Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Reverse (-)

14090489 .. 14094902

Gene Structure 4414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGTTTGAAAGATATTGGGTCCAAATTGCCACCGGGGTTTCGATTTCATCCAAGTGATGAAGAGTTGGTTTGTCATTATCTTTGCAACAAGATTAGGGCCAAATCTGATCATGGTGATGTTGATGATGATGATGATGATGTTGATGAAGCTTTGAAGGGTTCTACTGATCTTGTGGAGATTGACTTGCATATCTGTGAGCCATGGGAGCTTCCTGATGTGGCAAAGTTAAACGCAAAGGAATGGTACTTCTTCAGTTTCCGTGATCGAAAGTATGCTACTGGATATCGCACGAACAGAGCGACAGTAAGCGGATACTGGAAAGCAACAGGAAAAGATCGAACGGTGATGGATCCACGTACAAGGCAATTGGTAGGGATGAGAAAAACACTAGTGTTCTACAGAAACAGAGCACCAAATGGGATCAAAACTACTTGGATCATGCACGAGTTCCGTCTTGAGTGTCCTAACATCCCACCTAAGGAAGACTGGGTCTTGTGCAGAGTGTTCAACAAAGGCAGAGACTCATCGCTACAAGACAATAATTATTATAACAATGATAATCAGACGCAAAGGCTTGAAGTTAATGACGCTCCGGATCTTAATTACAACAATCAGTTGCCACCTTTGCTATCATCCCCTCCTCATAATCATCAACATGAGAAGATGAAAATCCAAGTTTGTGATCAGTGGGAGCAGCTAATGAAGCAGCCTTCAAGGACCACCGGCCACCCCTATCATCACCATTGTCATCATCAAACCATAGCATGTGGTTGGGAGCAGATGATGATCGGTTCGCTGTCATCACCTTCGAGTCATGGCCCTGATCACGAGTCCTTGCTAAATTTGCTTTACGTCGACAATAACAACAGTGTCAACATCAGTGGTGATCATCATCAGAATTATGAGAAGATTTTGTTGTCATCACTAGACATGACGAGTTTGGATCACGACAAGACATGTATGGGATCATCATCGGATGGTGGTATGGTCTCTGATCTTCACATGGAATGTGGTGGATTGAGTTTTGAGACCGAAAATATCCTCGCTTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

352

Amino Acids

40.43

Weight (kDa)

