s) 585
BshVI ATCGAT 2 cut(s) 285, 1002
BsiHKAI GWGCWC 2 cut(s) 145, 1077
BsiHKCI CYCGRG 2 cut(s) 606, 848
BsiSI CCGG 3 cut(s) 279, 464, 586
BslFI GGGAC 3 cut(s) 192, 875, 1029
BslI CCNNNNNNNGG 2 cut(s) 758, 759
BsmAI GTCTC 2 cut(s) 833, 940
BsmBI CGTCTC 1 cut(s) 940
BsmFI GGGAC 3 cut(s) 192, 875, 1029
BsmI GAATGC 1 cut(s) 1106
BsnI GGCC 3 cut(s) 333, 528, 843
BsoBI CYCGRG 2 cut(s) 606, 848
Bsp1286I GDGCHC 3 cut(s) 145, 244, 1077
Bsp13I TCCGGA 1 cut(s) 463
Bsp143I GATC 3 cut(s) 175, 286, 1006
Bsp19I CCATGG 1 cut(s) 1110
BspACI CCGC 6 cut(s) 445, 627, 663, 688, 1034, 1137
BspANI GGCC 3 cut(s) 333, 528, 843
BspCNI CTCAG 3 cut(s) 47, 224, 447
BspDI ATCGAT 2 cut(s) 285, 1002
BspEI TCCGGA 1 cut(s) 463
BspLI GGNNCC 4 cut(s) 208, 529, 977, 1116
BspMAI CTGCAG 3 cut(s) 196, 221, 974
BspPI GGATC 1 cut(s) 170
BspQI GCTCTTC 1 cut(s) 702
BsrDI GCAATG 2 cut(s) 303, 1149
BsrFI RCCGGY 1 cut(s) 585
BsrI ACTGG 3 cut(s) 232, 886, 1125
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 1 cut(s) 1110
BssMI GATC 3 cut(s) 175, 286, 1006
BssT1I CCWWGG 1 cut(s) 1110
Bst2UI CCWGG 2 cut(s) 785, 1158
Bst4CI ACNGT 6 cut(s) 140, 803, 827, 889, 934, 1019
Bst6I CTCTTC 2 cut(s) 551, 702
BstC8I GCNNGC 3 cut(s) 132, 688, 920
BstDEI CTNAG 5 cut(s) 34, 211, 434, 703, 776
BstDSI CCRYGG 1 cut(s) 1110
BstF5I GGATG 4 cut(s) 245, 354, 472, 600
BstKTI GATC 3 cut(s) 178, 289, 1009
BstMAI GTCTC 2 cut(s) 833, 940
BstMBI GATC 3 cut(s) 175, 286, 1006
BstMWI GCNNNNNNNGC 8 cut(s) 127, 140, 149, 228, 381, 444, 692, 919
BstNI CCWGG 2 cut(s) 785, 1158
BstNSI RCATGY 1 cut(s) 877
BstSCI CCNGG 2 cut(s) 783, 1156
BstSFI CTRYAG 3 cut(s) 192, 217, 970
BstSLI GKGCMC 2 cut(s) 145, 244
BstV1I GCAGC 2 cut(s) 231, 865
Bsu15I ATCGAT 2 cut(s) 285, 1002
BsuRI GGCC 3 cut(s) 333, 528, 843
BsuTUI ATCGAT 2 cut(s) 285, 1002
BtgI CCRYGG 1 cut(s) 1110
BtsCI GGATG 4 cut(s) 245, 354, 472, 600
BtsIMutI CAGTG 5 cut(s) 225, 879, 885, 958, 1118
Cac8I GCNNGC 3 cut(s) 132, 688, 920
Cfr10I RCCGGY 1 cut(s) 585
Cfr13I GGNCC 6 cut(s) 206, 455, 527, 812, 1142, 1160
ClaI ATCGAT 2 cut(s) 285, 1002
CseI GACGC 1 cut(s) 1031
Csp6I GTAC 4 cut(s) 136, 496, 818, 1067
CspAI ACCGGT 1 cut(s) 585
CviAII CATG 5 cut(s) 153, 296, 790, 874, 1111
CviQI GTAC 4 cut(s) 136, 496, 818, 1067
DdeI CTNAG 5 cut(s) 34, 211, 434, 703, 776
DpnI GATC 3 cut(s) 177, 288, 1008
DpnII GATC 3 cut(s) 175, 286, 1006
Eam1104I CTCTTC 2 cut(s) 551, 702
EarI CTCTTC 2 cut(s) 551, 702
Eco130I CCWWGG 1 cut(s) 1110
Eco47I GGWCC 5 cut(s) 206, 455, 812, 1142, 1160
