Rmu_sc0005528.1_g000004

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005528.1
OG0013534
Physical Location & Seq
Reverse (-)
32264 .. 33388
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005528.1_g000004.1.cds

Sequence Viewer

Length: 1125 bp
ctggcttctgttgctgcaaaacacagcagccgcaatagtgtacatgcttctcatcaccatggccatcaccgtggccgccaccatagtaaccattctgattctgctgcagcatcagatgatcattccaatgcaagattggaccgagcttttcttgccctccaagcatggaaacgagtgatttactccgacccaaataactttaccaccaattggaaaggtccttcagtttgcacttacaagggtgtgtactgtgcacctgctcctgatgagcccaaaacccaagttgttgctggcattgaccttaataaaggtgacatagccggattcctcccagacgaattaggcctcttgtcggaccttgcacttatccatctgaacagcaaccgcttttgcggcatcctccctcagagtttggccaacctcacactccttaatgagcttgatctcagtaacaacagatttgtgggtccttttcctactgtagtcctctctcttcctagtctaaaatatcttgatattcgctacaatgagtttgaagggacaatacctccacaactcttcagcaacatagtacaactagatgcaatatttgtaaataacaaccgctttaccagtataaatattgcagcttctaatttatcatcatcagccagtgtggtggtgtttgctaacaataaattgggcggatgcctttctccgagcatagcaaactttgcagatacattggaggagcttttgctaatcaacacaagcttgtcggggtgtcttccacaacaagttgggtttctgtacaaattgagggtgttggatgtgagcaataacaacctggttggtcctataccttacagccttgcaggtctagctcatttggagcaactaaatttggccaacaatatgatgactgggattgtgccagctggagtttgtagtttgccaaatttggcaaattttacaatctcttataattatttctgcgaggaagacgggatttgtcagaatttgacaacatccaaaggaggcaagactgcatttgatgatcgccgtaactgtgtgcctgagaggccataccagaggtcccagaaggaatgtaatgctgctcttgagcaccctgtttactgcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

374

Amino Acids

40.81

Weight (kDa)

