FvH4_6g26510

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013534
Physical Location & Seq
Forward (+)
20261499 .. 20262728
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26510.t1

Sequence Viewer

Length: 1230 bp
ATGGCTTTGTTTTCATTCACTTCCATTGCTAAATGTGCCAATGCCATCTCATTTACTCTCTTAGTTGTGCAAGTCTCCAGTTCGTTCAACCATCTCAATCTAACTTCTGTTGCTGCAAAACACAGCAGTAGAGATAGTGTACATGCTTCTCATCATCATGGCCATCCTCACCATGACCGCCACCACAGTAACCACTCTGATTCTGCTGCAGCTTCAGATGATCATTCAAATGCAAGACTGGACCGAGCTTTTCTTTCGCTCCAATCATGGAAACGAGTCATGTACTCTGATCCACACAACTTTACCTCGAACTGGGAGGGTCGTTCAGTTTGCACTTACAGGGGTGTGTTCTGTGCACCTGCTCCTGATGACCCCAAAATCCAAGTTGTTGCTGGCATTGACCTCAATAAAGCTGACATAGCCGGATTCCTCCCAGCCGAATTAGGCCTGCTGTCGGACCTTGCGCTTATCCATCTGAATAGCAACCGCTTTTGTGGCATCCTCCCTCACAGTTTGGCCAACCTCACACTCCTTCATGAGCTTGATCTCAGTAACAACAGATTTGTAGGTCCTTTTCCTACTGTAGTCCTCTCTCTCCCTAGTCTAAAATACCTTGATCTTCGTTACAATGAGTTTGAAGGGGTGTTACCTCCACAACTCTTCAGCAACATAGTACAACTAGATGCAATATTTGTAAATAACAACCGCTTCACCAGTATAAACATTCCAGCTTCGAGTTTATCATCATCAGCCAGTGTGGTGGTTTTTGCTAACAATAACTTCAGCGGATGCCTTCCTCCGAGCATAGCCAACTTTGCAAATACATTAGAGGAGCTTTTGCTAATCAACACTAGCTTGTCGGGGTGTCTTCCACAACAAGTTGGGTTTCTGTACAAATTGAGGGTTTTGGATGTGAGCAATAACAAGCTGGTTGGTCCTATACCTTACAGCCTTGCAGGGCTAGCTCACTTGGAGCAACTAAATTTGGCCCACAATATGATGACTGGAATTGTGCCAGCTGGAGTTTGTAGTCTGCCTAATTTGGCAAATTTTACAATCTCTTATAATTATTTCTGTGAGGAAGACGGGAGCATTTGTAAGAATTTGACAACATCCAAAAGAGGCAACACTGCATTTGATGATCGCCGTAACTGTCTGCCTGACAGGCCTTACCAGAGGACCCAGAAGGAATGTAATGCTATCCTTGAGAACCCTGTGGACTGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

410

Amino Acids

44.9

Weight (kDa)