Eco57I CTGAAG 4 cut(s) 110, 342, 532, 1022
Eco88I CYCGRG 2 cut(s) 606, 848
EcoO109I RGGNCCY 3 cut(s) 455, 527, 1142
EcoRII CCWGG 2 cut(s) 783, 1156
EcoT14I CCWWGG 1 cut(s) 1110
ErhI CCWWGG 1 cut(s) 1110
Esp3I CGTCTC 1 cut(s) 940
FaeI CATG 5 cut(s) 156, 299, 793, 877, 1114
FaqI GGGAC 3 cut(s) 192, 875, 1029
FatI CATG 5 cut(s) 152, 295, 789, 873, 1110
FauI CCCGC 1 cut(s) 695
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 2 cut(s) 220, 854
FokI GGATG 4 cut(s) 232, 341, 479, 587
Fsp4HI GCNGC 2 cut(s) 220, 854
FspBI CTAG 2 cut(s) 269, 839
GluI GCNGC 2 cut(s) 220, 854
GsaI CCCAGC 2 cut(s) 837, 918
HaeIII GGCC 3 cut(s) 333, 528, 843
HapII CCGG 3 cut(s) 279, 464, 586
HgaI GACGC 1 cut(s) 1031
Hin1II CATG 5 cut(s) 156, 299, 793, 877, 1114
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HindIII AAGCTT 1 cut(s) 730
HinfI GANTC 3 cut(s) 282, 780, 900
HpaI GTTAAC 1 cut(s) 591
HpaII CCGG 3 cut(s) 279, 464, 586
HphI GGTGA 3 cut(s) 77, 311, 1098
Hpy166II GTNNAC 5 cut(s) 143, 577, 591, 746, 879
Hpy188I TCNGA 2 cut(s) 175, 343
Hpy188III TCNNGA 4 cut(s) 464, 848, 863, 987
Hpy8I GTNNAC 5 cut(s) 143, 577, 591, 746, 879
HpyAV CCTTC 9 cut(s) 92, 154, 261, 344, 495, 515, 518, 956, 1155
HpyCH4III ACNGT 6 cut(s) 140, 803, 827, 889, 934, 1019
HpyCH4IV ACGT 1 cut(s) 927
HpyCH4V TGCA 6 cut(s) 143, 194, 219, 479, 695, 972
HpyF10VI GCNNNNNNNGC 8 cut(s) 127, 140, 149, 228, 381, 444, 692, 919
HpyF3I CTNAG 5 cut(s) 34, 211, 434, 703, 776
HpySE526I ACGT 1 cut(s) 927
Hsp92II CATG 5 cut(s) 156, 299, 793, 877, 1114
Kpn2I TCCGGA 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 591
Kzo9I GATC 3 cut(s) 175, 286, 1006
LguI GCTCTTC 1 cut(s) 702
LmnI GCTCC 3 cut(s) 1120, 1132, 1159
Lsp1109I GCAGC 2 cut(s) 231, 865
LweI GCATC 4 cut(s) 130, 240, 553, 1051
MaeI CTAG 2 cut(s) 269, 839
MaeII ACGT 1 cut(s) 927
MaeIII GTNAC 4 cut(s) 98, 299, 509, 928
MalI GATC 3 cut(s) 177, 288, 1008
MboI GATC 3 cut(s) 175, 286, 1006
MboII GAAGA 8 cut(s) 32, 116, 169, 226, 538, 719, 968, 971
MhlI GDGCHC 3 cut(s) 145, 244, 1077
MlyI GAGTC 2 cut(s) 789, 909
MmeI TCCRAC 1 cut(s) 701
MroI TCCGGA 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 3 cut(s) 147, 188, 590
MslI CAYNNNNRTG 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 1166
MspI CCGG 3 cut(s) 279, 464, 586
MspR9I CCNGG 2 cut(s) 785, 1158
Mva1269I GAATGC 1 cut(s) 1106
MvaI CCWGG 2 cut(s) 785, 1158
MwoI GCNNNNNNNGC 8 cut(s) 127, 140, 149, 228, 381, 444, 692, 919
NcoI CCATGG 1 cut(s) 1110
NdeII GATC 3 cut(s) 175, 286, 1006
