Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Forward (+)

32282303 .. 32286443

Gene Structure 4141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1195300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGGCTGAGAGACATTGGAGCCACACTGCCTCCTGGGTTTCGGTTTTACCCCAGCGATGAGGAGCTGGTCTGCCATTATTTGTACAAAAAGATCACAAATGAAGAAGCTTTGAAGGGTACTTTGGTTGAAATTGACTTGCATATCTGCGAGCCATGGCAGCTTCCTGAGGTGGCCAAGCTGAATGCCAATGAGTGGTACTTCTTCAGCTTCCGTGACCGTAAGTATGCGACGGGGTTCCGGACCAACCGTGCGACGTCAACTGGATACTGGAAAGCAACAGGGAAAGATCGGCTGGTGATGGAGCCAGGAACTGGGGAGATCGTAGGGATGAGGAAGACTTTGGTGTTCTATCGGAACAGAGCTCCTAATGGAATCAAAACTGGTTGGATTATGCATGAGTTCCGGCTGGAGACCCCACATATGCCTCCTAAGGAAGACTGGGTTCTGTGCAGAGTTTTCTACAAAGGCAAGGGAGCAGAGGACAGCACCAAACTCAACCCCCATGACTTTATGTTGGAGACCACACCATGCACTGTTCCTTTAAATTTGGTTCCACCTCCTCCAACTTATGACCAAACAATGCCTTGTGTGTACAACCAAAACCACAGCCAAAGCAACGCTTTCCTGAATCTCCTACAGCTTCCTCATCAAGAAAAATACACCAATTCCTCCGTCTCCGAATTAAACACGAAAAACGACGATGAATATGGGTTTCTATGGGACATGAATTTAGAAGAAGGCAGCTTCGACAACGGGGTGGCTCCAAATTTGGATGAGATGGGTTTTCAGGTGGATGAGAACAGCATGGTTTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

274

Amino Acids

31.44

Weight (kDa)

