RLG00000018945

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013534
Physical Location & Seq
Forward (+)
43303634 .. 43304857
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018945

Sequence Viewer

Length: 1224 bp
ATGGCTTTGTTTTCATTCACTTCCATTGCTAAATGTGCCAATGCCATCTCATTTATTCTCTTTGTTGTGTATGTCTCCAGTTTGTTCAACCATCTCAATCTGGCTTCTGTTGCTGCAAAACACAGCAGCCGCAATGGTGTATATGCTTCTCATCATCATGGCCATCACCGTGGCCGCCACCATAGTAACCATTCTGATTCTGCTGCAGCATCAGATGATCACTCCAACGCAAGATTGGACCGAGCCTTTCTTGCCCTCCAAGCATGGAAACGAGTGATTTACTCCGACCCAAACAACTTTACCACCAATTGGAAAGGTCCTTCAGTTTGCACTTACAAGGGTGTGTACTGTGCACCTGCTCCTGATGAGCCCAAAACCCAAGTTGTTGCTGGCATTGACCTTAATAAAGCTGACATAGCCGGATTCCTCCCAGACGAATTAGGCCTCTTGTCGGACCTTGCACTTATCCATCTGAACAGCAACCGCTTCTGCGGCATCCTCCCTCAGAGTTTGGCCAACCTCACACTCCTTAATGAGCTTGATCTCAGTAACAACAGATTTGTGGGTCCTTTTCCTACTGTAGTCCTCTCTCTTCCTAGTCTAAAATATCTTGATATTCGCTACAATGAGTTTGAAGGGCCAATACCTCCACAACTCTTCAGCAACATAGTACAACTAGATGCAATATTTGTAAATAACAACCGCTTTACCAGTATAAATATTCCAGCTTCTAATTTATTATCAACAGCCAGTGTGGTGGTGTTTGCTAACAATAAATTGGGCGGATGCCTTTCTCCGAGCATAGCTAGCTTTGCAGATACATTGGAGGAGCTTTTGCTAATCAACACAAGCTTGTCGGGTTGTCTTCCACAACAAGTTGGGTTTCTGTACAAATTGAGGGTGTTGGATGTGAGCAATAACAACCTGGTTGGTCCTATACCTTACAGCCTTGCAGGGCTAGCTCATTTGGAGCAACTAAATTTGGCCCACAATATGATGACTGGGATTGTGCCAGCTGGAGTTTGTAGTTTGCCAAATTTGGCAAATTTTACAATCTCTTATAATTATTTCTGCGAGGAAGACGGGATTTGTCAGAATTTGACAACATCCAAAGGAGGCAAGGTTGCATTTGATGATCGCCGTAACTGTGTGCCTGAGAGGCCATACCAGAGGACCCAGAAGGAATGTAATGCTGCTCTTGAGCACCCTGTCTACTGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

408

Amino Acids

44.54

Weight (kDa)

