MD17G1236200.v1.1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013534
Physical Location & Seq
Reverse (-)
28503167 .. 28504465
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1236200.v1.1.491

Sequence Viewer

Length: 1299 bp
ATGTCTTCCTTTTCACTTTCTTCCTTTGCCTGCCATGTATTTTCATTGCTCCTAACTTTCCTTCTAGTTCTATCTTGTCTGTTCAGCAATTTCAGTCTGGCTGCTGCTGCAAAGCGCAGCAGCAGCCACGTCTATGTCTCTCATCACCATCATAGCCACCGCGGGCACCACAACCATCCACATCCTGCAGCAACATCCGATGATTCAAACCCAAGACTCTACCAAGCTTTTCTTGCTCTCCAAGCATGGAAGCACGTAATTTACTCTGATCCATACAACATCACAAGCAATTGGGTTGGTCCTTCGGTTTGTAACTACATGGGTGTGTATTGTTCACCAGCTCTTGATGACCCCAAAATCCAAGTTGTTTCTGGCATCGACCTTAACCATAGGGACATCGCTGGATTTCTCCCTGAGGAATTTGGCCTGTTGTCGGATCTTGCACTTATCCATCTAAATAGCAACCGCTTTTGTGGCATCCTCCCTCAAAGTATGGCCAACCTTACACTCCTTTTCGAGCTTGATCTTAGTAACAACAGATTTGTAGGCCCTTTCCCCACAGTTGTCCTCTCTCTTCCTACCTTAGGCTATCTTGATCTTCGGTACAACGAGTTTGAAGGGCCATTACCTCCAGAACTTTTCAGGAAAAAACTCGATGCCATATTTGTTAATAACAACCGCTTAACCAGTGTAATTCCAGCGTCATTGGGTGGAAGCTCAGCCAGTGTAGTGGTGTTTGCTAATAACAACTTTGGCGGGTGCCTTCCCCCAAGCATAGTCAATTTCGCAGGTACTCTAGAGGAACTGCTGTTAATTAACACGAGTTTGTCAGGGTGTTTGCCCCAAGAAGTTGGGTTTCTGTACAAACTGAGGGTGTTGGATGTGAGCTACAACAAGCTTGTTGGTCCTATACCTTACAGCATGACGGGGCTATCTCATTTGGAGCAACTAAATTTGGCCCACAATATGCTGACCGGGATTGTACCCGCTGGAGTTTGTGGTCTCCCAAACTTGGCGAATTTCACATTCTCTTACAACTATTTCTGTGAGGAAGAGGGGGCCTGCCAGAATTTGACATCGAAAGGCATTGCCTTTGATGAACGCCGTAACTGTTTCCCCGAGAAACCTTACCAGAGGACCCAGAAAGAATGTAATGCCATACTCGAGCATCCTGTTGATTGCTTCGAATATCCTTGTGGCAGTGGCGGTGCATCTGCTTCCGCCCCAAGCATTGCCGCAGTGCCAGCAGCAACGCCTCTGTCTTCGCCTCCTAGTGCGGCAGCTCCTACCTATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

433

Amino Acids

46.98

Weight (kDa)

