Rorug02G0272100

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013534
Physical Location & Seq
Reverse (-)
29009779 .. 29010141
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0272100.1

Sequence Viewer

Length: 363 bp
ATGGCAGCTCTGCAAGATAACCATTGGTACATGATTGGCCACTTGCTTGGTCCAAAGGCTAGGTTTCCTGGCTTCAATGGCACTAGTCCTTCAATCTGGTGCATCAAGTCTGGTCTCTCTATCCACGATGCTGGAGATCGATTCCTGTTCCAATTTGATCGTGAAGCAGATCGGAATCTAGCCCTTCACGGTGGACCTTGGTTCTATAGAAACACTATGTTGGTGGTCGGCGCTTATGATGGTGTAGGCTCAGTGGACGCTGTGTTTCTGGGGAAGATAGAGACATGGGTGGTGGTCAAAGGGTTGTCAGTGGCTCTCATGAACAAAGCAACCCTAACTCTGATTGGATCTTCAATTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

120

Amino Acids

13.08

Weight (kDa)

7.94

Isoelectric Point (pI)

25.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 5 - 76 1.4e-09 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28380
fragaria_vesca FvH4_6g26510
malus_domestica MD17G1236200.v1.1
prunus_persica Prupe.3G139500_v2.0.a1
pyrus_communis pycom17g23940
rosa_chinensis RchiOBHm_Chr2g0127651
rosa_laevigata RLG00000018945
rosa_multiflora Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii Rroxscaffold_2G00116700
rosa_rugosa Rorug02G0272100
rosa_samantha Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana Rw2G026310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 37
AfaI GTAC 1 cut(s) 29
AgsI TTSAA 3 cut(s) 76, 93, 354
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 119, 275
AlwI GGATC 1 cut(s) 355
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 50, 194
AvaII GGWCC 2 cut(s) 50, 194
BalI TGGCCA 1 cut(s) 39
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 119, 275
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 3 cut(s) 60, 84, 179
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 2 cut(s) 50, 194
BmgT120I GGNCC 2 cut(s) 50, 194
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 111, 118
BpmI CTGGAG 1 cut(s) 153
Bsa29I ATCGAT 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 1 cut(s) 69
BseCI ATCGAT 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 197
BseJI GATNNNNATC 1 cut(s) 174
BseMII CTCAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 39
BshVI ATCGAT 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 119, 275
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 136, 157, 169, 347
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 263
BspDI ATCGAT 1 cut(s) 139
BspHI TCATGA 1 cut(s) 318
BspPI GGATC 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 4 cut(s) 136, 157, 169, 347
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 250
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 4 cut(s) 139, 160, 172, 350
BstMAI GTCTC 2 cut(s) 119, 275
BstMBI GATC 4 cut(s) 136, 157, 169, 347
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 347
BstXI CCANNNNNNTGG 2 cut(s) 47, 131
BstYI RGATCY 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 139
BsuRI GGCC 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 258, 315
CciI TCATGA 1 cut(s) 318
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 50, 194
ClaI ATCGAT 1 cut(s) 139
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 28
CviAII CATG 3 cut(s) 31, 285, 319
CviJI RGCY 7 cut(s) 8, 39, 59, 72, 182, 249, 314
CviKI_1 RGCY 7 cut(s) 8, 39, 59, 72, 182, 249, 314
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 250
DpnI GATC 4 cut(s) 138, 159, 171, 349
DpnII GATC 4 cut(s) 136, 157, 169, 347
EaeI YGGCCR 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 2 cut(s) 50, 194
EcoRII CCWGG 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 3 cut(s) 34, 288, 322
FaiI YATR 6 cut(s) 32, 207, 218, 237, 286, 320
FatI CATG 3 cut(s) 30, 284, 318
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 60, 84, 179
GlaI GCGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 1 cut(s) 39
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 233
Hin1II CATG 3 cut(s) 34, 288, 322
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 2 cut(s) 141, 175
Hpy166II GTNNAC 2 cut(s) 194, 256
Hpy188I TCNGA 2 cut(s) 174, 342
Hpy188III TCNNGA 2 cut(s) 161, 319
Hpy8I GTNNAC 2 cut(s) 194, 256
HpyAV CCTTC 2 cut(s) 99, 194
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 13, 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 3 cut(s) 34, 288, 322
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 4 cut(s) 136, 157, 169, 347
LpnPI CCDG 7 cut(s) 54, 81, 82, 96, 117, 158, 254
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 111, 118
MaeI CTAG 3 cut(s) 60, 84, 179
MalI GATC 4 cut(s) 138, 159, 171, 349
MboI GATC 4 cut(s) 136, 157, 169, 347
MboII GAAGA 2 cut(s) 286, 342
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 2 cut(s) 152, 354
MluNI TGGCCA 1 cut(s) 39
Mox20I TGGCCA 1 cut(s) 39
MscI TGGCCA 1 cut(s) 39
Msp20I TGGCCA 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 69
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 4 cut(s) 136, 157, 169, 347
NlaIII CATG 3 cut(s) 34, 288, 322
PagI TCATGA 1 cut(s) 318
PfeI GAWTC 2 cut(s) 141, 175
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspPI GGNCC 2 cut(s) 50, 194
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 136, 157, 169, 347
Sau96I GGNCC 2 cut(s) 50, 194
ScrFI CCNGG 1 cut(s) 69
SetI ASST 3 cut(s) 10, 65, 199
SfaNI GCATC 2 cut(s) 111, 118
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 2 cut(s) 50, 194
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 2 cut(s) 152, 354
SspMI CTAG 3 cut(s) 60, 84, 179
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 152, 354
TfiI GAWTC 2 cut(s) 141, 175
TscAI CASTG 2 cut(s) 258, 315
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 2 cut(s) 258, 315
VpaK11BI GGWCC 2 cut(s) 50, 194
XspI CTAG 3 cut(s) 60, 84, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.