Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Forward (+)

20115448 .. 20119485

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G221900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGGCTTAGAGACATTGGAGCTACACTGCCTCCTGGGTTTCGGTTCTATCCCAGCGACGAGGAGCTGGTCTGCCACTATCTGTTCAAGAAGATCACGAATGAGGAAGCTTTGAAGGGGACTTTGGTTGAAATTGACTTGCATATCTGCGAGCCATGGCAGCTTCCTGAGGTGGCAAAGCTGAATGCCAACGAGTGGTACTTCTTCAGCTTCCGTGACCGCAAGTATGCCACGGGGTTTCGAACCAATCGGGCAACGACATCTGGGTACTGGAAGGCAACAGGGAAAGATCGGATGGTGATGGAGCCAGGAACAGGGGAGATTGTAGGGATGAGAAAGACTTTGGTGTTCTATCGGAACAGAGCTCCTAATGGAATAAAAACTGGTTGGATTATGCATGAGTTTCGGCTGGAGACCCCACACATGCCTCCTAAGGAAGACTGGGTTTTGTGCAGAGTTTTCCACAAAGGCAAGGGAGAAGAGAACACCAAACTCAGCCCCCATGATTTTATGTTGGAGACCACATCCTGCACTATTCCTTTGAGCATGGAAAAATACTCATCTCCTCCAACTCAAGACCAAACCATGCCTCGTGGGTACAACCAGATGCCCTCATTTTCCACACCACCACCCCGCCACAGCCACAACCAAAGCAACTCTTTGCTGAATCTCCTCCAGTTTCCTCAGGAAAAATACAGCAACAACTCCGTTCCCGAATTAGGCGCTAAAAACGACGACGAATATGGGTTTTTATGGGACATGAGCTTGGAAGAAACTAGCTTCGAAAATGGGGTGGCTCCAGATATGGACGAAATGAGATTTGAGATGGATCACAACAGCATGGTTTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

285

Amino Acids

32.87

Weight (kDa)