6.55

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 180 - 236 8.4e-07 Leucine rich repeat
LRR_8 PF13855 274 - 332 4e-07 Leucine rich repeat
LRR_8 PF13855 298 - 356 1.4e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28380
fragaria_vesca FvH4_6g26510
malus_domestica MD17G1236200.v1.1
prunus_persica Prupe.3G139500_v2.0.a1
pyrus_communis pycom17g23940
rosa_chinensis RchiOBHm_Chr2g0127651
rosa_laevigata RLG00000018945
rosa_multiflora Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii Rroxscaffold_2G00116700
rosa_rugosa Rorug02G0272100
rosa_samantha Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana Rw2G026310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1062
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 309
AccI GTMKAC 1 cut(s) 1212
AciI CCGC 6 cut(s) 130, 175, 484, 492, 703, 783
AcoI YGGCCR 3 cut(s) 160, 172, 513
AcsI RAATTY 4 cut(s) 979, 1036, 1045, 1096
AcuI CTGAAG 2 cut(s) 306, 643
AfaI GTAC 3 cut(s) 347, 672, 890
AfiI CCNNNNNNNGG 2 cut(s) 309, 451
AgsI TTSAA 2 cut(s) 88, 635
AjnI CCWGG 1 cut(s) 924
AluBI AGCT 9 cut(s) 410, 538, 728, 806, 810, 832, 852, 962, 1016
AluI AGCT 9 cut(s) 410, 538, 728, 806, 810, 832, 852, 962, 1016
Alw21I GWGCWC 2 cut(s) 355, 1206
Alw26I GTCTC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 351
AoxI GGCC 7 cut(s) 160, 172, 442, 513, 638, 984, 1160
ApaLI GTGCAC 1 cut(s) 351
ApeKI GCWGC 5 cut(s) 113, 126, 203, 206, 1193
ApoI RAATTY 4 cut(s) 979, 1036, 1045, 1096
AspS9I GGNCC 8 cut(s) 238, 317, 454, 566, 638, 932, 985, 1173
AsuHPI GGTGA 1 cut(s) 158
AsuNHI GCTAGC 2 cut(s) 806, 958
AvaII GGWCC 6 cut(s) 238, 317, 454, 566, 932, 1173
BaeGI GKGCMC 1 cut(s) 355
BalI TGGCCA 2 cut(s) 162, 515
BanII GRGCYC 1 cut(s) 372
BarI GAAGNNNNNNTAC 2 cut(s) 627, 659
BbsI GAAGAC 2 cut(s) 857, 1086
Bbv12I GWGCWC 2 cut(s) 355, 1206
BbvI GCAGC 5 cut(s) 100, 138, 190, 218, 1180
BccI CCATC 4 cut(s) 53, 99, 171, 477
BceAI ACGGC 1 cut(s) 1125
BciT130I CCWGG 1 cut(s) 926
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 4 cut(s) 597, 677, 807, 959
BfmI CTRYAG 2 cut(s) 204, 579
BfuAI ACCTGC 1 cut(s) 364
BglI GCCNNNNNGGC 1 cut(s) 1159
BisI GCNGC 8 cut(s) 114, 127, 130, 175, 204, 207, 493, 1194
BlsI GCNGC 8 cut(s) 115, 128, 131, 176, 205, 208, 494, 1195
Bme1390I CCNGG 1 cut(s) 926
Bme18I GGWCC 6 cut(s) 238, 317, 454, 566, 932, 1173
BmgT120I GGNCC 8 cut(s) 238, 317, 454, 566, 638, 932, 985, 1173
BmiI GGNNCC 2 cut(s) 567, 1175
BmrFI CCNGG 1 cut(s) 926
BmrI ACTGGG 1 cut(s) 1011
BmsI GCATC 4 cut(s) 218, 504, 670, 776
BmtI GCTAGC 2 cut(s) 810, 962
BmuI ACTGGG 1 cut(s) 1011
BpiI GAAGAC 2 cut(s) 857, 1086
BpmI CTGGAG 2 cut(s) 61, 1038
BpuEI CTTGAG 1 cut(s) 1220
BsaJI CCNNGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 1107, 1137
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 451
Bse1I ACTGG 4 cut(s) 78, 711, 750, 1006
Bse3DI GCAATG 2 cut(s) 24, 139
BseBI CCWGG 1 cut(s) 926
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 4 cut(s) 495, 791, 913, 1106
BseLI CCNNNNNNNGG 2 cut(s) 309, 451
BseMI GCAATG 2 cut(s) 24, 139
BseMII CTCAG 3 cut(s) 518, 559, 1146
BseNI ACTGG 4 cut(s) 78, 711, 750, 1006
BseRI GAGGAG 1 cut(s) 842
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 5 cut(s) 100, 138, 190, 218, 1180