6.4

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28380
fragaria_vesca FvH4_6g26510
malus_domestica MD17G1236200.v1.1
prunus_persica Prupe.3G139500_v2.0.a1
pyrus_communis pycom17g23940
rosa_chinensis RchiOBHm_Chr2g0127651
rosa_laevigata RLG00000018945
rosa_multiflora Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii Rroxscaffold_2G00116700
rosa_rugosa Rorug02G0272100
rosa_samantha Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana Rw2G026310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 963
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 2 cut(s) 265, 845
AccB7I CCANNNNNTGG 1 cut(s) 210
AciI CCGC 6 cut(s) 31, 76, 385, 393, 604, 684
AcoI YGGCCR 4 cut(s) 61, 73, 414, 885
AcsI RAATTY 4 cut(s) 880, 937, 946, 997
AcuI CTGAAG 2 cut(s) 207, 544
AfaI GTAC 4 cut(s) 42, 248, 573, 791
AfiI CCNNNNNNNGG 2 cut(s) 210, 352
AgsI TTSAA 1 cut(s) 536
AjnI CCWGG 1 cut(s) 825
AluBI AGCT 7 cut(s) 146, 439, 629, 733, 753, 863, 917
AluI AGCT 7 cut(s) 146, 439, 629, 733, 753, 863, 917
Alw21I GWGCWC 2 cut(s) 256, 1107
Alw44I GTGCAC 1 cut(s) 252
AoxI GGCC 6 cut(s) 61, 73, 343, 414, 885, 1061
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 6 cut(s) 14, 27, 104, 107, 626, 1094
ApoI RAATTY 4 cut(s) 880, 937, 946, 997
AspS9I GGNCC 6 cut(s) 139, 218, 355, 467, 833, 1074
AsuHPI GGTGA 3 cut(s) 47, 59, 323
AvaII GGWCC 6 cut(s) 139, 218, 355, 467, 833, 1074
BaeGI GKGCMC 1 cut(s) 256
BalI TGGCCA 3 cut(s) 63, 416, 887
BanII GRGCYC 1 cut(s) 273
BarI GAAGNNNNNNTAC 2 cut(s) 528, 560
BbsI GAAGAC 2 cut(s) 758, 987
Bbv12I GWGCWC 2 cut(s) 256, 1107
BbvI GCAGC 5 cut(s) 39, 91, 119, 638, 1081
BccI CCATC 2 cut(s) 72, 378
BceAI ACGGC 1 cut(s) 1026
BciT130I CCWGG 1 cut(s) 827
BclI TGATCA 1 cut(s) 118
BfaI CTAG 3 cut(s) 498, 578, 860
BfmI CTRYAG 2 cut(s) 105, 480
BfuAI ACCTGC 2 cut(s) 265, 845
BglI GCCNNNNNGGC 1 cut(s) 1060
BisI GCNGC 9 cut(s) 15, 28, 31, 76, 105, 108, 394, 627, 1095
BlsI GCNGC 9 cut(s) 16, 29, 32, 77, 106, 109, 395, 628, 1096
Bme1390I CCNGG 1 cut(s) 827
Bme18I GGWCC 6 cut(s) 139, 218, 355, 467, 833, 1074
BmgT120I GGNCC 6 cut(s) 139, 218, 355, 467, 833, 1074
BmiI GGNNCC 2 cut(s) 468, 1076
BmrFI CCNGG 1 cut(s) 827
BmrI ACTGGG 1 cut(s) 912
BmsI GCATC 4 cut(s) 119, 405, 571, 677
BmuI ACTGGG 1 cut(s) 912
BpiI GAAGAC 2 cut(s) 758, 987
BpmI CTGGAG 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 1121
BsaJI CCNNGG 2 cut(s) 58, 70
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 352
Bse1I ACTGG 3 cut(s) 612, 651, 907
BseBI CCWGG 1 cut(s) 827
BseDI CCNNGG 2 cut(s) 58, 70
BseGI GGATG 4 cut(s) 396, 692, 814, 1007
BseLI CCNNNNNNNGG 2 cut(s) 210, 352
BseMII CTCAG 3 cut(s) 419, 460, 1047
BseNI ACTGG 3 cut(s) 612, 651, 907
BseRI GAGGAG 1 cut(s) 743
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 5 cut(s) 39, 91, 119, 638, 1081
BshFI GGCC 6 cut(s) 63, 75, 345, 416, 887, 1063
BsiHKAI GWGCWC 2 cut(s) 256, 1107
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 2 cut(s) 553, 1060
BslI CCNNNNNNNGG 2 cut(s) 210, 352
BsmFI GGGAC 2 cut(s) 553, 1060
BsnI GGCC 6 cut(s) 63, 75, 345, 416, 887, 1063
Bsp1286I GDGCHC 3 cut(s) 256, 273, 1107
Bsp1407I TGTACA 2 cut(s) 40, 789
Bsp143I GATC 3 cut(s) 118, 442, 1036