5.68

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 137	2.3e-27	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AccI	GTMKAC	1 cut(s)	858
AccIII	TCCGGA	1 cut(s)	595
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	7 cut(s)	347, 360, 431, 446, 606, 954, 976
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	844
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	248, 361
AfiI	CCNNNNNNNGG	1 cut(s)	481
AflIII	ACRYGT	1 cut(s)	959
AgsI	TTSAA	5 cut(s)	10, 157, 511, 581, 717
AhlI	ACTAGT	1 cut(s)	391
AluBI	AGCT	3 cut(s)	152, 211, 700
AluI	AGCT	3 cut(s)	152, 211, 700
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	3 cut(s)	516, 997, 1025
AlwI	GGATC	7 cut(s)	347, 360, 431, 446, 606, 954, 976
Aor13HI	TCCGGA	1 cut(s)	595
AoxI	GGCC	3 cut(s)	99, 727, 820
ApeKI	GCWGC	2 cut(s)	697, 709
ApoI	RAATTY	1 cut(s)	844
AspS9I	GGNCC	4 cut(s)	21, 99, 720, 821
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	5 cut(s)	128, 358, 734, 798, 899
AvaII	GGWCC	2 cut(s)	21, 720
AxyI	CCTNAGG	1 cut(s)	480
BamHI	GGATCC	1 cut(s)	352
BauI	CACGAG	2 cut(s)	446, 830
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	709, 721
BccI	CCATC	2 cut(s)	343, 974
BciVI	GTATCC	1 cut(s)	308
BclI	TGATCA	4 cut(s)	109, 685, 826, 889
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	3 cut(s)	516, 997, 1025
BcuI	ACTAGT	1 cut(s)	391
BfaI	CTAG	2 cut(s)	392, 929
BfmI	CTRYAG	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	308
BisI	GCNGC	2 cut(s)	698, 710
BlsI	GCNGC	2 cut(s)	699, 711
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	2 cut(s)	21, 720
BmgT120I	GGNCC	4 cut(s)	21, 99, 720, 821
BmiI	GGNNCC	2 cut(s)	22, 354
BmrFI	CCNGG	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	359
BsaBI	GATNNNNATC	4 cut(s)	671, 788, 894, 973
BsaI	GGTCTC	2 cut(s)	997, 1025
BsaJI	CCNNGG	2 cut(s)	35, 203
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	3 cut(s)	286, 323, 494
Bse21I	CCTNAGG	1 cut(s)	480
Bse8I	GATNNNNATC	4 cut(s)	671, 788, 894, 973
BseAI	TCCGGA	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	35, 203
BseGI	GGATG	5 cut(s)	49, 384, 471, 635, 985
BseJI	GATNNNNATC	4 cut(s)	671, 788, 894, 973
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseNI	ACTGG	3 cut(s)	286, 323, 494
BseRI	GAGGAG	1 cut(s)	633
BseXI	GCAGC	2 cut(s)	709, 721
BsgI	GTGCAG	1 cut(s)	520
BshFI	GGCC	3 cut(s)	101, 729, 822
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	3 cut(s)	35, 596, 726
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	3 cut(s)	516, 997, 1025
BsnI	GGCC	3 cut(s)	101, 729, 822
Bso31I	GGTCTC	2 cut(s)	997, 1025
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp13I	TCCGGA	1 cut(s)	595
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	3 cut(s)	101, 729, 822
BspEI	TCCGGA	1 cut(s)	595
BspLI	GGNNCC	2 cut(s)	22, 354
BspPI	GGATC	7 cut(s)	347, 360, 431, 446, 606, 954, 976
BspTNI	GGTCTC	2 cut(s)	997, 1025
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	3 cut(s)	286, 323, 494
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	2 cut(s)	35, 203
BssSI	CACGAG	2 cut(s)	446, 830
BssT1I	CCWWGG	1 cut(s)	203
Bst2BI	CACGAG	2 cut(s)	446, 830
Bst4CI	ACNGT	3 cut(s)	307, 346, 872
Bst6I	CTCTTC	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	5 cut(s)	49, 384, 471, 635, 985
BstMAI	GTCTC	3 cut(s)	516, 997, 1025
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 628, 706, 847
BstNSI	RCATGY	2 cut(s)	771, 963
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	709, 721
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	2 cut(s)	352, 598
BstYI	RGATCY	2 cut(s)	352, 598
Bsu36I	CCTNAGG	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	3 cut(s)	101, 729, 822
BtgI	CCRYGG	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	513
BtsCI	GGATG	5 cut(s)	49, 384, 471, 635, 985
BtsIMutI	CAGTG	3 cut(s)	695, 877, 889
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	4 cut(s)	21, 99, 720, 821
CseI	GACGC	2 cut(s)	577, 599
Csp6I	GTAC	2 cut(s)	247, 360
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviAII	CATG	9 cut(s)	113, 204, 442, 659, 768, 818, 934, 960, 1006
CviJI	RGCY	9 cut(s)	101, 152, 202, 211, 577, 700, 712, 729, 822
CviKI_1	RGCY	9 cut(s)	101, 152, 202, 211, 577, 700, 712, 729, 822
CviQI	GTAC	2 cut(s)	247, 360
DdeI	CTNAG	1 cut(s)	480
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	203
