Rroxscaffold_2G00116700

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013534
Physical Location & Seq
Forward (+)
43972224 .. 43975874
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00116700.1

Sequence Viewer

Length: 1308 bp
ATGGCGCCTTTGTTTTCATTCACTTCCATTGCTAAATGTGCCAATGCCATCTCATTTATTCTCTTTGTTGTGTATGTCTCCAGTTTGTTCAACCATCTCAATCTGGCTTCTGTTGCTGCAAAACACAGCAGCCGCAATAGTGTACATGCTTCTCATCACCATGGCCATCACCGTGGCCGCCACCATAGTAACCATTCTGATTCTGCTGCAGCATCAGATGATCATTCCAATGCAAGATTGGACCGAGCTTTTCTTGCCCTCCAAGCATGGAAACGAGTGATTTACTCCGACCCAAATAACTTTACCACCAATTGGAAAGGTCCTTCAGTTTGCACTTACAAGGGTGTGTACTGTGCACCTGCTCCTGATGAGCCCAAAACCCAAGTTGTTGCTGGCATTGACCTTAATAAAGGTGACATAGCCGGATTCCTCCCAGACGAATTAGGCCTCTTGTCGGACCTTGCACTTATCCATCTGAACAGCAACCGCTTTTGCGGCATCCTCCCTCAGAGTTTGGCCAACCTCACACTCCTTAATGAGCTTGATCTCAGTAACAACAGATTTGTGGGTCCTTTTCCTACTGTAGTCCTCTCTCTTCCTAGTCTAAAATATCTTGATATTCGCTACAATGAGTTTGAAGGGACAATACCTCCACAACTCTTCAGCAACATAGTACAACTAGATGCAATATTTGTAAATAACAACCGCTTTACTAGTATAAATATTGCAGCTTCTAATTTATCATCATCAGCCAGTGTGGTGGTGTTTGCTAACAATAAATTGGGCGGATGCCTTTCTCCGAGCATAGCTAACTTTGCAGATACATTGGAGGAGCTTTTGCTAATCAACACAAGCTTGTCGGGGTGTCTTCCACAACAAGTTGGGTTTCTGTACAAATTGAGGGTGTTGGATGTGAGCAATAACAACCTGGTTGGTCCTATACCTTATAGCCTTGCAGGGCTAGCTCATTTGGAGCAACTAAATTTGGCAAACAATATGATGACTGGGATTGTGCCAGCTGGAGTTTGTAGTTTGCCAAATTTGGCAAATTTTACAATCTCTTACAATTATTTCTGCGAGGAAGACGGGATTTGTCAGAATTTGACAACATCCAAAGGAGGCAAGACTCTATTTGATGATCGCCGTAACTGTTTGCCTGAGAGGCCATACCAGAGGACCCAGAAGGAATGTAAAGCTGCTCTTGAGCACCCTTGGCCGGAAATGGTCGCTGGAGTTAGTGGCGAGCCGCAGCCGACCACCACCAATGGTGTCGGGGCCGAGCTGCTCGCTTCGTCTCATCAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

435

Amino Acids

47.23

Weight (kDa)