6.42

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 178 - 237 3e-08 Leucine rich repeat
LRR_8 PF13855 275 - 333 4.5e-07 Leucine rich repeat
LRR_8 PF13855 299 - 357 3.5e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28380
fragaria_vesca FvH4_6g26510
malus_domestica MD17G1236200.v1.1
prunus_persica Prupe.3G139500_v2.0.a1
pyrus_communis pycom17g23940
rosa_chinensis RchiOBHm_Chr2g0127651
rosa_laevigata RLG00000018945
rosa_multiflora Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii Rroxscaffold_2G00116700
rosa_rugosa Rorug02G0272100
rosa_samantha Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana Rw2G026310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1065
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 1 cut(s) 367
AciI CCGC 4 cut(s) 178, 487, 706, 786
AclWI GGATC 1 cut(s) 284
AcoI YGGCCR 2 cut(s) 160, 516
AcsI RAATTY 3 cut(s) 982, 1048, 1102
AcuI CTGAAG 3 cut(s) 198, 646, 766
AfaI GTAC 4 cut(s) 141, 284, 675, 893
AfiI CCNNNNNNNGG 2 cut(s) 312, 454
AgsI TTSAA 3 cut(s) 88, 228, 638
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 354
AlwI GGATC 1 cut(s) 284
AoxI GGCC 5 cut(s) 160, 445, 516, 987, 1166
ApaLI GTGCAC 1 cut(s) 354
ApeKI GCWGC 3 cut(s) 113, 206, 209
ApoI RAATTY 3 cut(s) 982, 1048, 1102
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 6 cut(s) 241, 457, 569, 935, 988, 1179
AsuHPI GGTGA 2 cut(s) 161, 703
AsuNHI GCTAGC 1 cut(s) 961
AvaII GGWCC 5 cut(s) 241, 457, 569, 935, 1179
BaeGI GKGCMC 1 cut(s) 358
BalI TGGCCA 2 cut(s) 162, 518
BarI GAAGNNNNNNTAC 2 cut(s) 630, 662
BbsI GAAGAC 2 cut(s) 860, 1089
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 3 cut(s) 100, 193, 221
BccI CCATC 4 cut(s) 53, 99, 171, 480
BceAI ACGGC 1 cut(s) 1131
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 4 cut(s) 600, 680, 852, 962
BfmI CTRYAG 2 cut(s) 207, 582
BfuAI ACCTGC 1 cut(s) 367
BglI GCCNNNNNGGC 1 cut(s) 1165
BisI GCNGC 3 cut(s) 114, 207, 210
BlsI GCNGC 3 cut(s) 115, 208, 211
Bme18I GGWCC 5 cut(s) 241, 457, 569, 935, 1179
BmgT120I GGNCC 6 cut(s) 241, 457, 569, 935, 988, 1179
BmiI GGNNCC 1 cut(s) 1181
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 507, 673, 779
BmtI GCTAGC 1 cut(s) 965
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 2 cut(s) 860, 1089
BpmI CTGGAG 2 cut(s) 61, 1041
BpuEI CTTGAG 1 cut(s) 1226
BsaXI ACNNNNNCTCC 2 cut(s) 1081, 1111
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 454
Bse1I ACTGG 6 cut(s) 78, 243, 317, 714, 753, 1009
Bse3DI GCAATG 1 cut(s) 24
BseGI GGATG 5 cut(s) 163, 498, 794, 916, 1112
BseLI CCNNNNNNNGG 2 cut(s) 312, 454
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 562
BseNI ACTGG 6 cut(s) 78, 243, 317, 714, 753, 1009
BseRI GAGGAG 1 cut(s) 845
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 3 cut(s) 100, 193, 221
BseYI CCCAGC 1 cut(s) 433
BshFI GGCC 5 cut(s) 162, 447, 518, 989, 1168
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 312, 454
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 5 cut(s) 162, 447, 518, 989, 1168
Bsp1286I GDGCHC 1 cut(s) 358
Bsp1407I TGTACA 2 cut(s) 139, 891