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 6 cut(s) 31, 76, 385, 393, 604, 684
BspANI GGCC 6 cut(s) 63, 75, 345, 416, 887, 1063
BspCNI CTCAG 3 cut(s) 418, 459, 1048
BspLI GGNNCC 2 cut(s) 468, 1076
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 2 cut(s) 265, 845
BsrGI TGTACA 2 cut(s) 40, 789
BsrI ACTGG 3 cut(s) 612, 651, 907
BssECI CCNNGG 2 cut(s) 58, 70
BssMI GATC 3 cut(s) 118, 442, 1036
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 827
Bst4CI ACNGT 4 cut(s) 71, 251, 481, 1049
Bst6I CTCTTC 2 cut(s) 498, 563
BstAPI GCANNNNNTGC 1 cut(s) 713
BstAUI TGTACA 2 cut(s) 40, 789
BstC8I GCNNGC 2 cut(s) 292, 915
BstDEI CTNAG 3 cut(s) 405, 446, 1056
BstDSI CCRYGG 2 cut(s) 58, 70
BstF5I GGATG 4 cut(s) 396, 692, 814, 1007
BstKTI GATC 3 cut(s) 121, 445, 1039
BstMBI GATC 3 cut(s) 118, 442, 1036
BstMWI GCNNNNNNNGC 7 cut(s) 11, 152, 161, 393, 713, 860, 1060
BstNI CCWGG 1 cut(s) 827
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 825
BstSFI CTRYAG 2 cut(s) 105, 480
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 5 cut(s) 39, 91, 119, 638, 1081
BstV2I GAAGAC 2 cut(s) 758, 987
BstXI CCANNNNNNTGG 2 cut(s) 71, 658
BsuRI GGCC 6 cut(s) 63, 75, 345, 416, 887, 1063
BtgI CCRYGG 2 cut(s) 58, 70
BtsCI GGATG 4 cut(s) 396, 692, 814, 1007
BtsIMutI CAGTG 1 cut(s) 658
BveI ACCTGC 2 cut(s) 265, 845
Cac8I GCNNGC 2 cut(s) 292, 915
Cfr13I GGNCC 6 cut(s) 139, 218, 355, 467, 833, 1074
CsiI ACCWGGT 1 cut(s) 825
Csp6I GTAC 4 cut(s) 41, 247, 572, 790
CviAII CATG 3 cut(s) 44, 59, 165
CviQI GTAC 4 cut(s) 41, 247, 572, 790
DdeI CTNAG 3 cut(s) 405, 446, 1056
DpnI GATC 3 cut(s) 120, 444, 1038
DpnII GATC 3 cut(s) 118, 442, 1036
EaeI YGGCCR 4 cut(s) 61, 73, 414, 885
Eam1104I CTCTTC 2 cut(s) 498, 563
EarI CTCTTC 2 cut(s) 498, 563
EciI GGCGGA 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 58
Eco147I AGGCCT 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 6 cut(s) 139, 218, 355, 467, 833, 1074
Eco57I CTGAAG 2 cut(s) 207, 544
EcoO109I RGGNCCY 3 cut(s) 218, 467, 1074
EcoRII CCWGG 1 cut(s) 825
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 47, 62, 168
FaqI GGGAC 2 cut(s) 553, 1060
FatI CATG 3 cut(s) 43, 58, 164
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 9 cut(s) 15, 28, 31, 76, 105, 108, 394, 627, 1095
FokI GGATG 4 cut(s) 383, 699, 821, 994
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 9 cut(s) 15, 28, 31, 76, 105, 108, 394, 627, 1095
FspBI CTAG 3 cut(s) 498, 578, 860
GluI GCNGC 9 cut(s) 15, 28, 31, 76, 105, 108, 394, 627, 1095
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 6 cut(s) 63, 75, 345, 416, 887, 1063
HapII CCGG 1 cut(s) 321
Hin1II CATG 3 cut(s) 47, 62, 168
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 2 cut(s) 98, 324
HpaII CCGG 1 cut(s) 321
HphI GGTGA 3 cut(s) 47, 59, 323
Hpy166II GTNNAC 4 cut(s) 41, 247, 254, 1114
Hpy188I TCNGA 8 cut(s) 97, 115, 187, 355, 375, 408, 699, 996
Hpy188III TCNNGA 3 cut(s) 263, 512, 1100
Hpy8I GTNNAC 4 cut(s) 41, 247, 254, 1114
HpyAV CCTTC 3 cut(s) 231, 530, 1075
HpyCH4III ACNGT 4 cut(s) 71, 251, 481, 1049
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 152, 161, 393, 713, 860, 1060
HpyF3I CTNAG 3 cut(s) 405, 446, 1056
Hsp92II CATG 3 cut(s) 47, 62, 168