NlaIII CATG 5 cut(s) 156, 299, 793, 877, 1114
NlaIV GGNNCC 4 cut(s) 208, 529, 977, 1116
NmuCI GTSAC 2 cut(s) 98, 299
NspI RCATGY 1 cut(s) 877
PaeR7I CTCGAG 1 cut(s) 848
PciI ACATGT 1 cut(s) 873
PciSI GCTCTTC 1 cut(s) 702
PctI GAATGC 1 cut(s) 1106
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 1 cut(s) 282
PfoI TCCNGGA 1 cut(s) 783
PinAI ACCGGT 1 cut(s) 585
PkrI GCNGC 2 cut(s) 221, 855
PleI GAGTC 2 cut(s) 788, 908
PpsI GAGTC 2 cut(s) 788, 908
PpuMI RGGWCCY 2 cut(s) 455, 1142
PscI ACATGT 1 cut(s) 873
Psp1406I AACGTT 1 cut(s) 927
Psp5II RGGWCCY 2 cut(s) 455, 1142
Psp6I CCWGG 2 cut(s) 783, 1156
PspFI CCCAGC 2 cut(s) 833, 914
PspGI CCWGG 2 cut(s) 783, 1156
PspN4I GGNNCC 4 cut(s) 208, 529, 977, 1116
PspPI GGNCC 6 cut(s) 206, 455, 527, 812, 1142, 1160
PspPPI RGGWCCY 2 cut(s) 455, 1142
PstI CTGCAG 3 cut(s) 196, 221, 974
PvuII CAGCTG 1 cut(s) 1166
RsaI GTAC 4 cut(s) 137, 497, 819, 1068
RsaNI GTAC 4 cut(s) 136, 496, 818, 1067
RseI CAYNNNNRTG 1 cut(s) 572
SapI GCTCTTC 1 cut(s) 702
SaqAI TTAA 3 cut(s) 147, 188, 590
SatI GCNGC 2 cut(s) 220, 854
Sau3AI GATC 3 cut(s) 175, 286, 1006
Sau96I GGNCC 6 cut(s) 206, 455, 527, 812, 1142, 1160
SchI GAGTC 2 cut(s) 789, 909
ScrFI CCNGG 2 cut(s) 785, 1158
SduI GDGCHC 3 cut(s) 145, 244, 1077
SfaNI GCATC 4 cut(s) 130, 240, 553, 1051
SfcI CTRYAG 3 cut(s) 192, 217, 970
Sfr274I CTCGAG 1 cut(s) 848
SinI GGWCC 5 cut(s) 206, 455, 812, 1142, 1160
SlaI CTCGAG 1 cut(s) 848
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 3 cut(s) 727, 848, 1070
SmoI CTYRAG 3 cut(s) 727, 848, 1070
SsiI CCGC 6 cut(s) 445, 627, 663, 688, 1034, 1137
SspMI CTAG 2 cut(s) 269, 839
StyD4I CCNGG 2 cut(s) 783, 1156
StyI CCWWGG 1 cut(s) 1110
TaaI ACNGT 6 cut(s) 140, 803, 827, 889, 934, 1019
TaiI ACGT 1 cut(s) 930
TaqI TCGA 4 cut(s) 285, 561, 849, 1002
TaqII GACCGA 1 cut(s) 194
TatI WGTACW 1 cut(s) 1066
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 3 cut(s) 147, 188, 590
Tru9I TTAA 3 cut(s) 147, 188, 590
TscAI CASTG 5 cut(s) 232, 886, 892, 958, 1125
TseFI GTSAC 2 cut(s) 98, 299
TseI GCWGC 2 cut(s) 219, 853
Tsp45I GTSAC 2 cut(s) 98, 299
TspDTI ATGAA 1 cut(s) 438
TspRI CASTG 5 cut(s) 232, 886, 892, 958, 1125
VneI GTGCAC 1 cut(s) 141
VpaK11BI GGWCC 5 cut(s) 206, 455, 812, 1142, 1160
XceI RCATGY 1 cut(s) 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 1117
XhoI CTCGAG 1 cut(s) 848
XmiI GTMKAC 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 2 cut(s) 269, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.