Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8443749.1

Orthogroup ID

OG0013534

Physical Location & Seq

Genomic Coordinates Reverse (-)

654 .. 1619

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8443749.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

caagcatggaaacgagtgatttactccgacccaaataactttaccaccaattggaaaggtccttcagtttgcacttacaagggtgtgtactgtgcacctgctcctgatgagcccaaaacccaagttgttgctggcattgaccttaataaaggtgacatagccggattcctcccagacgaattaggcctcttgtcggaccttgcacttatccatctgaacagcaaccgcttttgcggcatcctccctcagagtttggccaaccttacactccttaatgagcttgatctcagtaacaacagatttgtgggtccttttcctactgtagtcctctctcttcctagtctaaaatatcttgatattcgctacaatgagtttgaagggacaatacctccacaactcttcagcaacatagtacaactagatgcaatatttgtaaataacaaccgctttaccagtataaatattgcagcttctaatttatcatcatcagccagtgtggtggtgtttgctaacaataaattgggcggatgcctttctccgagcatagcaaactttgcagatacattggaggagcttttgctaatcaacacaagcttgtcggggtgtcttccacaacaagttgggtttctgtacaaattgagggtgttggatgtgagcaataacaacctggttggtcctataccttacagccttgcaggtctagctcatttggagcaactaaatttggccaacaatatgatgactgggattgtgccagctggagtttgtagtttgccaaatttggcaaattttacaatctcttataattatttctgcgaggaagacgggatttgtcagaatttgacaacatccaaaggaggcaagactgcatttgatgatcgccgtaactgtgtgcctgagaggccataccagaggtcccagaaggaatgtaatgctgctcttgagcaccctgtttactgcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8

Protein Analysis

321

Amino Acids

35.09

Weight (kDa)