5.99

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 289 - 347 2e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28380
fragaria_vesca FvH4_6g26510
malus_domestica MD17G1236200.v1.1
prunus_persica Prupe.3G139500_v2.0.a1
pyrus_communis pycom17g23940
rosa_chinensis RchiOBHm_Chr2g0127651
rosa_laevigata RLG00000018945
rosa_multiflora Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii Rroxscaffold_2G00116700
rosa_rugosa Rorug02G0272100
rosa_samantha Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana Rw2G026310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 779
AccB1I GGYRCC 2 cut(s) 165, 759
AccII CGCG 1 cut(s) 162
AclWI GGATC 2 cut(s) 263, 444
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 4 cut(s) 419, 952, 1018, 1069
AfaI GTAC 4 cut(s) 605, 793, 863, 984
AfiI CCNNNNNNNGG 3 cut(s) 433, 584, 1012
AgsI TTSAA 2 cut(s) 207, 617
AjiI CACGTC 1 cut(s) 130
AluBI AGCT 7 cut(s) 227, 341, 520, 717, 888, 898, 1283
AluI AGCT 7 cut(s) 227, 341, 520, 717, 888, 898, 1283
Alw26I GTCTC 2 cut(s) 142, 1007
AlwI GGATC 2 cut(s) 263, 444
Ama87I CYCGRG 2 cut(s) 1118, 1163
AoxI GGCC 6 cut(s) 424, 495, 547, 620, 957, 1059
ApeKI GCWGC 9 cut(s) 101, 104, 107, 117, 120, 123, 188, 1247, 1280
ApoI RAATTY 4 cut(s) 419, 952, 1018, 1069
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
AsuC2I CCSGG 1 cut(s) 976
AsuHPI GGTGA 2 cut(s) 137, 327
AsuII TTCGAA 1 cut(s) 1185
AvaI CYCGRG 2 cut(s) 1118, 1163
AvaII GGWCC 3 cut(s) 299, 905, 1137
AxyI CCTNAGG 2 cut(s) 414, 583
BaeGI GKGCMC 1 cut(s) 168
BalI TGGCCA 1 cut(s) 497
BanI GGYRCC 2 cut(s) 165, 759
BarI GAAGNNNNNNTAC 2 cut(s) 609, 641
BauI CACGAG 1 cut(s) 820
BbsI GAAGAC 1 cut(s) 1254
BbvI GCAGC 9 cut(s) 88, 91, 94, 129, 132, 135, 200, 1259, 1292
BccI CCATC 3 cut(s) 156, 183, 459
BceAI ACGGC 1 cut(s) 1089
BcnI CCSGG 1 cut(s) 976
BcoDI GTCTC 2 cut(s) 142, 1007
BfaI CTAG 3 cut(s) 65, 797, 1272
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 779
BlpI GCTNAGC 1 cut(s) 718
Bme1390I CCNGG 1 cut(s) 976
Bme18I GGWCC 3 cut(s) 299, 905, 1137
BmeT110I CYCGRG 2 cut(s) 1118, 1163
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
BmiI GGNNCC 4 cut(s) 167, 761, 1060, 1139
BmrFI CCNGG 1 cut(s) 976
BmsI GCATC 5 cut(s) 384, 486, 646, 1177, 1220
BpiI GAAGAC 1 cut(s) 1254
BpmI CTGGAG 2 cut(s) 615, 1011
Bpu1102I GCTNAGC 1 cut(s) 718
Bpu14I TTCGAA 1 cut(s) 1185
BpuMI CCSGG 1 cut(s) 976
BsaAI YACGTR 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 1007
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 584, 1012
Bse1I ACTGG 2 cut(s) 687, 723
Bse21I CCTNAGG 2 cut(s) 414, 583
Bse3DI GCAATG 3 cut(s) 44, 1086, 1230
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 6 cut(s) 175, 181, 194, 477, 886, 1168
BseLI CCNNNNNNNGG 3 cut(s) 433, 584, 1012
BseMI GCAATG 3 cut(s) 44, 1086, 1230
BseMII CTCAG 3 cut(s) 405, 732, 860
BseNI ACTGG 2 cut(s) 687, 723
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 9 cut(s) 88, 91, 94, 129, 132, 135, 200, 1259, 1292
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 6 cut(s) 426, 497, 549, 622, 959, 1061
BshNI GGYRCC 2 cut(s) 165, 759
BsiHKCI CYCGRG 2 cut(s) 1118, 1163
BsiSI CCGG 1 cut(s) 975
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 3 cut(s) 433, 584, 1012
BsmAI GTCTC 2 cut(s) 142, 1007
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 6 cut(s) 426, 497, 549, 622, 959, 1061
Bso31I GGTCTC 1 cut(s) 1007
BsoBI CYCGRG 2 cut(s) 1118, 1163
Bsp119I TTCGAA 1 cut(s) 1185
