Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Forward (+)

18976789 .. 18980656

Gene Structure 3868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGGCTGAGAGACATTGGAGCTACACTGCCTCCTGGGTTTCGGTTTTACCCCAGCGATGAGGAGCTGGTCTGCCATTATTTGTACAAAAAGATCACGAATGAAGAAGCTTTGAAGGGTACTTTGGTTGAAATTGACTTGCATACCTGCGAGCCATGGCAGCTTCCCGAGGTGGCAAAGCTGAATGCCAATGAGTGGTACTTCTTCAGCTTCCGCGACCGTAAGTATGCGACGGGGTTCCGGACCAATCGGGCGACGACATCTGGATACTGGAAAGCCACGGGGAAAGATCGGATGGTGATGGAGCCAGGAACTGGGGAGATCGTAGGGATGAGAAAGACTTTGGTGTTCTATCGGAATAGAGCTCCTAATGGAATCAAAACTGGTTGGATTATGCATGAGTTCCGGCTGGAGACGCCACATATGCCTCCTAAGGAAGACTGGGTTTTGTGCAGAGTTTTCCACAAAGGCAAGGGAGCAGAGAACAGCACTAAACTCAGCCCCCATGATCTTATGTTGGAGACCACACCATGCACTGTTCCTCTAAATTTAGCTCCATCTCCTCCAACTCATGACCAAACAATGCCTTGTGTGTACAACCACAACCAAAGCAACTCTTTCCTGAATCTCCTACAGCTTTCTCATCAGGAGAAATACACCAACTCCTCCATCCCCGAATTAAACGCGAAAAACAACTGCGACTATGGGTTTCTATGGGACATGAATTTAGAAGACGGCAGCTTCGACAATGAGGTGGCTCCAAATTTGGACGAGATGAGATTTGAGGTGGATGGAACAGCATGGTTTTGCTCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

273

Amino Acids

31.3

Weight (kDa)