6.33

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 275 - 333 1.6e-06 Leucine rich repeat
LRR_8 PF13855 299 - 357 2.2e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28380
fragaria_vesca FvH4_6g26510
malus_domestica MD17G1236200.v1.1
prunus_persica Prupe.3G139500_v2.0.a1
pyrus_communis pycom17g23940
rosa_chinensis RchiOBHm_Chr2g0127651
rosa_laevigata RLG00000018945
rosa_multiflora Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii Rroxscaffold_2G00116700
rosa_rugosa Rorug02G0272100
rosa_samantha Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana Rw2G026310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 312
AciI CCGC 7 cut(s) 133, 178, 487, 495, 706, 786, 1247
AcoI YGGCCR 4 cut(s) 163, 175, 516, 1214
AcsI RAATTY 4 cut(s) 982, 1039, 1048, 1099
AcuI CTGAAG 2 cut(s) 309, 646
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 144, 350, 675, 893
AfiI CCNNNNNNNGG 3 cut(s) 312, 454, 1216
AgsI TTSAA 2 cut(s) 91, 638
AhlI ACTAGT 1 cut(s) 713
AjnI CCWGG 1 cut(s) 927
Alw21I GWGCWC 2 cut(s) 358, 1209
Alw26I GTCTC 2 cut(s) 82, 1299
Alw44I GTGCAC 1 cut(s) 354
AoxI GGCC 7 cut(s) 163, 175, 445, 516, 1163, 1214, 1275
ApaLI GTGCAC 1 cut(s) 354
ApeKI GCWGC 8 cut(s) 116, 129, 206, 209, 728, 1196, 1249, 1282
ApoI RAATTY 4 cut(s) 982, 1039, 1048, 1099
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 7 cut(s) 241, 320, 457, 569, 935, 1176, 1275
AsuHPI GGTGA 3 cut(s) 149, 161, 425
AsuNHI GCTAGC 1 cut(s) 961
AvaII GGWCC 6 cut(s) 241, 320, 457, 569, 935, 1176
BaeGI GKGCMC 1 cut(s) 358
BalI TGGCCA 2 cut(s) 165, 518
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 375
BarI GAAGNNNNNNTAC 2 cut(s) 630, 662
BbsI GAAGAC 2 cut(s) 860, 1089
Bbv12I GWGCWC 2 cut(s) 358, 1209
BbvI GCAGC 8 cut(s) 103, 141, 193, 221, 740, 1183, 1261, 1269
BccI CCATC 4 cut(s) 56, 102, 174, 480
BceAI ACGGC 1 cut(s) 1128
BciT130I CCWGG 1 cut(s) 929
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 82, 1299
BcuI ACTAGT 1 cut(s) 713
BfaI CTAG 4 cut(s) 600, 680, 714, 962
BfmI CTRYAG 2 cut(s) 207, 582
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 367
BglI GCCNNNNNGGC 1 cut(s) 1162
Bme1390I CCNGG 1 cut(s) 929
Bme18I GGWCC 6 cut(s) 241, 320, 457, 569, 935, 1176
BmgT120I GGNCC 7 cut(s) 241, 320, 457, 569, 935, 1176, 1275
BmiI GGNNCC 4 cut(s) 6, 570, 1178, 1276
BmrFI CCNGG 1 cut(s) 929
BmrI ACTGGG 1 cut(s) 1014
BmsI GCATC 4 cut(s) 221, 507, 673, 779
BmtI GCTAGC 1 cut(s) 965
BmuI ACTGGG 1 cut(s) 1014
BpiI GAAGAC 2 cut(s) 860, 1089
BpmI CTGGAG 3 cut(s) 64, 1041, 1251
BpuEI CTTGAG 1 cut(s) 1223
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 160, 172, 1211
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 454, 1216
Bse1I ACTGG 3 cut(s) 81, 753, 1009
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 929
BseDI CCNNGG 3 cut(s) 160, 172, 1211
BseGI GGATG 4 cut(s) 498, 794, 916, 1109
BseLI CCNNNNNNNGG 3 cut(s) 312, 454, 1216
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 3 cut(s) 521, 562, 1149
BseNI ACTGG 3 cut(s) 81, 753, 1009
BseRI GAGGAG 1 cut(s) 845
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 8 cut(s) 103, 141, 193, 221, 740, 1183, 1261, 1269
BshFI GGCC 7 cut(s) 165, 177, 447, 518, 1165, 1216, 1277
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 358, 1209
BsiSI CCGG 2 cut(s) 423, 1217
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 3 cut(s) 312, 454, 1216
BsmAI GTCTC 2 cut(s) 82, 1299
BsmBI CGTCTC 1 cut(s) 1299
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 7 cut(s) 165, 177, 447, 518, 1165, 1216, 1277
Bsp1286I GDGCHC 3 cut(s) 358, 375, 1209
Bsp1407I TGTACA 2 cut(s) 142, 891