Bsp1286I GDGCHC 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 861
Bsp143I GATC 4 cut(s) 268, 436, 523, 595
Bsp1720I GCTNAGC 1 cut(s) 718
BspANI GGCC 6 cut(s) 426, 497, 549, 622, 959, 1061
BspCNI CTCAG 3 cut(s) 406, 731, 861
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 4 cut(s) 167, 761, 1060, 1139
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 779
BspPI GGATC 2 cut(s) 263, 444
BspT104I TTCGAA 1 cut(s) 1185
BspT107I GGYRCC 2 cut(s) 165, 759
BspTNI GGTCTC 1 cut(s) 1007
BsrDI GCAATG 3 cut(s) 44, 1086, 1230
BsrGI TGTACA 1 cut(s) 861
BsrI ACTGG 2 cut(s) 687, 723
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 4 cut(s) 268, 436, 523, 595
BssSI CACGAG 1 cut(s) 820
Bst2BI CACGAG 1 cut(s) 820
Bst4CI ACNGT 2 cut(s) 562, 1112
Bst6I CTCTTC 2 cut(s) 579, 1047
BstAUI TGTACA 1 cut(s) 861
BstBAI YACGTR 1 cut(s) 256
BstBI TTCGAA 1 cut(s) 1185
BstC8I GCNNGC 4 cut(s) 31, 164, 1063, 1245
BstDEI CTNAG 5 cut(s) 414, 527, 583, 718, 869
BstDSI CCRYGG 1 cut(s) 160
BstENI CCTNNNNNAGG 1 cut(s) 582
BstF5I GGATG 6 cut(s) 175, 181, 194, 477, 886, 1168
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 4 cut(s) 271, 439, 526, 598
BstMAI GTCTC 2 cut(s) 142, 1007
BstMBI GATC 4 cut(s) 268, 436, 523, 595
BstMWI GCNNNNNNNGC 6 cut(s) 107, 123, 233, 242, 474, 1244
BstSCI CCNGG 1 cut(s) 974
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 9 cut(s) 88, 91, 94, 129, 132, 135, 200, 1259, 1292
BstV2I GAAGAC 1 cut(s) 1254
BstX2I RGATCY 1 cut(s) 436
BstXI CCANNNNNNTGG 2 cut(s) 730, 851
BstYI RGATCY 1 cut(s) 436
Bsu36I CCTNAGG 2 cut(s) 414, 583
BsuRI GGCC 6 cut(s) 426, 497, 549, 622, 959, 1061
BtgI CCRYGG 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 382
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 6 cut(s) 175, 181, 194, 477, 886, 1168
BtsI GCAGTG 2 cut(s) 1207, 1245
BtsIMutI CAGTG 4 cut(s) 694, 730, 1207, 1245
BveI ACCTGC 1 cut(s) 779
Cac8I GCNNGC 4 cut(s) 31, 164, 1063, 1245
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
Cfr42I CCGCGG 1 cut(s) 163
CseI GACGC 1 cut(s) 690
Csp6I GTAC 4 cut(s) 604, 792, 862, 983
CviAII CATG 5 cut(s) 35, 246, 319, 922, 1296
CviQI GTAC 4 cut(s) 604, 792, 862, 983
DdeI CTNAG 5 cut(s) 414, 527, 583, 718, 869
DpnI GATC 4 cut(s) 270, 438, 525, 597
DpnII GATC 4 cut(s) 268, 436, 523, 595
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 579, 1047
EarI CTCTTC 2 cut(s) 579, 1047
EciI GGCGGA 1 cut(s) 1210
Eco31I GGTCTC 1 cut(s) 1007
Eco47I GGWCC 3 cut(s) 299, 905, 1137
Eco81I CCTNAGG 2 cut(s) 414, 583
Eco88I CYCGRG 2 cut(s) 1118, 1163
EcoNI CCTNNNNNAGG 1 cut(s) 582
EcoO109I RGGNCCY 3 cut(s) 548, 1059, 1137
FaeI CATG 5 cut(s) 38, 249, 322, 925, 1299
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 407
FatI CATG 5 cut(s) 34, 245, 318, 921, 1295
FauI CCCGC 3 cut(s) 155, 749, 994
FokI GGATG 6 cut(s) 162, 168, 181, 464, 893, 1155
FspBI CTAG 3 cut(s) 65, 797, 1272
GlaI GCGC 1 cut(s) 116
GsuI CTGGAG 2 cut(s) 615, 1011
HaeIII GGCC 6 cut(s) 426, 497, 549, 622, 959, 1061
HapII CCGG 1 cut(s) 975
HgaI GACGC 1 cut(s) 690
HhaI GCGC 1 cut(s) 117
Hin1II CATG 5 cut(s) 38, 249, 322, 925, 1299
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 2 cut(s) 225, 896
HinfI GANTC 2 cut(s) 203, 216
HpaII CCGG 1 cut(s) 975
HphI GGTGA 2 cut(s) 137, 327
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 3 cut(s) 199, 268, 436
Hpy188III TCNNGA 5 cut(s) 344, 593, 632, 643, 797
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 4 cut(s) 71, 312, 611, 773