BshFI GGCC 7 cut(s) 162, 174, 444, 515, 640, 986, 1162
BsiHKAI GWGCWC 2 cut(s) 355, 1206
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 2 cut(s) 309, 451
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 7 cut(s) 162, 174, 444, 515, 640, 986, 1162
Bsp1286I GDGCHC 3 cut(s) 355, 372, 1206
Bsp1407I TGTACA 1 cut(s) 888
Bsp143I GATC 3 cut(s) 217, 541, 1135
BspACI CCGC 6 cut(s) 130, 175, 484, 492, 703, 783
BspANI GGCC 7 cut(s) 162, 174, 444, 515, 640, 986, 1162
BspCNI CTCAG 3 cut(s) 517, 558, 1147
BspLI GGNNCC 2 cut(s) 567, 1175
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 364
BspOI GCTAGC 2 cut(s) 810, 962
BsrDI GCAATG 2 cut(s) 24, 139
BsrGI TGTACA 1 cut(s) 888
BsrI ACTGG 4 cut(s) 78, 711, 750, 1006
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 217, 541, 1135
Bst2UI CCWGG 1 cut(s) 926
Bst4CI ACNGT 4 cut(s) 170, 350, 580, 1148
Bst6I CTCTTC 2 cut(s) 597, 662
BstAUI TGTACA 1 cut(s) 888
BstC8I GCNNGC 4 cut(s) 391, 808, 960, 1014
BstDEI CTNAG 3 cut(s) 504, 545, 1155
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 4 cut(s) 495, 791, 913, 1106
BstKTI GATC 3 cut(s) 220, 544, 1138
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 3 cut(s) 217, 541, 1135
BstNI CCWGG 1 cut(s) 926
BstSCI CCNGG 1 cut(s) 924
BstSFI CTRYAG 2 cut(s) 204, 579
BstSLI GKGCMC 1 cut(s) 355
BstV1I GCAGC 5 cut(s) 100, 138, 190, 218, 1180
BstV2I GAAGAC 2 cut(s) 857, 1086
BstXI CCANNNNNNTGG 2 cut(s) 170, 757
BsuRI GGCC 7 cut(s) 162, 174, 444, 515, 640, 986, 1162
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 4 cut(s) 495, 791, 913, 1106
BtsIMutI CAGTG 1 cut(s) 757
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 4 cut(s) 391, 808, 960, 1014
Cfr13I GGNCC 8 cut(s) 238, 317, 454, 566, 638, 932, 985, 1173
CsiI ACCWGGT 1 cut(s) 924
Csp6I GTAC 3 cut(s) 346, 671, 889
CviAII CATG 2 cut(s) 158, 264
CviQI GTAC 3 cut(s) 346, 671, 889
DdeI CTNAG 3 cut(s) 504, 545, 1155
DpnI GATC 3 cut(s) 219, 543, 1137
DpnII GATC 3 cut(s) 217, 541, 1135
EaeI YGGCCR 3 cut(s) 160, 172, 513
Eam1104I CTCTTC 2 cut(s) 597, 662
EarI CTCTTC 2 cut(s) 597, 662
EciI GGCGGA 1 cut(s) 798
Eco147I AGGCCT 1 cut(s) 444
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 6 cut(s) 238, 317, 454, 566, 932, 1173
Eco57I CTGAAG 2 cut(s) 306, 643
EcoO109I RGGNCCY 3 cut(s) 317, 566, 1173
EcoRII CCWGG 1 cut(s) 924
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 2 cut(s) 161, 267
FatI CATG 2 cut(s) 157, 263
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 1212
Fnu4HI GCNGC 8 cut(s) 114, 127, 130, 175, 204, 207, 493, 1194
FokI GGATG 4 cut(s) 482, 798, 920, 1093
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 8 cut(s) 114, 127, 130, 175, 204, 207, 493, 1194
FspBI CTAG 4 cut(s) 597, 677, 807, 959
GluI GCNGC 8 cut(s) 114, 127, 130, 175, 204, 207, 493, 1194
GsuI CTGGAG 2 cut(s) 61, 1038
HaeIII GGCC 7 cut(s) 162, 174, 444, 515, 640, 986, 1162
HapII CCGG 1 cut(s) 420
Hin1II CATG 2 cut(s) 161, 267
HindIII AAGCTT 1 cut(s) 850
HinfI GANTC 2 cut(s) 197, 423
HpaII CCGG 1 cut(s) 420
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 346, 353, 1213
Hpy188I TCNGA 8 cut(s) 196, 214, 286, 454, 474, 507, 798, 1095
Hpy188III TCNNGA 3 cut(s) 362, 611, 1199
Hpy8I GTNNAC 3 cut(s) 346, 353, 1213