5.23

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 137	5.4e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	260
AccB7I	CCANNNNNTGG	2 cut(s)	195, 314
AccIII	TCCGGA	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	3 cut(s)	547, 730, 769
AcuI	CTGAAG	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	4 cut(s)	86, 121, 200, 596
AfiI	CCNNNNNNNGG	2 cut(s)	195, 314
AgsI	TTSAA	2 cut(s)	115, 131
AjnI	CCWGG	2 cut(s)	34, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	8 cut(s)	67, 110, 163, 181, 210, 365, 643, 747
AluI	AGCT	8 cut(s)	67, 110, 163, 181, 210, 365, 643, 747
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	4 cut(s)	6, 407, 515, 682
AlwNI	CAGNNNCTG	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	160, 744
ApoI	RAATTY	3 cut(s)	547, 730, 769
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	243
AxyI	CCTNAGG	2 cut(s)	168, 432
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BalI	TGGCCA	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	344, 444
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	172, 756
BccI	CCATC	2 cut(s)	295, 775
BciT130I	CCWGG	2 cut(s)	36, 309
BciVI	GTATCC	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	6, 407, 515, 682
BfmI	CTRYAG	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	2 cut(s)	161, 745
BlsI	GCNGC	2 cut(s)	162, 746
Bme1390I	CCNGG	2 cut(s)	36, 309
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	5 cut(s)	22, 239, 306, 555, 765
BmrFI	CCNGG	2 cut(s)	36, 309
BmrI	ACTGGG	2 cut(s)	324, 451
BmuI	ACTGGG	2 cut(s)	324, 451
BpiI	GAAGAC	2 cut(s)	344, 444
BpmI	CTGGAG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	257
BsaI	GGTCTC	2 cut(s)	407, 515
BsaJI	CCNNGG	2 cut(s)	35, 155
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 314
Bse1I	ACTGG	5 cut(s)	268, 275, 319, 388, 446
Bse21I	CCTNAGG	2 cut(s)	168, 432
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	36, 309
BseDI	CCNNGG	2 cut(s)	35, 155
BseGI	GGATG	3 cut(s)	336, 781, 802
BseLI	CCNNNNNNNGG	2 cut(s)	195, 314
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	5 cut(s)	268, 275, 319, 388, 446
BseRI	GAGGAG	2 cut(s)	77, 552
BseXI	GCAGC	2 cut(s)	172, 756
BseYI	CCCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	472
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	241, 406
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	2 cut(s)	195, 314
BsmAI	GTCTC	4 cut(s)	6, 407, 515, 682
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	2 cut(s)	407, 515
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	240
Bsp1407I	TGTACA	2 cut(s)	84, 594
Bsp143I	GATC	3 cut(s)	93, 289, 321
Bsp19I	CCATGG	1 cut(s)	155
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	160
BspEI	TCCGGA	1 cut(s)	240
BspLI	GGNNCC	5 cut(s)	22, 239, 306, 555, 765
BspTNI	GGTCTC	2 cut(s)	407, 515
BsrGI	TGTACA	2 cut(s)	84, 594
BsrI	ACTGG	5 cut(s)	268, 275, 319, 388, 446
BssECI	CCNNGG	2 cut(s)	35, 155
BssMI	GATC	3 cut(s)	93, 289, 321
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	36, 309
Bst4CI	ACNGT	3 cut(s)	221, 251, 538
BstACI	GRCGYC	1 cut(s)	257
BstAUI	TGTACA	2 cut(s)	84, 594
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	3 cut(s)	8, 168, 432
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	3 cut(s)	336, 781, 802
BstKTI	GATC	3 cut(s)	96, 292, 324
BstMAI	GTCTC	4 cut(s)	6, 407, 515, 682
BstMBI	GATC	3 cut(s)	93, 289, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	2 cut(s)	36, 309
BstSCI	CCNGG	2 cut(s)	34, 307
BstSFI	CTRYAG	1 cut(s)	638
BstV1I	GCAGC	2 cut(s)	172, 756
BstV2I	GAAGAC	2 cut(s)	344, 444
Bsu36I	CCTNAGG	2 cut(s)	168, 432
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	155
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	336, 781, 802
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	26, 534
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	4 cut(s)	85, 120, 199, 595
CviAII	CATG	6 cut(s)	156, 398, 506, 531, 727, 808
CviQI	GTAC	4 cut(s)	85, 120, 199, 595
DdeI	CTNAG	3 cut(s)	8, 168, 432
DpnI	GATC	3 cut(s)	95, 291, 323
DpnII	GATC	3 cut(s)	93, 289, 321
DraI	TTTAAA	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	2 cut(s)	407, 515
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	190
Eco81I	CCTNAGG	2 cut(s)	168, 432
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	34, 307
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	6 cut(s)	159, 401, 509, 534, 730, 811
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	6 cut(s)	155, 397, 505, 530, 726, 807
FauNDI	CATATG	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	161, 745
FokI	GGATG	3 cut(s)	343, 788, 809
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	2 cut(s)	161, 745
GluI	GCNGC	2 cut(s)	161, 745
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	241, 406
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	6 cut(s)	159, 401, 509, 534, 730, 811
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	2 cut(s)	375, 631
HpaII	CCGG	2 cut(s)	241, 406
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	261, 595
Hpy188I	TCNGA	2 cut(s)	357, 682
Hpy188III	TCNNGA	4 cut(s)	167, 241, 628, 653
Hpy8I	GTNNAC	2 cut(s)	261, 595
Hpy99I	CGWCG	3 cut(s)	235, 259, 704
HpyAV	CCTTC	2 cut(s)	109, 734
HpyCH4III	ACNGT	3 cut(s)	221, 251, 538
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	4 cut(s)	142, 397, 453, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	3 cut(s)	8, 168, 432
HpySE526I	ACGT	1 cut(s)	257
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	6 cut(s)	159, 401, 509, 534, 730, 811
Kpn2I	TCCGGA	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	93, 289, 321
LmnI	GCTCC	6 cut(s)	20, 64, 304, 370, 476, 769
Lsp1109I	GCAGC	2 cut(s)	172, 756
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	3 cut(s)	95, 291, 323
MboI	GATC	3 cut(s)	93, 289, 321
MboII	GAAGA	5 cut(s)	116, 196, 349, 449, 749
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	6 cut(s)	132, 547, 667, 683, 730, 769
MluNI	TGGCCA	1 cut(s)	176
MmeI	TCCRAC	3 cut(s)	368, 498, 590
Mox20I	TGGCCA	1 cut(s)	176
Mph1103I	ATGCAT	1 cut(s)	399
MroI	TCCGGA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	2 cut(s)	545, 686
Msp20I	TGGCCA	1 cut(s)	176
MspI	CCGG	2 cut(s)	241, 406
MspR9I	CCNGG	2 cut(s)	36, 309
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	36, 309
MwoI	GCNNNNNNNGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	155
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	3 cut(s)	93, 289, 321
NlaIII	CATG	6 cut(s)	159, 401, 509, 534, 730, 811
NlaIV	GGNNCC	5 cut(s)	22, 239, 306, 555, 765
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	399
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	375, 631
PflMI	CCANNNNNTGG	2 cut(s)	195, 314
PkrI	GCNGC	2 cut(s)	162, 746
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	34, 307
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	2 cut(s)	34, 307
PspN4I	GGNNCC	5 cut(s)	22, 239, 306, 555, 765
PspPI	GGNCC	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	4 cut(s)	86, 121, 200, 596
RsaNI	GTAC	4 cut(s)	85, 120, 199, 595
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	545, 686
SatI	GCNGC	2 cut(s)	161, 745
Sau3AI	GATC	3 cut(s)	93, 289, 321
Sau96I	GGNCC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	36, 309
SduI	GDGCHC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	638
SinI	GGWCC	1 cut(s)	243
Sse9I	AATT	6 cut(s)	132, 547, 667, 683, 730, 769
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	34, 307
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	3 cut(s)	221, 251, 538
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	750
TasI	AATT	6 cut(s)	132, 547, 667, 683, 730, 769
TatI	WGTACW	2 cut(s)	84, 594
TfiI	GAWTC	2 cut(s)	375, 631
Tru1I	TTAA	2 cut(s)	545, 686
Tru9I	TTAA	2 cut(s)	545, 686
TscAI	CASTG	2 cut(s)	33, 541
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	160, 744
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	117, 720, 743
TspGWI	ACGGA	2 cut(s)	203, 664
TspRI	CASTG	2 cut(s)	33, 541
Van91I	CCANNNNNTGG	2 cut(s)	195, 314
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	3 cut(s)	547, 730, 769
ZraI	GACGTC	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.