Prupe.3G139500_v2.0.a1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013534
Physical Location & Seq
Forward (+)
14725726 .. 14727238
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G139500.1

Sequence Viewer

Length: 1305 bp
ATGGCTTACTATTCATTTACTTCCATTGCCATCCATGCATTAATATCAATCCCCTTACTTCTGAACCTATCTTGTTTGTTCCACAATCTCAACCTGGCTGCTGCTGCAAAACACGGCCGCAGCAAAGTCTATGCCTCTCATCACCATCACCACCACCGTGGCAACCACAACCATCCTGATCCTGCCGCAGCATCTGATGATTCGAACCCAAAACTCCACCTAGCTTTCCTTGCCCTCCAAGCATGGAAACGCGTAATTTACTCTGATCCGTACAACTTCACGTCCACCTGGGTGGGTCCTTCAGTTTGTAACTACAAGGGTGTGTTTTGTGCACCTTCTCTTGATGACCCCAAAATCCAAGTTGTTGCTGGCATTGACCTTAATAAAGGTGACATTGCCGGATTTCTCCCTGAGGAATTAGGCCTCTTGTCTGATCTTGCACTCATCCATCTGAATAGCAACCGCTTTTGTGGCATTCTCCCTCAAAGTATGGCCAACCTTACACTCCTTTATGAGCTTGATCTCAGTAACAACAGATTTGTTGGCCCTTTCCCCACGGTCGTCCTCTCTCTTCCTACATTAAAATATCTTGATCTTCGGTACAACGAATTTGAAGGGCCATTATCTCCACAACTTTTCCAGAAAAAACTAGATGCAATATTTGTCAATAACAACCGCTTCACCAATGTACTTCCAGCTACTTTAGGTGGAAGCTCAGCCAGTGTATTGGTGGTTGCTAACAACAACTTTGGGGGGTGCCTTCCCCCAAGCATTGTCAGTTTTGCTGATACTTTAGAGGAACTGTTGTTAATCAACACAAACTTGTCAGGGTGTTTGCCACAAGAGATTGGGTTTCTGTACAAATTGAGGGTGTTGGATGTGAGCTACAACAAGCTTGTTGGTCCTATACCTTACAGCATGGCAGGGCTATCTCATTTGGAGCAACTAAATTTGGCTCACAATAGCATGACTGGGATTGTACCAGATGGAGTTTGTTGTTTGCCAAACTTGGCAAATTTCACATTCTCTTATAACTATTTCTGCGAGGAAGAGGGGATATGCCAGAATTTGACATCCAAAGGCATCGCATTTGATGATCGGCGAAACTGTTTTCCAGAGAAGCCTTACCAGAGGTCCCAGAAAGAATGTAATGCAACACTCGAGCATCCTGTTGACTGCTTTGAACATCCTTGTGACGGTGGTTTTGGTGGTGGTGCAGCTGCTTTTGCCCCTACCATTGCCGCGGTGCCTGCAGCAACGCCTCGGTCTTCGCCTTTTAGTACAGCAGCTCCCAGCTACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

435

Amino Acids

47.3

Weight (kDa)

6.07

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28380
fragaria_vesca FvH4_6g26510
malus_domestica MD17G1236200.v1.1
prunus_persica Prupe.3G139500_v2.0.a1
pyrus_communis pycom17g23940
rosa_chinensis RchiOBHm_Chr2g0127651
rosa_laevigata RLG00000018945
rosa_multiflora Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii Rroxscaffold_2G00116700
rosa_rugosa Rorug02G0272100
rosa_samantha Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana Rw2G026310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1032
AccB1I GGYRCC 2 cut(s) 756, 1246
AccII CGCG 2 cut(s) 252, 1244
AciI CCGC 6 cut(s) 118, 186, 463, 676, 1242, 1244
AclWI GGATC 2 cut(s) 173, 260
AcoI YGGCCR 2 cut(s) 115, 492
AcsI RAATTY 4 cut(s) 608, 949, 1015, 1066
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 6 cut(s) 272, 602, 690, 860, 981, 1282
AfiI CCNNNNNNNGG 1 cut(s) 1196
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 614, 1184