5.87

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 137	6.3e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	155
AccB7I	CCANNNNNTGG	2 cut(s)	195, 314
AccII	CGCG	2 cut(s)	216, 686
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	3 cut(s)	547, 724, 763
AcuI	CTGAAG	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	416
AfaI	GTAC	4 cut(s)	86, 121, 200, 596
AfiI	CCNNNNNNNGG	2 cut(s)	195, 314
AgsI	TTSAA	2 cut(s)	115, 131
AjnI	CCWGG	2 cut(s)	34, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	3 cut(s)	6, 407, 515
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	160, 738
ApoI	RAATTY	3 cut(s)	547, 724, 763
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	444, 738
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	172, 750
BccI	CCATC	5 cut(s)	289, 295, 565, 677, 785
BceAI	ACGGC	1 cut(s)	751
BciT130I	CCWGG	2 cut(s)	36, 309
BciVI	GTATCC	1 cut(s)	260
BcoDI	GTCTC	3 cut(s)	6, 407, 515
BfmI	CTRYAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	2 cut(s)	161, 739
BlsI	GCNGC	2 cut(s)	162, 740
Bme1390I	CCNGG	2 cut(s)	36, 309
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	3 cut(s)	239, 306, 759
BmrFI	CCNGG	2 cut(s)	36, 309
BmrI	ACTGGG	2 cut(s)	324, 451
BmuI	ACTGGG	2 cut(s)	324, 451
BpiI	GAAGAC	2 cut(s)	444, 738
BpmI	CTGGAG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	4 cut(s)	35, 155, 168, 279
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 647, 677
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 314
Bse1I	ACTGG	4 cut(s)	275, 319, 388, 446
Bse21I	CCTNAGG	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	36, 309
BseDI	CCNNGG	4 cut(s)	35, 155, 168, 279
BseGI	GGATG	4 cut(s)	300, 336, 669, 796
BseLI	CCNNNNNNNGG	2 cut(s)	195, 314
BseMII	CTCAG	1 cut(s)	511
BseNI	ACTGG	4 cut(s)	275, 319, 388, 446
BseRI	GAGGAG	3 cut(s)	77, 552, 655
BseXI	GCAGC	2 cut(s)	172, 750
BseYI	CCCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	472
Bsh1236I	CGCG	2 cut(s)	216, 686
Bsh1285I	CGRYCG	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	241, 406
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	2 cut(s)	195, 314
BsmAI	GTCTC	3 cut(s)	6, 407, 515
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	240
Bsp1407I	TGTACA	2 cut(s)	84, 594
Bsp143I	GATC	4 cut(s)	93, 289, 321, 508
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	510
BspEI	TCCGGA	1 cut(s)	240
BspFNI	CGCG	2 cut(s)	216, 686
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	3 cut(s)	239, 306, 759
BspMI	ACCTGC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	515
BsrGI	TGTACA	2 cut(s)	84, 594
BsrI	ACTGG	4 cut(s)	275, 319, 388, 446
BssECI	CCNNGG	4 cut(s)	35, 155, 168, 279
BssMI	GATC	4 cut(s)	93, 289, 321, 508
BssNI	GRCGYC	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	36, 309
Bst4CI	ACNGT	2 cut(s)	221, 538
BstACI	GRCGYC	1 cut(s)	416
BstAUI	TGTACA	2 cut(s)	84, 594
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	3 cut(s)	8, 432, 497
BstDSI	CCRYGG	2 cut(s)	155, 279
BstF5I	GGATG	4 cut(s)	300, 336, 669, 796
BstFNI	CGCG	2 cut(s)	216, 686
BstKTI	GATC	4 cut(s)	96, 292, 324, 511
BstMAI	GTCTC	3 cut(s)	6, 407, 515
BstMBI	GATC	4 cut(s)	93, 289, 321, 508
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 415, 424
BstNI	CCWGG	2 cut(s)	36, 309
BstSCI	CCNGG	2 cut(s)	34, 307
BstSFI	CTRYAG	1 cut(s)	632
BstUI	CGCG	2 cut(s)	216, 686
BstV1I	GCAGC	2 cut(s)	172, 750
BstV2I	GAAGAC	2 cut(s)	444, 738
Bsu36I	CCTNAGG	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	260
BtgI	CCRYGG	2 cut(s)	155, 279
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	4 cut(s)	300, 336, 669, 796
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	26, 534
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	4 cut(s)	85, 120, 199, 595
CviAII	CATG	7 cut(s)	156, 398, 506, 531, 572, 721, 801
CviQI	GTAC	4 cut(s)	85, 120, 199, 595
DdeI	CTNAG	3 cut(s)	8, 432, 497
DpnI	GATC	4 cut(s)	95, 291, 323, 510
DpnII	GATC	4 cut(s)	93, 289, 321, 508
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	190
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	34, 307
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	7 cut(s)	159, 401, 509, 534, 575, 724, 804
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	7 cut(s)	155, 397, 505, 530, 571, 720, 800
FauNDI	CATATG	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	161, 739
FokI	GGATG	4 cut(s)	307, 343, 656, 803
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	2 cut(s)	161, 739
GluI	GCNGC	2 cut(s)	161, 739
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	431
HapII	CCGG	2 cut(s)	241, 406
HgaI	GACGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	7 cut(s)	159, 401, 509, 534, 575, 724, 804
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	2 cut(s)	375, 625
HpaII	CCGG	2 cut(s)	241, 406
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	2 cut(s)	294, 357
Hpy188III	TCNNGA	7 cut(s)	97, 167, 241, 264, 572, 622, 647
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	2 cut(s)	235, 259
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	221, 538
HpyCH4V	TGCA	4 cut(s)	142, 397, 453, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 415, 424
HpyF3I	CTNAG	3 cut(s)	8, 432, 497
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	7 cut(s)	159, 401, 509, 534, 575, 724, 804
Kpn2I	TCCGGA	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	93, 289, 321, 508
LmnI	GCTCC	7 cut(s)	20, 64, 304, 370, 476, 559, 763
Lsp1109I	GCAGC	2 cut(s)	172, 750
MalI	GATC	4 cut(s)	95, 291, 323, 510
MboI	GATC	4 cut(s)	93, 289, 321, 508
MboII	GAAGA	4 cut(s)	116, 196, 449, 743
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	5 cut(s)	132, 547, 677, 724, 763
MmeI	TCCRAC	3 cut(s)	368, 498, 590
MnlI	CCTC	9 cut(s)	42, 55, 163, 438, 552, 573, 676, 745, 778
Mph1103I	ATGCAT	1 cut(s)	399
MroI	TCCGGA	1 cut(s)	240
MseI	TTAA	1 cut(s)	680
MspI	CCGG	2 cut(s)	241, 406
MspR9I	CCNGG	2 cut(s)	36, 309
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	36, 309
MvnI	CGCG	2 cut(s)	216, 686
MwoI	GCNNNNNNNGC	3 cut(s)	160, 415, 424
NcoI	CCATGG	1 cut(s)	155
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	4 cut(s)	93, 289, 321, 508
NlaIII	CATG	7 cut(s)	159, 401, 509, 534, 575, 724, 804
NlaIV	GGNNCC	3 cut(s)	239, 306, 759
NsiI	ATGCAT	1 cut(s)	399
PagI	TCATGA	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	375, 625
PflMI	CCANNNNNTGG	2 cut(s)	195, 314
PkrI	GCNGC	2 cut(s)	162, 740
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	34, 307
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	2 cut(s)	34, 307
PspN4I	GGNNCC	3 cut(s)	239, 306, 759
PspPI	GGNCC	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	4 cut(s)	86, 121, 200, 596
RsaNI	GTAC	4 cut(s)	85, 120, 199, 595
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	2 cut(s)	161, 739
Sau3AI	GATC	4 cut(s)	93, 289, 321, 508
Sau96I	GGNCC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	36, 309
SduI	GDGCHC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	632
SinI	GGWCC	1 cut(s)	243
Sse9I	AATT	5 cut(s)	132, 547, 677, 724, 763
SsiI	CCGC	1 cut(s)	214
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	34, 307
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	221, 538
TaqI	TCGA	1 cut(s)	744
TasI	AATT	5 cut(s)	132, 547, 677, 724, 763
TatI	WGTACW	2 cut(s)	84, 594
TfiI	GAWTC	2 cut(s)	375, 625
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TscAI	CASTG	2 cut(s)	33, 541
TseI	GCWGC	2 cut(s)	160, 738
TspDTI	ATGAA	2 cut(s)	117, 737
TspRI	CASTG	2 cut(s)	33, 541
Van91I	CCANNNNNTGG	2 cut(s)	195, 314
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	3 cut(s)	547, 724, 763
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.