5.13

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28380
fragaria_vesca	FvH4_6g26510
malus_domestica	MD17G1236200.v1.1
prunus_persica	Prupe.3G139500_v2.0.a1
pyrus_communis	pycom17g23940
rosa_chinensis	RchiOBHm_Chr2g0127651
rosa_laevigata	RLG00000018945
rosa_multiflora	Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii	Rroxscaffold_2G00116700
rosa_rugosa	Rorug02G0272100
rosa_samantha	Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana	Rw2G026310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AarI	CACCTGC	1 cut(s)	106
Acc36I	ACCTGC	2 cut(s)	106, 686
AccB7I	CCANNNNNTGG	1 cut(s)	51
AciI	CCGC	4 cut(s)	226, 234, 445, 525
AcoI	YGGCCR	2 cut(s)	255, 726
AcsI	RAATTY	4 cut(s)	721, 778, 787, 838
AcuI	CTGAAG	2 cut(s)	48, 385
AfaI	GTAC	3 cut(s)	89, 414, 632
AfiI	CCNNNNNNNGG	2 cut(s)	51, 193
AgsI	TTSAA	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	6 cut(s)	280, 470, 574, 594, 704, 758
AluI	AGCT	6 cut(s)	280, 470, 574, 594, 704, 758
Alw21I	GWGCWC	2 cut(s)	97, 948
Alw44I	GTGCAC	1 cut(s)	93
AoxI	GGCC	4 cut(s)	184, 255, 726, 902
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	467, 935
ApoI	RAATTY	4 cut(s)	721, 778, 787, 838
AspS9I	GGNCC	5 cut(s)	59, 196, 308, 674, 915
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	5 cut(s)	59, 196, 308, 674, 915
BaeGI	GKGCMC	1 cut(s)	97
BalI	TGGCCA	2 cut(s)	257, 728
BanII	GRGCYC	1 cut(s)	114
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BbsI	GAAGAC	2 cut(s)	599, 828
Bbv12I	GWGCWC	2 cut(s)	97, 948
BbvI	GCAGC	2 cut(s)	479, 922
BccI	CCATC	1 cut(s)	219
BceAI	ACGGC	1 cut(s)	867
BciT130I	CCWGG	1 cut(s)	668
BfaI	CTAG	3 cut(s)	339, 419, 701
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	2 cut(s)	106, 686
BglI	GCCNNNNNGGC	1 cut(s)	901
BisI	GCNGC	3 cut(s)	235, 468, 936
BlsI	GCNGC	3 cut(s)	236, 469, 937
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	5 cut(s)	59, 196, 308, 674, 915
BmgT120I	GGNCC	5 cut(s)	59, 196, 308, 674, 915
BmiI	GGNNCC	2 cut(s)	309, 917
BmrFI	CCNGG	1 cut(s)	668
BmrI	ACTGGG	1 cut(s)	753
BmsI	GCATC	3 cut(s)	246, 412, 518
BmuI	ACTGGG	1 cut(s)	753
BpiI	GAAGAC	2 cut(s)	599, 828
BpmI	CTGGAG	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	962
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 193
Bse1I	ACTGG	3 cut(s)	453, 492, 748
BseBI	CCWGG	1 cut(s)	668
BseGI	GGATG	4 cut(s)	237, 533, 655, 848
BseLI	CCNNNNNNNGG	2 cut(s)	51, 193
BseMII	CTCAG	3 cut(s)	260, 301, 888
BseNI	ACTGG	3 cut(s)	453, 492, 748
BseRI	GAGGAG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	479, 922
BshFI	GGCC	4 cut(s)	186, 257, 728, 904
BsiHKAI	GWGCWC	2 cut(s)	97, 948
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	394, 901
BslI	CCNNNNNNNGG	2 cut(s)	51, 193
BsmFI	GGGAC	2 cut(s)	394, 901
BsnI	GGCC	4 cut(s)	186, 257, 728, 904
Bsp1286I	GDGCHC	3 cut(s)	97, 114, 948
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	283, 877
BspACI	CCGC	4 cut(s)	226, 234, 445, 525
BspANI	GGCC	4 cut(s)	186, 257, 728, 904
BspCNI	CTCAG	3 cut(s)	259, 300, 889
BspLI	GGNNCC	2 cut(s)	309, 917
BspMI	ACCTGC	2 cut(s)	106, 686
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	3 cut(s)	453, 492, 748
BssMI	GATC	2 cut(s)	283, 877
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	3 cut(s)	92, 322, 890
Bst6I	CTCTTC	2 cut(s)	339, 404
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	2 cut(s)	133, 756
BstDEI	CTNAG	3 cut(s)	246, 287, 897
BstF5I	GGATG	4 cut(s)	237, 533, 655, 848
BstKTI	GATC	2 cut(s)	286, 880
BstMBI	GATC	2 cut(s)	283, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	234, 554, 701, 901
BstNI	CCWGG	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	479, 922
BstV2I	GAAGAC	2 cut(s)	599, 828
BstXI	CCANNNNNNTGG	1 cut(s)	499
BsuRI	GGCC	4 cut(s)	186, 257, 728, 904
BtsCI	GGATG	4 cut(s)	237, 533, 655, 848
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	2 cut(s)	106, 686
Cac8I	GCNNGC	2 cut(s)	133, 756
Cfr13I	GGNCC	5 cut(s)	59, 196, 308, 674, 915