Eco31I	GGTCTC	2 cut(s)	997, 1025
Eco32I	GATATC	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	21, 720
Eco57I	CTGAAG	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	9 cut(s)	116, 207, 445, 662, 771, 821, 937, 963, 1009
FatI	CATG	9 cut(s)	112, 203, 441, 658, 767, 817, 933, 959, 1005
FbaI	TGATCA	4 cut(s)	109, 685, 826, 889
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	2 cut(s)	698, 710
FokI	GGATG	5 cut(s)	36, 391, 458, 622, 992
Fsp4HI	GCNGC	2 cut(s)	698, 710
FspBI	CTAG	2 cut(s)	392, 929
GluI	GCNGC	2 cut(s)	698, 710
HaeIII	GGCC	3 cut(s)	101, 729, 822
HapII	CCGG	3 cut(s)	35, 596, 726
HgaI	GACGC	2 cut(s)	577, 599
Hin1II	CATG	9 cut(s)	116, 207, 445, 662, 771, 821, 937, 963, 1009
HincII	GTYRAC	2 cut(s)	859, 877
HindII	GTYRAC	2 cut(s)	859, 877
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	3 cut(s)	524, 814, 833
HpaII	CCGG	3 cut(s)	35, 596, 726
HphI	GGTGA	5 cut(s)	128, 358, 734, 798, 899
Hpy166II	GTNNAC	2 cut(s)	859, 877
Hpy188I	TCNGA	5 cut(s)	109, 567, 900, 979, 997
Hpy188III	TCNNGA	5 cut(s)	215, 458, 596, 830, 950
Hpy8I	GTNNAC	2 cut(s)	859, 877
Hpy99I	CGWCG	1 cut(s)	860
HpyAV	CCTTC	3 cut(s)	151, 723, 819
HpyCH4III	ACNGT	3 cut(s)	307, 346, 872
HpyCH4IV	ACGT	2 cut(s)	358, 855
HpyCH4V	TGCA	4 cut(s)	87, 190, 445, 501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 628, 706, 847
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	2 cut(s)	358, 855
Hsp92II	CATG	9 cut(s)	116, 207, 445, 662, 771, 821, 937, 963, 1009
Kpn2I	TCCGGA	1 cut(s)	595
Ksp22I	TGATCA	4 cut(s)	109, 685, 826, 889
LmnI	GCTCC	4 cut(s)	208, 598, 694, 778
LpnPI	CCDG	9 cut(s)	48, 228, 267, 304, 315, 475, 609, 739, 837
Lsp1109I	GCAGC	2 cut(s)	709, 721
MaeI	CTAG	2 cut(s)	392, 929
MaeII	ACGT	2 cut(s)	358, 855
MboII	GAAGA	6 cut(s)	74, 244, 497, 676, 922, 992
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	2 cut(s)	352, 598
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	6 cut(s)	26, 368, 544, 604, 844, 901
MlyI	GAGTC	3 cut(s)	518, 823, 842
MnlI	CCTC	3 cut(s)	651, 654, 1055
MroI	TCCGGA	1 cut(s)	595
MseI	TTAA	3 cut(s)	230, 585, 603
MslI	CAYNNNNRTG	4 cut(s)	54, 117, 195, 657
MspI	CCGG	3 cut(s)	35, 596, 726
MspR9I	CCNGG	1 cut(s)	36
MunI	CAATTG	1 cut(s)	368
MwoI	GCNNNNNNNGC	4 cut(s)	208, 628, 706, 847
NciI	CCSGG	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	203
NlaIII	CATG	9 cut(s)	116, 207, 445, 662, 771, 821, 937, 963, 1009
NlaIV	GGNNCC	2 cut(s)	22, 354
NspI	RCATGY	2 cut(s)	771, 963
PciI	ACATGT	1 cut(s)	959
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PflFI	GACNNNGTC	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	699, 711
PleI	GAGTC	3 cut(s)	518, 822, 841
PpsI	GAGTC	3 cut(s)	518, 822, 841
Ppu21I	YACGTR	1 cut(s)	359
PscI	ACATGT	1 cut(s)	959
PsiI	TTATAA	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	22, 354
PspPI	GGNCC	4 cut(s)	21, 99, 720, 821
PsuI	RGATCY	2 cut(s)	352, 598
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	2 cut(s)	248, 361
RsaNI	GTAC	2 cut(s)	247, 360
RseI	CAYNNNNRTG	4 cut(s)	54, 117, 195, 657
SalI	GTCGAC	1 cut(s)	857
SaqAI	TTAA	3 cut(s)	230, 585, 603
SatI	GCNGC	2 cut(s)	698, 710
Sau96I	GGNCC	4 cut(s)	21, 99, 720, 821
SchI	GAGTC	3 cut(s)	518, 823, 842
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	8 cut(s)	154, 213, 361, 481, 628, 702, 811, 858
SfcI	CTRYAG	1 cut(s)	400
SinI	GGWCC	2 cut(s)	21, 720
SmiMI	CAYNNNNRTG	4 cut(s)	54, 117, 195, 657
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SpeI	ACTAGT	1 cut(s)	391
Sse9I	AATT	6 cut(s)	26, 368, 544, 604, 844, 901
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	2 cut(s)	392, 929
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	3 cut(s)	307, 346, 872
TaiI	ACGT	2 cut(s)	361, 858
TaqI	TCGA	5 cut(s)	43, 268, 340, 812, 858
TaqII	GACCGA	1 cut(s)	1049
TasI	AATT	6 cut(s)	26, 368, 544, 604, 844, 901
Tru1I	TTAA	3 cut(s)	230, 585, 603
Tru9I	TTAA	3 cut(s)	230, 585, 603
TscAI	CASTG	3 cut(s)	695, 877, 889
TseI	GCWGC	2 cut(s)	697, 709
TspDTI	ATGAA	5 cut(s)	38, 75, 162, 683, 719
TspGWI	ACGGA	2 cut(s)	251, 443
TspRI	CASTG	3 cut(s)	695, 877, 889
Tth111I	GACNNNGTC	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	21, 720
XapI	RAATTY	1 cut(s)	844
XceI	RCATGY	2 cut(s)	771, 963
XmiI	GTMKAC	1 cut(s)	858
XspI	CTAG	2 cut(s)	392, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.