Bsp143I GATC 5 cut(s) 220, 289, 544, 616, 1141
BspACI CCGC 4 cut(s) 178, 487, 706, 786
BspANI GGCC 5 cut(s) 162, 447, 518, 989, 1168
BspCNI CTCAG 1 cut(s) 561
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 1181
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 367
BspOI GCTAGC 1 cut(s) 965
BspPI GGATC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 24
BsrGI TGTACA 2 cut(s) 139, 891
BsrI ACTGG 6 cut(s) 78, 243, 317, 714, 753, 1009
BssMI GATC 5 cut(s) 220, 289, 544, 616, 1141
Bst4CI ACNGT 4 cut(s) 188, 512, 583, 1154
Bst6I CTCTTC 1 cut(s) 665
BstAUI TGTACA 2 cut(s) 139, 891
BstC8I GCNNGC 4 cut(s) 394, 449, 963, 1017
BstDEI CTNAG 2 cut(s) 61, 548
BstF5I GGATG 5 cut(s) 163, 498, 794, 916, 1112
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 5 cut(s) 223, 292, 547, 619, 1144
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 5 cut(s) 220, 289, 544, 616, 1141
BstMWI GCNNNNNNNGC 6 cut(s) 35, 419, 495, 815, 962, 1165
BstNSI RCATGY 1 cut(s) 146
BstSFI CTRYAG 2 cut(s) 207, 582
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 3 cut(s) 100, 193, 221
BstV2I GAAGAC 2 cut(s) 860, 1089
BstXI CCANNNNNNTGG 1 cut(s) 760
BsuRI GGCC 5 cut(s) 162, 447, 518, 989, 1168
BtsCI GGATG 5 cut(s) 163, 498, 794, 916, 1112
BtsI GCAGTG 1 cut(s) 1128
BtsIMutI CAGTG 2 cut(s) 760, 1128
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 4 cut(s) 394, 449, 963, 1017
CciI TCATGA 1 cut(s) 535
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 6 cut(s) 241, 457, 569, 935, 988, 1179
Csp6I GTAC 4 cut(s) 140, 283, 674, 892
CviAII CATG 6 cut(s) 143, 158, 173, 267, 280, 536
CviQI GTAC 4 cut(s) 140, 283, 674, 892
DdeI CTNAG 2 cut(s) 61, 548
DpnI GATC 5 cut(s) 222, 291, 546, 618, 1143
DpnII GATC 5 cut(s) 220, 289, 544, 616, 1141
EaeI YGGCCR 2 cut(s) 160, 516
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
Eco147I AGGCCT 2 cut(s) 447, 1168
Eco47I GGWCC 5 cut(s) 241, 457, 569, 935, 1179
Eco57I CTGAAG 3 cut(s) 198, 646, 766
EcoO109I RGGNCCY 2 cut(s) 569, 1179
FaeI CATG 6 cut(s) 146, 161, 176, 270, 283, 539
FatI CATG 6 cut(s) 142, 157, 172, 266, 279, 535
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 114, 207, 210
FokI GGATG 5 cut(s) 150, 485, 801, 923, 1099
Fsp4HI GCNGC 3 cut(s) 114, 207, 210
FspBI CTAG 4 cut(s) 600, 680, 852, 962
GlaI GCGC 1 cut(s) 465
GluI GCNGC 3 cut(s) 114, 207, 210
GsaI CCCAGC 1 cut(s) 437
GsuI CTGGAG 2 cut(s) 61, 1041
HaeIII GGCC 5 cut(s) 162, 447, 518, 989, 1168
HapII CCGG 1 cut(s) 423
HhaI GCGC 1 cut(s) 466
Hin1II CATG 6 cut(s) 146, 161, 176, 270, 283, 539
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 3 cut(s) 200, 276, 426
HpaII CCGG 1 cut(s) 423
HphI GGTGA 2 cut(s) 161, 703
Hpy166II GTNNAC 3 cut(s) 140, 356, 1219
Hpy188I TCNGA 6 cut(s) 199, 217, 289, 457, 477, 801
Hpy188III TCNNGA 2 cut(s) 365, 536
Hpy8I GTNNAC 3 cut(s) 140, 356, 1219
HpyAV CCTTC 4 cut(s) 542, 632, 803, 1180
HpyCH4III ACNGT 4 cut(s) 188, 512, 583, 1154
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 419, 495, 815, 962, 1165
HpyF3I CTNAG 2 cut(s) 61, 548