HpyAV CCTTC 3 cut(s) 330, 629, 1174
HpyCH4III ACNGT 4 cut(s) 170, 350, 580, 1148
HpyCH4V TGCA 9 cut(s) 116, 206, 330, 353, 461, 683, 815, 953, 1127
HpyF3I CTNAG 3 cut(s) 504, 545, 1155
Hsp92II CATG 2 cut(s) 161, 267
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 3 cut(s) 217, 541, 1135
LmnI GCTCC 3 cut(s) 364, 829, 970
Lsp1109I GCAGC 5 cut(s) 100, 138, 190, 218, 1180
LweI GCATC 4 cut(s) 218, 504, 670, 776
MabI ACCWGGT 1 cut(s) 924
MaeI CTAG 4 cut(s) 597, 677, 807, 959
MaeIII GTNAC 3 cut(s) 185, 548, 1142
MalI GATC 3 cut(s) 219, 543, 1137
MboI GATC 3 cut(s) 217, 541, 1135
MboII GAAGA 4 cut(s) 584, 649, 857, 1091
MfeI CAATTG 1 cut(s) 307
MhlI GDGCHC 3 cut(s) 355, 372, 1206
MlsI TGGCCA 2 cut(s) 162, 515
MluNI TGGCCA 2 cut(s) 162, 515
MmeI TCCRAC 4 cut(s) 249, 309, 432, 885
Mox20I TGGCCA 2 cut(s) 162, 515
MscI TGGCCA 2 cut(s) 162, 515
MseI TTAA 3 cut(s) 402, 531, 1222
MslI CAYNNNNRTG 2 cut(s) 156, 168
Msp20I TGGCCA 2 cut(s) 162, 515
MspA1I CMGCKG 1 cut(s) 1016
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 926
MunI CAATTG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 926
NdeII GATC 3 cut(s) 217, 541, 1135
NheI GCTAGC 2 cut(s) 806, 958
NlaIII CATG 2 cut(s) 161, 267
NlaIV GGNNCC 2 cut(s) 567, 1175
PaqCI CACCTGC 1 cut(s) 364
PceI AGGCCT 1 cut(s) 444
PfeI GAWTC 2 cut(s) 197, 423
PflMI CCANNNNNTGG 1 cut(s) 309
PkrI GCNGC 8 cut(s) 115, 128, 131, 176, 205, 208, 494, 1195
PpuMI RGGWCCY 3 cut(s) 317, 566, 1173
PsiI TTATAA 1 cut(s) 1062
Psp5II RGGWCCY 3 cut(s) 317, 566, 1173
Psp6I CCWGG 1 cut(s) 924
PspGI CCWGG 1 cut(s) 924
PspN4I GGNNCC 2 cut(s) 567, 1175
PspPI GGNCC 8 cut(s) 238, 317, 454, 566, 638, 932, 985, 1173
PspPPI RGGWCCY 3 cut(s) 317, 566, 1173
PstI CTGCAG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 1016
RsaI GTAC 3 cut(s) 347, 672, 890
RsaNI GTAC 3 cut(s) 346, 671, 889
RseI CAYNNNNRTG 2 cut(s) 156, 168
SaqAI TTAA 3 cut(s) 402, 531, 1222
SatI GCNGC 8 cut(s) 114, 127, 130, 175, 204, 207, 493, 1194
Sau3AI GATC 3 cut(s) 217, 541, 1135
Sau96I GGNCC 8 cut(s) 238, 317, 454, 566, 638, 932, 985, 1173
ScrFI CCNGG 1 cut(s) 926
SduI GDGCHC 3 cut(s) 355, 372, 1206
SexAI ACCWGGT 1 cut(s) 924
SfaNI GCATC 4 cut(s) 218, 504, 670, 776
SfcI CTRYAG 2 cut(s) 204, 579
SinI GGWCC 6 cut(s) 238, 317, 454, 566, 932, 1173
SmiMI CAYNNNNRTG 2 cut(s) 156, 168
SmlI CTYRAG 1 cut(s) 1199
SmoI CTYRAG 1 cut(s) 1199
SseBI AGGCCT 1 cut(s) 444
SsiI CCGC 6 cut(s) 130, 175, 484, 492, 703, 783
SspI AATATT 2 cut(s) 687, 721
SspMI CTAG 4 cut(s) 597, 677, 807, 959
StuI AGGCCT 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 924
TaaI ACNGT 4 cut(s) 170, 350, 580, 1148
TaqII GACCGA 1 cut(s) 255
TatI WGTACW 3 cut(s) 345, 670, 888
TauI GCSGC 3 cut(s) 132, 177, 495
TfiI GAWTC 2 cut(s) 197, 423
Tru1I TTAA 3 cut(s) 402, 531, 1222
Tru9I TTAA 3 cut(s) 402, 531, 1222
TscAI CASTG 1 cut(s) 757
TseI GCWGC 5 cut(s) 113, 126, 203, 206, 1193
TspRI CASTG 1 cut(s) 757
Van91I CCANNNNNTGG 1 cut(s) 309
VneI GTGCAC 1 cut(s) 351
VpaK11BI GGWCC 6 cut(s) 238, 317, 454, 566, 932, 1173
XapI RAATTY 4 cut(s) 979, 1036, 1045, 1096
XcmI CCANNNNNNNNNTGG 2 cut(s) 232, 386
XmiI GTMKAC 1 cut(s) 1212
XspI CTAG 4 cut(s) 597, 677, 807, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.