AjiI CACGTC 1 cut(s) 282
AjnI CCWGG 2 cut(s) 93, 287
AleI CACNNNNGTG 2 cut(s) 156, 290
AluBI AGCT 9 cut(s) 224, 517, 698, 714, 885, 895, 1220, 1289, 1296
AluI AGCT 9 cut(s) 224, 517, 698, 714, 885, 895, 1220, 1289, 1296
Alw21I GWGCWC 1 cut(s) 334
Alw44I GTGCAC 1 cut(s) 330
AlwI GGATC 2 cut(s) 173, 260
AlwNI CAGNNNCTG 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 1160
AoxI GGCC 5 cut(s) 115, 421, 492, 544, 617
ApaLI GTGCAC 1 cut(s) 330
ApeKI GCWGC 9 cut(s) 98, 101, 104, 120, 188, 1217, 1220, 1253, 1286
ApoI RAATTY 4 cut(s) 608, 949, 1015, 1066
ArsI GACNNNNNNTTYG 2 cut(s) 1187, 1219
AseI ATTAAT 1 cut(s) 41
AspS9I GGNCC 5 cut(s) 296, 545, 617, 902, 1134
AsuHPI GGTGA 4 cut(s) 134, 140, 401, 673
AsuII TTCGAA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 1160
AvaII GGWCC 3 cut(s) 296, 902, 1134
AxyI CCTNAGG 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 334
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 2 cut(s) 756, 1246
BbsI GAAGAC 1 cut(s) 1260
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 9 cut(s) 85, 88, 91, 132, 200, 1207, 1229, 1265, 1298
BccI CCATC 5 cut(s) 38, 153, 180, 456, 980
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 2 cut(s) 95, 289
BfaI CTAG 2 cut(s) 221, 650
BfmI CTRYAG 1 cut(s) 1251
BlpI GCTNAGC 1 cut(s) 715
Bme1390I CCNGG 2 cut(s) 95, 289
Bme18I GGWCC 3 cut(s) 296, 902, 1134
BmeT110I CYCGRG 1 cut(s) 1160
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 5 cut(s) 296, 545, 617, 902, 1134
BmiI GGNNCC 4 cut(s) 297, 758, 1136, 1248
BmrFI CCNGG 2 cut(s) 95, 289
BmrI ACTGGG 1 cut(s) 981
BmsI GCATC 4 cut(s) 200, 643, 1092, 1174
BmuI ACTGGG 1 cut(s) 981
BpiI GAAGAC 1 cut(s) 1260
Bpu1102I GCTNAGC 1 cut(s) 715
Bpu14I TTCGAA 1 cut(s) 203
BsaJI CCNNGG 5 cut(s) 157, 288, 555, 1242, 1262
BsaXI ACNNNNNCTCC 2 cut(s) 1273, 1303
Bsc4I CCNNNNNNNGG 1 cut(s) 1196
Bse1I ACTGG 2 cut(s) 720, 976
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 3 cut(s) 24, 393, 1236
BseBI CCWGG 2 cut(s) 95, 289
BseDI CCNNGG 5 cut(s) 157, 288, 555, 1242, 1262
BseGI GGATG 7 cut(s) 30, 172, 444, 883, 1073, 1165, 1186
BseLI CCNNNNNNNGG 1 cut(s) 1196
BseMI GCAATG 3 cut(s) 24, 393, 1236
BseMII CTCAG 3 cut(s) 402, 538, 729
BseNI ACTGG 2 cut(s) 720, 976
BseSI GKGCMC 1 cut(s) 334
BseX3I CGGCCG 1 cut(s) 115
BseXI GCAGC 9 cut(s) 85, 88, 91, 132, 200, 1207, 1229, 1265, 1298
BseYI CCCAGC 1 cut(s) 1292
BsgI GTGCAG 1 cut(s) 1236
Bsh1236I CGCG 2 cut(s) 252, 1244
Bsh1285I CGRYCG 2 cut(s) 118, 561
BshFI GGCC 5 cut(s) 117, 423, 494, 546, 619
BshNI GGYRCC 2 cut(s) 756, 1246
BsiEI CGRYCG 2 cut(s) 118, 561