HpyCH4III ACNGT 2 cut(s) 562, 1112
HpyCH4IV ACGT 2 cut(s) 129, 255
HpyCH4V TGCA 4 cut(s) 110, 188, 443, 1211
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 123, 233, 242, 474, 1244
HpyF3I CTNAG 5 cut(s) 414, 527, 583, 718, 869
HpySE526I ACGT 2 cut(s) 129, 255
Hsp92II CATG 5 cut(s) 38, 249, 322, 925, 1299
HspAI GCGC 1 cut(s) 115
KspI CCGCGG 1 cut(s) 163
Kzo9I GATC 4 cut(s) 268, 436, 523, 595
LmnI GCTCC 3 cut(s) 54, 943, 1288
Lsp1109I GCAGC 9 cut(s) 88, 91, 94, 129, 132, 135, 200, 1259, 1292
LweI GCATC 5 cut(s) 384, 486, 646, 1177, 1220
MaeI CTAG 3 cut(s) 65, 797, 1272
MaeII ACGT 2 cut(s) 129, 255
MaeIII GTNAC 3 cut(s) 311, 530, 1106
MalI GATC 4 cut(s) 270, 438, 525, 597
MboI GATC 4 cut(s) 268, 436, 523, 595
MboII GAAGA 5 cut(s) 12, 566, 590, 1064, 1254
MfeI CAATTG 1 cut(s) 289
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 497
MluNI TGGCCA 1 cut(s) 497
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 2 cut(s) 414, 858
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 5 cut(s) 384, 669, 683, 812, 816
MslI CAYNNNNRTG 2 cut(s) 132, 323
Msp20I TGGCCA 1 cut(s) 497
MspA1I CMGCKG 2 cut(s) 162, 989
MspI CCGG 1 cut(s) 975
MspR9I CCNGG 1 cut(s) 976
MunI CAATTG 1 cut(s) 289
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 6 cut(s) 107, 123, 233, 242, 474, 1244
NciI CCSGG 1 cut(s) 976
NdeII GATC 4 cut(s) 268, 436, 523, 595
NlaIII CATG 5 cut(s) 38, 249, 322, 925, 1299
NlaIV GGNNCC 4 cut(s) 167, 761, 1060, 1139
NspV TTCGAA 1 cut(s) 1185
PacI TTAATTAA 1 cut(s) 816
PaeR7I CTCGAG 1 cut(s) 1163
PfeI GAWTC 1 cut(s) 203
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Ppu21I YACGTR 1 cut(s) 256
PpuMI RGGWCCY 1 cut(s) 1137
Psp5II RGGWCCY 1 cut(s) 1137
PspN4I GGNNCC 4 cut(s) 167, 761, 1060, 1139
PspPI GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
PspPPI RGGWCCY 1 cut(s) 1137
PspXI VCTCGAGB 1 cut(s) 1163
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 4 cut(s) 605, 793, 863, 984
RsaNI GTAC 4 cut(s) 604, 792, 862, 983
RseI CAYNNNNRTG 2 cut(s) 132, 323
SacII CCGCGG 1 cut(s) 163
SaqAI TTAA 5 cut(s) 384, 669, 683, 812, 816
Sau3AI GATC 4 cut(s) 268, 436, 523, 595
Sau96I GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 976
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 5 cut(s) 384, 486, 646, 1177, 1220
SfcI CTRYAG 1 cut(s) 186
Sfr274I CTCGAG 1 cut(s) 1163
Sfr303I CCGCGG 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 1185
SgrBI CCGCGG 1 cut(s) 163
SinI GGWCC 3 cut(s) 299, 905, 1137
SlaI CTCGAG 1 cut(s) 1163
SmiMI CAYNNNNRTG 2 cut(s) 132, 323
SmlI CTYRAG 1 cut(s) 1163
SmoI CTYRAG 1 cut(s) 1163
SspMI CTAG 3 cut(s) 65, 797, 1272
StyD4I CCNGG 1 cut(s) 974
TaaI ACNGT 2 cut(s) 562, 1112
TaiI ACGT 2 cut(s) 132, 258
TaqI TCGA 6 cut(s) 378, 516, 654, 1079, 1164, 1185
TatI WGTACW 1 cut(s) 861
TauI GCSGC 2 cut(s) 1238, 1280
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 5 cut(s) 384, 669, 683, 812, 816
Tru9I TTAA 5 cut(s) 384, 669, 683, 812, 816
TscAI CASTG 4 cut(s) 694, 730, 1207, 1245
TseI GCWGC 9 cut(s) 101, 104, 107, 117, 120, 123, 188, 1247, 1280
TspDTI ATGAA 2 cut(s) 33, 1113
TspRI CASTG 4 cut(s) 694, 730, 1207, 1245
VpaK11BI GGWCC 3 cut(s) 299, 905, 1137
XagI CCTNNNNNAGG 1 cut(s) 582
XapI RAATTY 4 cut(s) 419, 952, 1018, 1069
XbaI TCTAGA 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XhoI CTCGAG 1 cut(s) 1163
XspI CTAG 3 cut(s) 65, 797, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.