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 3 cut(s) 118, 442, 1036
LmnI GCTCC 3 cut(s) 265, 730, 871
Lsp1109I GCAGC 5 cut(s) 39, 91, 119, 638, 1081
LweI GCATC 4 cut(s) 119, 405, 571, 677
MabI ACCWGGT 1 cut(s) 825
MaeI CTAG 3 cut(s) 498, 578, 860
MaeIII GTNAC 4 cut(s) 86, 311, 449, 1043
MalI GATC 3 cut(s) 120, 444, 1038
MboI GATC 3 cut(s) 118, 442, 1036
MboII GAAGA 4 cut(s) 485, 550, 758, 992
MfeI CAATTG 1 cut(s) 208
MhlI GDGCHC 3 cut(s) 256, 273, 1107
MlsI TGGCCA 3 cut(s) 63, 416, 887
MluNI TGGCCA 3 cut(s) 63, 416, 887
MmeI TCCRAC 3 cut(s) 210, 333, 786
Mox20I TGGCCA 3 cut(s) 63, 416, 887
MscI TGGCCA 3 cut(s) 63, 416, 887
MseI TTAA 3 cut(s) 303, 432, 1123
MslI CAYNNNNRTG 3 cut(s) 57, 69, 126
Msp20I TGGCCA 3 cut(s) 63, 416, 887
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 827
MunI CAATTG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 827
MwoI GCNNNNNNNGC 7 cut(s) 11, 152, 161, 393, 713, 860, 1060
NcoI CCATGG 1 cut(s) 58
NdeII GATC 3 cut(s) 118, 442, 1036
NlaIII CATG 3 cut(s) 47, 62, 168
NlaIV GGNNCC 2 cut(s) 468, 1076
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 47
PaqCI CACCTGC 1 cut(s) 265
PceI AGGCCT 1 cut(s) 345
PfeI GAWTC 2 cut(s) 98, 324
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 9 cut(s) 16, 29, 32, 77, 106, 109, 395, 628, 1096
PpuMI RGGWCCY 3 cut(s) 218, 467, 1074
PsiI TTATAA 1 cut(s) 963
Psp5II RGGWCCY 3 cut(s) 218, 467, 1074
Psp6I CCWGG 1 cut(s) 825
PspGI CCWGG 1 cut(s) 825
PspN4I GGNNCC 2 cut(s) 468, 1076
PspPI GGNCC 6 cut(s) 139, 218, 355, 467, 833, 1074
PspPPI RGGWCCY 3 cut(s) 218, 467, 1074
PstI CTGCAG 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 4 cut(s) 42, 248, 573, 791
RsaNI GTAC 4 cut(s) 41, 247, 572, 790
RseI CAYNNNNRTG 3 cut(s) 57, 69, 126
SaqAI TTAA 3 cut(s) 303, 432, 1123
SatI GCNGC 9 cut(s) 15, 28, 31, 76, 105, 108, 394, 627, 1095
Sau3AI GATC 3 cut(s) 118, 442, 1036
Sau96I GGNCC 6 cut(s) 139, 218, 355, 467, 833, 1074
ScrFI CCNGG 1 cut(s) 827
SduI GDGCHC 3 cut(s) 256, 273, 1107
SexAI ACCWGGT 1 cut(s) 825
SfaNI GCATC 4 cut(s) 119, 405, 571, 677
SfcI CTRYAG 2 cut(s) 105, 480
SinI GGWCC 6 cut(s) 139, 218, 355, 467, 833, 1074
SmiMI CAYNNNNRTG 3 cut(s) 57, 69, 126
SmlI CTYRAG 1 cut(s) 1100
SmoI CTYRAG 1 cut(s) 1100
SseBI AGGCCT 1 cut(s) 345
SsiI CCGC 6 cut(s) 31, 76, 385, 393, 604, 684
SspI AATATT 2 cut(s) 588, 622
SspMI CTAG 3 cut(s) 498, 578, 860
StuI AGGCCT 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 825
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 4 cut(s) 71, 251, 481, 1049
TaqII GACCGA 1 cut(s) 156
TatI WGTACW 4 cut(s) 40, 246, 571, 789
TauI GCSGC 3 cut(s) 33, 78, 396
TfiI GAWTC 2 cut(s) 98, 324
Tru1I TTAA 3 cut(s) 303, 432, 1123
Tru9I TTAA 3 cut(s) 303, 432, 1123
TscAI CASTG 1 cut(s) 658
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 6 cut(s) 14, 27, 104, 107, 626, 1094
Tsp45I GTSAC 1 cut(s) 311
TspRI CASTG 1 cut(s) 658
Van91I CCANNNNNTGG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 6 cut(s) 139, 218, 355, 467, 833, 1074
XapI RAATTY 4 cut(s) 880, 937, 946, 997
XceI RCATGY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 287
XspI CTAG 3 cut(s) 498, 578, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.