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 1160
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 1120
BslI CCNNNNNNNGG 1 cut(s) 1196
BsmFI GGGAC 1 cut(s) 1120
BsmI GAATGC 1 cut(s) 474
BsnI GGCC 5 cut(s) 117, 423, 494, 546, 619
BsoBI CYCGRG 1 cut(s) 1160
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 6 cut(s) 178, 265, 433, 520, 592, 1096
Bsp1720I GCTNAGC 1 cut(s) 715
BspACI CCGC 6 cut(s) 118, 186, 463, 676, 1242, 1244
BspANI GGCC 5 cut(s) 117, 423, 494, 546, 619
BspCNI CTCAG 3 cut(s) 403, 537, 728
BspFNI CGCG 2 cut(s) 252, 1244
BspLI GGNNCC 4 cut(s) 297, 758, 1136, 1248
BspMAI CTGCAG 1 cut(s) 1255
BspPI GGATC 2 cut(s) 173, 260
BspT104I TTCGAA 1 cut(s) 203
BspT107I GGYRCC 2 cut(s) 756, 1246
BsrDI GCAATG 3 cut(s) 24, 393, 1236
BsrGI TGTACA 1 cut(s) 858
BsrI ACTGG 2 cut(s) 720, 976
BssECI CCNNGG 5 cut(s) 157, 288, 555, 1242, 1262
BssMI GATC 6 cut(s) 178, 265, 433, 520, 592, 1096
Bst2UI CCWGG 2 cut(s) 95, 289
Bst4CI ACNGT 5 cut(s) 158, 559, 804, 1109, 1199
Bst6I CTCTTC 2 cut(s) 576, 1044
BstAUI TGTACA 1 cut(s) 858
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 370, 1251
BstDEI CTNAG 3 cut(s) 411, 524, 715
BstDSI CCRYGG 3 cut(s) 157, 555, 1242
BstF5I GGATG 7 cut(s) 30, 172, 444, 883, 1073, 1165, 1186
BstFNI CGCG 2 cut(s) 252, 1244
BstKTI GATC 6 cut(s) 181, 268, 436, 523, 595, 1099
BstMBI GATC 6 cut(s) 178, 265, 433, 520, 592, 1096
BstMCI CGRYCG 2 cut(s) 118, 561
BstMWI GCNNNNNNNGC 7 cut(s) 35, 104, 230, 239, 471, 1226, 1250
BstNI CCWGG 2 cut(s) 95, 289
BstSCI CCNGG 2 cut(s) 93, 287
BstSFI CTRYAG 1 cut(s) 1251
BstSLI GKGCMC 1 cut(s) 334
BstUI CGCG 2 cut(s) 252, 1244
BstV1I GCAGC 9 cut(s) 85, 88, 91, 132, 200, 1207, 1229, 1265, 1298
BstV2I GAAGAC 1 cut(s) 1260
BstXI CCANNNNNNTGG 3 cut(s) 158, 292, 727
BstZI CGGCCG 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 5 cut(s) 117, 423, 494, 546, 619
BtgI CCRYGG 3 cut(s) 157, 555, 1242
BtgZI GCGATG 1 cut(s) 1069
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 7 cut(s) 30, 172, 444, 883, 1073, 1165, 1186
BtsIMutI CAGTG 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 370, 1251
CaiI CAGNNNCTG 1 cut(s) 194
Cfr13I GGNCC 5 cut(s) 296, 545, 617, 902, 1134
Cfr42I CCGCGG 1 cut(s) 1245
Csp6I GTAC 6 cut(s) 271, 601, 689, 859, 980, 1281
CviAII CATG 4 cut(s) 35, 243, 919, 967
CviQI GTAC 6 cut(s) 271, 601, 689, 859, 980, 1281
DdeI CTNAG 3 cut(s) 411, 524, 715
DpnI GATC 6 cut(s) 180, 267, 435, 522, 594, 1098
DpnII GATC 6 cut(s) 178, 265, 433, 520, 592, 1096
EaeI YGGCCR 2 cut(s) 115, 492
EagI CGGCCG 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 576, 1044