5.64

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	195
AciI	CCGC	2 cut(s)	220, 634
AclWI	GGATC	1 cut(s)	837
AcuI	CTGAAG	1 cut(s)	190
AfaI	GTAC	3 cut(s)	200, 269, 599
AfiI	CCNNNNNNNGG	3 cut(s)	195, 314, 719
AgsI	TTSAA	3 cut(s)	88, 115, 131
AjnI	CCWGG	2 cut(s)	34, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	9 cut(s)	23, 67, 110, 163, 181, 210, 365, 765, 780
AluI	AGCT	9 cut(s)	23, 67, 110, 163, 181, 210, 365, 765, 780
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	3 cut(s)	6, 407, 512
AlwI	GGATC	1 cut(s)	837
ApeKI	GCWGC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	725
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	2 cut(s)	241, 783
AxyI	CCTNAGG	3 cut(s)	168, 432, 684
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	3 cut(s)	289, 295, 820
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	2 cut(s)	36, 309
BcoDI	GTCTC	3 cut(s)	6, 407, 512
BfaI	CTAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	726
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	2 cut(s)	36, 309
BmiI	GGNNCC	2 cut(s)	306, 798
BmrFI	CCNGG	2 cut(s)	36, 309
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	3 cut(s)	431, 659, 783
Bpu14I	TTCGAA	2 cut(s)	241, 783
BpuEI	CTTGAG	1 cut(s)	558
BsaI	GGTCTC	2 cut(s)	407, 512
BsaJI	CCNNGG	3 cut(s)	35, 155, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 314, 719
Bse1I	ACTGG	4 cut(s)	275, 388, 446, 676
Bse21I	CCTNAGG	3 cut(s)	168, 432, 684
BseBI	CCWGG	2 cut(s)	36, 309
BseDI	CCNNGG	3 cut(s)	35, 155, 231
BseGI	GGATG	3 cut(s)	300, 336, 524
BseLI	CCNNNNNNNGG	3 cut(s)	195, 314, 719
BseMII	CTCAG	3 cut(s)	159, 508, 698
BseNI	ACTGG	4 cut(s)	275, 388, 446, 676
BseRI	GAGGAG	3 cut(s)	77, 555, 662
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	53
BsgI	GTGCAG	2 cut(s)	472, 514
BsiHKAI	GWGCWC	1 cut(s)	367
BslFI	GGGAC	2 cut(s)	133, 770
BslI	CCNNNNNNNGG	3 cut(s)	195, 314, 719
BsmAI	GTCTC	3 cut(s)	6, 407, 512
BsmFI	GGGAC	2 cut(s)	133, 770
BsmI	GAATGC	1 cut(s)	190
Bso31I	GGTCTC	2 cut(s)	407, 512
Bsp119I	TTCGAA	2 cut(s)	241, 783
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	93, 289, 829
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	2 cut(s)	220, 634
BspCNI	CTCAG	3 cut(s)	160, 507, 697
BspLI	GGNNCC	2 cut(s)	306, 798
BspPI	GGATC	1 cut(s)	837
BspT104I	TTCGAA	2 cut(s)	241, 783
BspTNI	GGTCTC	2 cut(s)	407, 512
BsrI	ACTGG	4 cut(s)	275, 388, 446, 676
BssECI	CCNNGG	3 cut(s)	35, 155, 231
BssMI	GATC	3 cut(s)	93, 289, 829
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	36, 309
Bst6I	CTCTTC	1 cut(s)	474
BstBI	TTCGAA	2 cut(s)	241, 783
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	5 cut(s)	8, 168, 432, 494, 684
BstDSI	CCRYGG	2 cut(s)	155, 231
BstF5I	GGATG	3 cut(s)	300, 336, 524
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	3 cut(s)	96, 292, 832
BstMAI	GTCTC	3 cut(s)	6, 407, 512
BstMBI	GATC	3 cut(s)	93, 289, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	2 cut(s)	36, 309
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	34, 307
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	444
Bsu36I	CCTNAGG	3 cut(s)	168, 432, 684
BtgI	CCRYGG	2 cut(s)	155, 231
BtsCI	GGATG	3 cut(s)	300, 336, 524
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	199, 268, 598
CviAII	CATG	8 cut(s)	156, 398, 424, 503, 547, 586, 760, 841
CviQI	GTAC	3 cut(s)	199, 268, 598
DdeI	CTNAG	5 cut(s)	8, 168, 432, 494, 684
DpnI	GATC	3 cut(s)	95, 291, 831
DpnII	GATC	3 cut(s)	93, 289, 829
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	2 cut(s)	407, 512
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	190
Eco81I	CCTNAGG	3 cut(s)	168, 432, 684
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	34, 307
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	8 cut(s)	159, 401, 427, 506, 550, 589, 763, 844
FalI	AAGNNNNNCTT	2 cut(s)	643, 675
FaqI	GGGAC	2 cut(s)	133, 770
FatI	CATG	8 cut(s)	155, 397, 423, 502, 546, 585, 759, 840
FauI	CCCGC	1 cut(s)	641
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	3 cut(s)	307, 343, 511
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	777
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	1 cut(s)	161
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	3 cut(s)	431, 659, 783
HaeII	RGCGCY	1 cut(s)	726
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	8 cut(s)	159, 401, 427, 506, 550, 589, 763, 844
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	667
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	294, 357
Hpy188III	TCNNGA	7 cut(s)	88, 97, 167, 575, 686, 713, 800
Hpy99I	CGWCG	3 cut(s)	62, 737, 740
HpyAV	CCTTC	2 cut(s)	109, 268
HpyCH4V	TGCA	4 cut(s)	142, 397, 453, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	5 cut(s)	8, 168, 432, 494, 684
Hsp92II	CATG	8 cut(s)	159, 401, 427, 506, 550, 589, 763, 844
HspAI	GCGC	1 cut(s)	723
Kzo9I	GATC	3 cut(s)	93, 289, 829
LmnI	GCTCC	5 cut(s)	20, 64, 304, 370, 802
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	1 cut(s)	777
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	3 cut(s)	95, 291, 831
MboI	GATC	3 cut(s)	93, 289, 829
MboII	GAAGA	5 cut(s)	103, 196, 449, 491, 782
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	2 cut(s)	132, 716
MmeI	TCCRAC	3 cut(s)	368, 495, 593
Mph1103I	ATGCAT	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	36, 309
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	36, 309
MwoI	GCNNNNNNNGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	3 cut(s)	93, 289, 829
NlaIII	CATG	8 cut(s)	159, 401, 427, 506, 550, 589, 763, 844
NlaIV	GGNNCC	2 cut(s)	306, 798
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	427
NspV	TTCGAA	2 cut(s)	241, 783
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	667
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	34, 307
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	2 cut(s)	34, 307
PspN4I	GGNNCC	2 cut(s)	306, 798
RsaI	GTAC	3 cut(s)	200, 269, 599
RsaNI	GTAC	3 cut(s)	199, 268, 598
SacI	GAGCTC	1 cut(s)	367
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	3 cut(s)	93, 289, 829
ScrFI	CCNGG	2 cut(s)	36, 309
SduI	GDGCHC	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	597
SfuI	TTCGAA	2 cut(s)	241, 783
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	2 cut(s)	132, 716
SsiI	CCGC	2 cut(s)	220, 634
SspMI	CTAG	1 cut(s)	777
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	34, 307
StyI	CCWWGG	1 cut(s)	155
TaqI	TCGA	2 cut(s)	241, 783
TasI	AATT	2 cut(s)	132, 716
TfiI	GAWTC	1 cut(s)	667
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	215
TspGWI	ACGGA	2 cut(s)	203, 697
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	195
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	1 cut(s)	777
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.