CsiI	ACCWGGT	1 cut(s)	666
Csp6I	GTAC	3 cut(s)	88, 413, 631
CviAII	CATG	1 cut(s)	6
CviQI	GTAC	3 cut(s)	88, 413, 631
DdeI	CTNAG	3 cut(s)	246, 287, 897
DpnI	GATC	2 cut(s)	285, 879
DpnII	GATC	2 cut(s)	283, 877
EaeI	YGGCCR	2 cut(s)	255, 726
Eam1104I	CTCTTC	2 cut(s)	339, 404
EarI	CTCTTC	2 cut(s)	339, 404
EciI	GGCGGA	1 cut(s)	540
Eco147I	AGGCCT	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	5 cut(s)	59, 196, 308, 674, 915
Eco57I	CTGAAG	2 cut(s)	48, 385
EcoO109I	RGGNCCY	3 cut(s)	59, 308, 915
EcoRII	CCWGG	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	9
FaiI	YATR	9 cut(s)	7, 158, 410, 458, 545, 680, 737, 804, 907
FaqI	GGGAC	2 cut(s)	394, 901
FatI	CATG	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	235, 468, 936
FokI	GGATG	4 cut(s)	224, 540, 662, 835
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	235, 468, 936
FspBI	CTAG	3 cut(s)	339, 419, 701
GluI	GCNGC	3 cut(s)	235, 468, 936
GsuI	CTGGAG	1 cut(s)	780
HaeIII	GGCC	4 cut(s)	186, 257, 728, 904
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	592
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	88, 95, 955
Hpy188I	TCNGA	6 cut(s)	28, 196, 216, 249, 540, 837
Hpy188III	TCNNGA	3 cut(s)	104, 353, 941
Hpy8I	GTNNAC	3 cut(s)	88, 95, 955
HpyAV	CCTTC	3 cut(s)	72, 371, 916
HpyCH4III	ACNGT	3 cut(s)	92, 322, 890
HpyCH4V	TGCA	8 cut(s)	72, 95, 203, 425, 467, 557, 695, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	234, 554, 701, 901
HpyF3I	CTNAG	3 cut(s)	246, 287, 897
Hsp92II	CATG	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	283, 877
LmnI	GCTCC	3 cut(s)	106, 571, 712
Lsp1109I	GCAGC	2 cut(s)	479, 922
LweI	GCATC	3 cut(s)	246, 412, 518
MabI	ACCWGGT	1 cut(s)	666
MaeI	CTAG	3 cut(s)	339, 419, 701
MaeIII	GTNAC	3 cut(s)	152, 290, 884
MalI	GATC	2 cut(s)	285, 879
MboI	GATC	2 cut(s)	283, 877
MboII	GAAGA	4 cut(s)	326, 391, 599, 833
MfeI	CAATTG	1 cut(s)	49
MhlI	GDGCHC	3 cut(s)	97, 114, 948
MlsI	TGGCCA	2 cut(s)	257, 728
MluNI	TGGCCA	2 cut(s)	257, 728
MmeI	TCCRAC	3 cut(s)	51, 174, 627
Mox20I	TGGCCA	2 cut(s)	257, 728
MscI	TGGCCA	2 cut(s)	257, 728
MseI	TTAA	3 cut(s)	144, 273, 964
Msp20I	TGGCCA	2 cut(s)	257, 728
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	4 cut(s)	234, 554, 701, 901
NdeII	GATC	2 cut(s)	283, 877
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	2 cut(s)	309, 917
NmuCI	GTSAC	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	236, 469, 937
PpuMI	RGGWCCY	3 cut(s)	59, 308, 915
PsiI	TTATAA	1 cut(s)	804
Psp5II	RGGWCCY	3 cut(s)	59, 308, 915
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	2 cut(s)	309, 917
PspPI	GGNCC	5 cut(s)	59, 196, 308, 674, 915
PspPPI	RGGWCCY	3 cut(s)	59, 308, 915
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	3 cut(s)	89, 414, 632
RsaNI	GTAC	3 cut(s)	88, 413, 631
SaqAI	TTAA	3 cut(s)	144, 273, 964
SatI	GCNGC	3 cut(s)	235, 468, 936
Sau3AI	GATC	2 cut(s)	283, 877
Sau96I	GGNCC	5 cut(s)	59, 196, 308, 674, 915
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	3 cut(s)	97, 114, 948
SexAI	ACCWGGT	1 cut(s)	666
SfaNI	GCATC	3 cut(s)	246, 412, 518
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	5 cut(s)	59, 196, 308, 674, 915
SmlI	CTYRAG	1 cut(s)	941
SmoI	CTYRAG	1 cut(s)	941
SseBI	AGGCCT	1 cut(s)	186
SsiI	CCGC	4 cut(s)	226, 234, 445, 525
SspI	AATATT	2 cut(s)	429, 463
SspMI	CTAG	3 cut(s)	339, 419, 701
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	666
TaaI	ACNGT	3 cut(s)	92, 322, 890
TatI	WGTACW	3 cut(s)	87, 412, 630
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	3 cut(s)	144, 273, 964
Tru9I	TTAA	3 cut(s)	144, 273, 964
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	467, 935
Tsp45I	GTSAC	1 cut(s)	152
TspRI	CASTG	1 cut(s)	499
Van91I	CCANNNNNTGG	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	5 cut(s)	59, 196, 308, 674, 915
XapI	RAATTY	4 cut(s)	721, 778, 787, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XspI	CTAG	3 cut(s)	339, 419, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.