EarI CTCTTC 2 cut(s) 576, 1044
EclXI CGGCCG 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 423
Eco47I GGWCC 3 cut(s) 296, 902, 1134
Eco52I CGGCCG 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 1160
EcoO109I RGGNCCY 2 cut(s) 296, 1134
EcoRII CCWGG 2 cut(s) 93, 287
EcoT22I ATGCAT 1 cut(s) 40
FaeI CATG 4 cut(s) 38, 246, 922, 970
FaqI GGGAC 1 cut(s) 1120
FatI CATG 4 cut(s) 34, 242, 918, 966
FokI GGATG 7 cut(s) 17, 159, 431, 890, 1060, 1152, 1173
FspBI CTAG 2 cut(s) 221, 650
GsaI CCCAGC 1 cut(s) 1296
HaeIII GGCC 5 cut(s) 117, 423, 494, 546, 619
HapII CCGG 1 cut(s) 399
Hin1II CATG 4 cut(s) 38, 246, 922, 970
HincII GTYRAC 1 cut(s) 1174
HindII GTYRAC 1 cut(s) 1174
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 399
HphI GGTGA 4 cut(s) 134, 140, 401, 673
Hpy166II GTNNAC 3 cut(s) 285, 332, 1174
Hpy188I TCNGA 5 cut(s) 63, 196, 265, 433, 453
Hpy188III TCNNGA 5 cut(s) 176, 341, 590, 640, 1115
Hpy8I GTNNAC 3 cut(s) 285, 332, 1174
HpyAV CCTTC 4 cut(s) 309, 345, 608, 770
HpyCH4III ACNGT 5 cut(s) 158, 559, 804, 1109, 1199
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 8 cut(s) 38, 107, 332, 440, 656, 1154, 1217, 1253
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 104, 230, 239, 471, 1226, 1250
HpyF3I CTNAG 3 cut(s) 411, 524, 715
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 4 cut(s) 38, 246, 922, 970
KspI CCGCGG 1 cut(s) 1245
Kzo9I GATC 6 cut(s) 178, 265, 433, 520, 592, 1096
LmnI GCTCC 2 cut(s) 940, 1294
Lsp1109I GCAGC 9 cut(s) 85, 88, 91, 132, 200, 1207, 1229, 1265, 1298
LweI GCATC 4 cut(s) 200, 643, 1092, 1174
MaeI CTAG 2 cut(s) 221, 650
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 4 cut(s) 308, 389, 527, 1193
MalI GATC 6 cut(s) 180, 267, 435, 522, 594, 1098
MboI GATC 6 cut(s) 178, 265, 433, 520, 592, 1096
MboII GAAGA 4 cut(s) 563, 587, 1061, 1260
MhlI GDGCHC 1 cut(s) 334
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 7 cut(s) 255, 416, 608, 863, 949, 1015, 1066
MluI ACGCGT 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 855
Mox20I TGGCCA 1 cut(s) 494
Mph1103I ATGCAT 1 cut(s) 40
MscI TGGCCA 1 cut(s) 494
MseI TTAA 4 cut(s) 41, 381, 581, 809
MslI CAYNNNNRTG 3 cut(s) 156, 290, 1191
Msp20I TGGCCA 1 cut(s) 494
MspA1I CMGCKG 2 cut(s) 1220, 1244
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 95, 289
Mva1269I GAATGC 1 cut(s) 474
MvaI CCWGG 2 cut(s) 95, 289
MvnI CGCG 2 cut(s) 252, 1244
MwoI GCNNNNNNNGC 7 cut(s) 35, 104, 230, 239, 471, 1226, 1250
NdeII GATC 6 cut(s) 178, 265, 433, 520, 592, 1096
NlaIII CATG 4 cut(s) 38, 246, 922, 970
NlaIV GGNNCC 4 cut(s) 297, 758, 1136, 1248