Hsp92II CATG 6 cut(s) 146, 161, 176, 270, 283, 539
HspAI GCGC 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 5 cut(s) 220, 289, 544, 616, 1141
LmnI GCTCC 5 cut(s) 264, 367, 832, 973, 1089
Lsp1109I GCAGC 3 cut(s) 100, 193, 221
LweI GCATC 3 cut(s) 507, 673, 779
MaeI CTAG 4 cut(s) 600, 680, 852, 962
MaeIII GTNAC 5 cut(s) 188, 551, 623, 645, 1148
MalI GATC 5 cut(s) 222, 291, 546, 618, 1143
MboI GATC 5 cut(s) 220, 289, 544, 616, 1141
MboII GAAGA 4 cut(s) 611, 652, 860, 1094
MhlI GDGCHC 1 cut(s) 358
MlsI TGGCCA 2 cut(s) 162, 518
MluCI AATT 8 cut(s) 440, 896, 982, 1008, 1039, 1048, 1066, 1102
MluNI TGGCCA 2 cut(s) 162, 518
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 435
Mox20I TGGCCA 2 cut(s) 162, 518
MscI TGGCCA 2 cut(s) 162, 518
MseI TTAA 1 cut(s) 1228
MslI CAYNNNNRTG 2 cut(s) 156, 228
Msp20I TGGCCA 2 cut(s) 162, 518
MspA1I CMGCKG 2 cut(s) 786, 1019
MspI CCGG 1 cut(s) 423
MwoI GCNNNNNNNGC 6 cut(s) 35, 419, 495, 815, 962, 1165
NdeII GATC 5 cut(s) 220, 289, 544, 616, 1141
NheI GCTAGC 1 cut(s) 961
NlaIII CATG 6 cut(s) 146, 161, 176, 270, 283, 539
NlaIV GGNNCC 1 cut(s) 1181
NspI RCATGY 1 cut(s) 146
PagI TCATGA 1 cut(s) 535
PaqCI CACCTGC 1 cut(s) 367
PceI AGGCCT 2 cut(s) 447, 1168
PfeI GAWTC 2 cut(s) 200, 426
PkrI GCNGC 3 cut(s) 115, 208, 211
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PpuMI RGGWCCY 2 cut(s) 569, 1179
PsiI TTATAA 1 cut(s) 1065
Psp5II RGGWCCY 2 cut(s) 569, 1179
PspFI CCCAGC 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 1181
PspPI GGNCC 6 cut(s) 241, 457, 569, 935, 988, 1179
PspPPI RGGWCCY 2 cut(s) 569, 1179
PstI CTGCAG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 4 cut(s) 141, 284, 675, 893
RsaNI GTAC 4 cut(s) 140, 283, 674, 892
RseI CAYNNNNRTG 2 cut(s) 156, 228
SaqAI TTAA 1 cut(s) 1228
SatI GCNGC 3 cut(s) 114, 207, 210
Sau3AI GATC 5 cut(s) 220, 289, 544, 616, 1141
Sau96I GGNCC 6 cut(s) 241, 457, 569, 935, 988, 1179
SchI GAGTC 1 cut(s) 285
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 3 cut(s) 507, 673, 779
SfcI CTRYAG 2 cut(s) 207, 582
SinI GGWCC 5 cut(s) 241, 457, 569, 935, 1179
SmiMI CAYNNNNRTG 2 cut(s) 156, 228
SmlI CTYRAG 1 cut(s) 1205
SmoI CTYRAG 1 cut(s) 1205
Sse9I AATT 8 cut(s) 440, 896, 982, 1008, 1039, 1048, 1066, 1102
SseBI AGGCCT 2 cut(s) 447, 1168
SsiI CCGC 4 cut(s) 178, 487, 706, 786
SspI AATATT 1 cut(s) 690
SspMI CTAG 4 cut(s) 600, 680, 852, 962
StuI AGGCCT 2 cut(s) 447, 1168
TaaI ACNGT 4 cut(s) 188, 512, 583, 1154
TaqI TCGA 2 cut(s) 308, 734
TaqII GACCGA 1 cut(s) 258
TasI AATT 8 cut(s) 440, 896, 982, 1008, 1039, 1048, 1066, 1102
TatI WGTACW 4 cut(s) 139, 282, 673, 891
TfiI GAWTC 2 cut(s) 200, 426
Tru1I TTAA 1 cut(s) 1228
Tru9I TTAA 1 cut(s) 1228
TscAI CASTG 2 cut(s) 760, 1135
TseI GCWGC 3 cut(s) 113, 206, 209
TspDTI ATGAA 1 cut(s) 524
TspRI CASTG 2 cut(s) 760, 1135
VneI GTGCAC 1 cut(s) 354
VpaK11BI GGWCC 5 cut(s) 241, 457, 569, 935, 1179
XapI RAATTY 3 cut(s) 982, 1048, 1102
XceI RCATGY 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XspI CTAG 4 cut(s) 600, 680, 852, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.