Bsp143I GATC 3 cut(s) 220, 544, 1138
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 7 cut(s) 133, 178, 487, 495, 706, 786, 1247
BspANI GGCC 7 cut(s) 165, 177, 447, 518, 1165, 1216, 1277
BspCNI CTCAG 3 cut(s) 520, 561, 1150
BspLI GGNNCC 4 cut(s) 6, 570, 1178, 1276
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 367
BspOI GCTAGC 1 cut(s) 965
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 27
BsrGI TGTACA 2 cut(s) 142, 891
BsrI ACTGG 3 cut(s) 81, 753, 1009
BssECI CCNNGG 3 cut(s) 160, 172, 1211
BssMI GATC 3 cut(s) 220, 544, 1138
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 160, 1211
Bst2UI CCWGG 1 cut(s) 929
Bst4CI ACNGT 4 cut(s) 173, 353, 583, 1151
Bst6I CTCTTC 2 cut(s) 600, 665
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 2 cut(s) 142, 891
BstC8I GCNNGC 5 cut(s) 394, 963, 1017, 1244, 1287
BstDEI CTNAG 3 cut(s) 507, 548, 1158
BstDSI CCRYGG 2 cut(s) 160, 172
BstF5I GGATG 4 cut(s) 498, 794, 916, 1109
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 223, 547, 1141
BstMAI GTCTC 2 cut(s) 82, 1299
BstMBI GATC 3 cut(s) 220, 544, 1138
BstMWI GCNNNNNNNGC 9 cut(s) 38, 113, 254, 263, 495, 815, 962, 1162, 1213
BstNI CCWGG 1 cut(s) 929
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 927
BstSFI CTRYAG 2 cut(s) 207, 582
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 8 cut(s) 103, 141, 193, 221, 740, 1183, 1261, 1269
BstV2I GAAGAC 2 cut(s) 860, 1089
BstXI CCANNNNNNTGG 2 cut(s) 173, 760
BsuRI GGCC 7 cut(s) 165, 177, 447, 518, 1165, 1216, 1277
BtgI CCRYGG 2 cut(s) 160, 172
BtsCI GGATG 4 cut(s) 498, 794, 916, 1109
BtsIMutI CAGTG 1 cut(s) 760
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 5 cut(s) 394, 963, 1017, 1244, 1287
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 7 cut(s) 241, 320, 457, 569, 935, 1176, 1275
CsiI ACCWGGT 1 cut(s) 927
Csp6I GTAC 4 cut(s) 143, 349, 674, 892
CviAII CATG 3 cut(s) 146, 161, 267
CviQI GTAC 4 cut(s) 143, 349, 674, 892
DdeI CTNAG 3 cut(s) 507, 548, 1158
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 222, 546, 1140
DpnII GATC 3 cut(s) 220, 544, 1138
EaeI YGGCCR 4 cut(s) 163, 175, 516, 1214
Eam1104I CTCTTC 2 cut(s) 600, 665
EarI CTCTTC 2 cut(s) 600, 665
EciI GGCGGA 1 cut(s) 801
Eco130I CCWWGG 2 cut(s) 160, 1211
Eco147I AGGCCT 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 6 cut(s) 241, 320, 457, 569, 935, 1176
Eco57I CTGAAG 2 cut(s) 309, 646
EcoO109I RGGNCCY 3 cut(s) 320, 569, 1176
EcoRII CCWGG 1 cut(s) 927
EcoT14I CCWWGG 2 cut(s) 160, 1211
EcoT38I GRGCYC 1 cut(s) 375
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 160, 1211
Esp3I CGTCTC 1 cut(s) 1299
FaeI CATG 3 cut(s) 149, 164, 270
FalI AAGNNNNNCTT 2 cut(s) 1185, 1217
FaqI GGGAC 1 cut(s) 655
FatI CATG 3 cut(s) 145, 160, 266
FbaI TGATCA 1 cut(s) 220
FokI GGATG 4 cut(s) 485, 801, 923, 1096
FriOI GRGCYC 1 cut(s) 375
FspBI CTAG 4 cut(s) 600, 680, 714, 962
GlaI GCGC 1 cut(s) 6
GsuI CTGGAG 3 cut(s) 64, 1041, 1251
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 7 cut(s) 165, 177, 447, 518, 1165, 1216, 1277
HapII CCGG 2 cut(s) 423, 1217
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 149, 164, 270
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 853
HinfI GANTC 3 cut(s) 200, 426, 1126
HpaII CCGG 2 cut(s) 423, 1217
HphI GGTGA 3 cut(s) 149, 161, 425
Hpy166II GTNNAC 3 cut(s) 143, 349, 356
Hpy188I TCNGA 8 cut(s) 199, 217, 289, 457, 477, 510, 801, 1098
Hpy188III TCNNGA 3 cut(s) 365, 614, 1202
Hpy8I GTNNAC 3 cut(s) 143, 349, 356
HpyAV CCTTC 3 cut(s) 333, 632, 1177
HpyCH4III ACNGT 4 cut(s) 173, 353, 583, 1151
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 113, 254, 263, 495, 815, 962, 1162, 1213