NmuCI GTSAC 2 cut(s) 389, 1193
NsiI ATGCAT 1 cut(s) 40
NspV TTCGAA 1 cut(s) 203
OliI CACNNNNGTG 2 cut(s) 156, 290
PaeR7I CTCGAG 1 cut(s) 1160
PceI AGGCCT 1 cut(s) 423
PctI GAATGC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 200
PpuMI RGGWCCY 2 cut(s) 296, 1134
PshBI ATTAAT 1 cut(s) 41
PsiI TTATAA 1 cut(s) 1032
Psp5II RGGWCCY 2 cut(s) 296, 1134
Psp6I CCWGG 2 cut(s) 93, 287
PspFI CCCAGC 1 cut(s) 1292
PspGI CCWGG 2 cut(s) 93, 287
PspN4I GGNNCC 4 cut(s) 297, 758, 1136, 1248
PspPI GGNCC 5 cut(s) 296, 545, 617, 902, 1134
PspPPI RGGWCCY 2 cut(s) 296, 1134
PspXI VCTCGAGB 1 cut(s) 1160
PstI CTGCAG 1 cut(s) 1255
PstNI CAGNNNCTG 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 1220
RsaI GTAC 6 cut(s) 272, 602, 690, 860, 981, 1282
RsaNI GTAC 6 cut(s) 271, 601, 689, 859, 980, 1281
RseI CAYNNNNRTG 3 cut(s) 156, 290, 1191
SacII CCGCGG 1 cut(s) 1245
SaqAI TTAA 4 cut(s) 41, 381, 581, 809
Sau3AI GATC 6 cut(s) 178, 265, 433, 520, 592, 1096
Sau96I GGNCC 5 cut(s) 296, 545, 617, 902, 1134
ScrFI CCNGG 2 cut(s) 95, 289
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 4 cut(s) 200, 643, 1092, 1174
SfcI CTRYAG 1 cut(s) 1251
Sfr274I CTCGAG 1 cut(s) 1160
Sfr303I CCGCGG 1 cut(s) 1245
SfuI TTCGAA 1 cut(s) 203
SgrBI CCGCGG 1 cut(s) 1245
SinI GGWCC 3 cut(s) 296, 902, 1134
SlaI CTCGAG 1 cut(s) 1160
SmiMI CAYNNNNRTG 3 cut(s) 156, 290, 1191
SmlI CTYRAG 1 cut(s) 1160
SmoI CTYRAG 1 cut(s) 1160
Sse9I AATT 7 cut(s) 255, 416, 608, 863, 949, 1015, 1066
SseBI AGGCCT 1 cut(s) 423
SsiI CCGC 6 cut(s) 118, 186, 463, 676, 1242, 1244
SspI AATATT 1 cut(s) 660
SspMI CTAG 2 cut(s) 221, 650
StuI AGGCCT 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 93, 287
TaaI ACNGT 5 cut(s) 158, 559, 804, 1109, 1199
TaiI ACGT 1 cut(s) 284
TaqI TCGA 2 cut(s) 203, 1161
TaqII GACCGA 1 cut(s) 1254
TasI AATT 7 cut(s) 255, 416, 608, 863, 949, 1015, 1066
TatI WGTACW 3 cut(s) 688, 858, 1280
TauI GCSGC 3 cut(s) 120, 188, 1244
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 4 cut(s) 41, 381, 581, 809
Tru9I TTAA 4 cut(s) 41, 381, 581, 809
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 2 cut(s) 389, 1193
TseI GCWGC 9 cut(s) 98, 101, 104, 120, 188, 1217, 1220, 1253, 1286
Tsp45I GTSAC 2 cut(s) 389, 1193
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 1 cut(s) 727
VneI GTGCAC 1 cut(s) 330
VpaK11BI GGWCC 3 cut(s) 296, 902, 1134
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 4 cut(s) 608, 949, 1015, 1066
XcmI CCANNNNNNNNNTGG 2 cut(s) 365, 727
XhoI CTCGAG 1 cut(s) 1160
XspI CTAG 2 cut(s) 221, 650
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.