HpyF3I CTNAG 3 cut(s) 507, 548, 1158
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 149, 164, 270
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 220, 544, 1138
LmnI GCTCC 3 cut(s) 367, 832, 973
Lsp1109I GCAGC 8 cut(s) 103, 141, 193, 221, 740, 1183, 1261, 1269
LweI GCATC 4 cut(s) 221, 507, 673, 779
MabI ACCWGGT 1 cut(s) 927
MaeI CTAG 4 cut(s) 600, 680, 714, 962
MaeIII GTNAC 4 cut(s) 188, 413, 551, 1145
MalI GATC 3 cut(s) 222, 546, 1140
MboI GATC 3 cut(s) 220, 544, 1138
MboII GAAGA 4 cut(s) 587, 652, 860, 1094
MfeI CAATTG 1 cut(s) 310
MhlI GDGCHC 3 cut(s) 358, 375, 1209
MlsI TGGCCA 2 cut(s) 165, 518
MluNI TGGCCA 2 cut(s) 165, 518
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1120
MmeI TCCRAC 3 cut(s) 312, 435, 888
Mox20I TGGCCA 2 cut(s) 165, 518
MscI TGGCCA 2 cut(s) 165, 518
MseI TTAA 2 cut(s) 405, 534
MslI CAYNNNNRTG 3 cut(s) 159, 171, 228
Msp20I TGGCCA 2 cut(s) 165, 518
MspA1I CMGCKG 1 cut(s) 1019
MspI CCGG 2 cut(s) 423, 1217
MspR9I CCNGG 1 cut(s) 929
MunI CAATTG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 929
MwoI GCNNNNNNNGC 9 cut(s) 38, 113, 254, 263, 495, 815, 962, 1162, 1213
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 160
NdeII GATC 3 cut(s) 220, 544, 1138
NheI GCTAGC 1 cut(s) 961
NlaIII CATG 3 cut(s) 149, 164, 270
NlaIV GGNNCC 4 cut(s) 6, 570, 1178, 1276
NmeAIII GCCGAG 1 cut(s) 1303
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 367
PceI AGGCCT 1 cut(s) 447
PfeI GAWTC 2 cut(s) 200, 426
PflMI CCANNNNNTGG 1 cut(s) 312
PleI GAGTC 1 cut(s) 1120
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 1120
PpuMI RGGWCCY 3 cut(s) 320, 569, 1176
Psp5II RGGWCCY 3 cut(s) 320, 569, 1176
Psp6I CCWGG 1 cut(s) 927
PspGI CCWGG 1 cut(s) 927
PspN4I GGNNCC 4 cut(s) 6, 570, 1178, 1276
PspPI GGNCC 7 cut(s) 241, 320, 457, 569, 935, 1176, 1275
PspPPI RGGWCCY 3 cut(s) 320, 569, 1176
PstI CTGCAG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 4 cut(s) 144, 350, 675, 893
RsaNI GTAC 4 cut(s) 143, 349, 674, 892
RseI CAYNNNNRTG 3 cut(s) 159, 171, 228
SaqAI TTAA 2 cut(s) 405, 534
Sau3AI GATC 3 cut(s) 220, 544, 1138
Sau96I GGNCC 7 cut(s) 241, 320, 457, 569, 935, 1176, 1275
SchI GAGTC 1 cut(s) 1120
ScrFI CCNGG 1 cut(s) 929
SduI GDGCHC 3 cut(s) 358, 375, 1209
SexAI ACCWGGT 1 cut(s) 927
SfaNI GCATC 4 cut(s) 221, 507, 673, 779
SfcI CTRYAG 2 cut(s) 207, 582
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 6 cut(s) 241, 320, 457, 569, 935, 1176
SmiMI CAYNNNNRTG 3 cut(s) 159, 171, 228
SmlI CTYRAG 1 cut(s) 1202
SmoI CTYRAG 1 cut(s) 1202
SpeI ACTAGT 1 cut(s) 713
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 7 cut(s) 133, 178, 487, 495, 706, 786, 1247
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 2 cut(s) 690, 724
SspMI CTAG 4 cut(s) 600, 680, 714, 962
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 927
StyI CCWWGG 2 cut(s) 160, 1211
TaaI ACNGT 4 cut(s) 173, 353, 583, 1151
TaqII GACCGA 1 cut(s) 258
TatI WGTACW 4 cut(s) 142, 348, 673, 891
TauI GCSGC 4 cut(s) 135, 180, 498, 1249
TfiI GAWTC 2 cut(s) 200, 426
Tru1I TTAA 2 cut(s) 405, 534
Tru9I TTAA 2 cut(s) 405, 534
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 8 cut(s) 116, 129, 206, 209, 728, 1196, 1249, 1282
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 1 cut(s) 760
Van91I CCANNNNNTGG 1 cut(s) 312
VneI GTGCAC 1 cut(s) 354
VpaK11BI GGWCC 6 cut(s) 241, 320, 457, 569, 935, 1176
XapI RAATTY 4 cut(s) 982, 1039, 1048, 1099
XceI RCATGY 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 2 cut(s) 235, 389
XspI CTAG 4 cut(s) 600, 680, 714, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.