Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Forward (+)

17695618 .. 17699425

Gene Structure 3808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGTCTGAGGGACATTGGAGCCACACTGCCTCCTGGGTTTCGATTTTATCCGAGCGATGAGGAGTTGGTCTGCCACTATCTCTATAAAAAGGTCACAAATGAGGAAGCTTTGAAGGGTACTCTGGTCGAAATTGACTTGCATACTTGTGAGCCATGGCAGCTTCCTGAGGTGGCAAAGCTGAACGCGAACGAGTGGTACTTCTTCAGCTTCCGTGACCGGAAGTACGCCACAGGGTTCAGGACCAACCGGGCGACGACGACCGGGTACTGGAAAGCTACCGGAAAAGACCGGATGGTGGTGGATCCGGGAACAGGGGAGATTGTAGGGATGAGGAAGACGCTGGTGTTCTATAGGAACAGAGCTCCGAATGGAATCAAAACTGGGTGGATCATGCATGAGTTTCGCCTCGAAACCCCACACATGCCTCCTAAGGAGGACTGGGTTCTGTGCAGGGTTTTCCACAAAGGGAAAGGAGAGATGAACAGCAACATGAGCCTCAGCCCTCATGATCTTATGTTGGAGAGCAACAAATCATGCACTGTTACATTGACATCTCCTCCTTCTCATCATGAGCAAAACATGCACTGTGGATATAGTAACCAGATCACCTCATTTTCCACCACACCAGTACCTCACCAGAGCCATAGCCATAGCCACAATAACCAAAGCAGTTCTCTGCTCAACCTCCTTCAGCTTTCTCAAGAAAAATTGACCGACTCCGTCACCGAAATAAGCGCAAAAAATGACGATGATTATGGATTTTTATGGGACATGAATCTGGAAGAAAGTAGCTTCGAAAATGGAACTTTGGACGACATGAGATTTGAGATGGAGAACAGCATGGTTTTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

286

Amino Acids

32.71

Weight (kDa)

5.8

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 137	1.3e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AclWI	GGATC	3 cut(s)	299, 312, 398
AcuI	CTGAAG	2 cut(s)	190, 677
AfaI	GTAC	5 cut(s)	121, 200, 227, 269, 633
AfiI	CCNNNNNNNGG	3 cut(s)	270, 298, 314
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	8 cut(s)	110, 163, 181, 210, 278, 365, 697, 795
AluI	AGCT	8 cut(s)	110, 163, 181, 210, 278, 365, 697, 795
Alw21I	GWGCWC	1 cut(s)	367
AlwI	GGATC	3 cut(s)	299, 312, 398
ApeKI	GCWGC	1 cut(s)	160
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	3 cut(s)	251, 265, 309
AsuHPI	GGTGA	3 cut(s)	601, 629, 718
AsuII	TTCGAA	1 cut(s)	798
AvaII	GGWCC	1 cut(s)	243
AxyI	CCTNAGG	2 cut(s)	168, 432
BaeI	ACNNNNGTAYC	4 cut(s)	111, 144, 615, 648
BamHI	GGATCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	289, 826
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	36
BcnI	CCSGG	3 cut(s)	251, 265, 309
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	4 cut(s)	36, 251, 265, 309
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	22, 306
BmrFI	CCNGG	4 cut(s)	36, 251, 265, 309
BmrI	ACTGGG	2 cut(s)	393, 451
BmuI	ACTGGG	2 cut(s)	393, 451
BpiI	GAAGAC	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	500
Bpu14I	TTCGAA	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	687
BpuMI	CCSGG	3 cut(s)	251, 265, 309
BsaJI	CCNNGG	2 cut(s)	35, 155
BsaWI	WCCGGW	3 cut(s)	219, 281, 291
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 544, 574
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 298, 314
Bse1I	ACTGG	4 cut(s)	275, 388, 446, 629
Bse21I	CCTNAGG	2 cut(s)	168, 432
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	35, 155
BseGI	GGATG	2 cut(s)	300, 336
BseLI	CCNNNNNNNGG	3 cut(s)	270, 298, 314
BseMII	CTCAG	2 cut(s)	159, 514
BseNI	ACTGG	4 cut(s)	275, 388, 446, 629
BseRI	GAGGAG	2 cut(s)	77, 549
BseXI	GCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	6 cut(s)	220, 250, 264, 282, 292, 308
BslFI	GGGAC	2 cut(s)	26, 785
BslI	CCNNNNNNNGG	3 cut(s)	270, 298, 314
BsmFI	GGGAC	2 cut(s)	26, 785
Bsp119I	TTCGAA	1 cut(s)	798
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	304, 390, 511, 606
Bsp19I	CCATGG	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	160, 513
BspFNI	CGCG	1 cut(s)	188
BspHI	TCATGA	2 cut(s)	508, 571
BspLI	GGNNCC	2 cut(s)	22, 306
BspPI	GGATC	3 cut(s)	299, 312, 398
BspT104I	TTCGAA	1 cut(s)	798
BsrI	ACTGG	4 cut(s)	275, 388, 446, 629
BssECI	CCNNGG	2 cut(s)	35, 155
BssMI	GATC	4 cut(s)	304, 390, 511, 606
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	544, 590
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstBI	TTCGAA	1 cut(s)	798
BstDEI	CTNAG	4 cut(s)	8, 168, 432, 500
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	300, 336
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	4 cut(s)	307, 393, 514, 609
BstMBI	GATC	4 cut(s)	304, 390, 511, 606
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 495, 583
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	2 cut(s)	427, 586
BstSCI	CCNGG	4 cut(s)	34, 249, 263, 307
BstSFI	CTRYAG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Bsu36I	CCTNAGG	2 cut(s)	168, 432
BtgI	CCRYGG	1 cut(s)	155
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	300, 336
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	3 cut(s)	26, 540, 586
CciI	TCATGA	2 cut(s)	508, 571
CfoI	GCGC	1 cut(s)	740
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	5 cut(s)	120, 199, 226, 268, 632
CviQI	GTAC	5 cut(s)	120, 199, 226, 268, 632
DdeI	CTNAG	4 cut(s)	8, 168, 432, 500
DpnI	GATC	4 cut(s)	306, 392, 513, 608
DpnII	GATC	4 cut(s)	304, 390, 511, 606
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	2 cut(s)	190, 677
Eco81I	CCTNAGG	2 cut(s)	168, 432
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	155
FaqI	GGGAC	2 cut(s)	26, 785
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	2 cut(s)	307, 343
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	161
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	1 cut(s)	161
HapII	CCGG	6 cut(s)	220, 250, 264, 282, 292, 308
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	740
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	3 cut(s)	375, 719, 778
HpaII	CCGG	6 cut(s)	220, 250, 264, 282, 292, 308
HphI	GGTGA	3 cut(s)	601, 629, 718
Hpy188I	TCNGA	4 cut(s)	9, 54, 369, 857
Hpy188III	TCNNGA	6 cut(s)	167, 241, 509, 572, 704, 782
Hpy99I	CGWCG	2 cut(s)	259, 262
HpyAV	CCTTC	3 cut(s)	109, 573, 701
HpyCH4III	ACNGT	2 cut(s)	544, 590
HpyCH4V	TGCA	5 cut(s)	142, 397, 453, 540, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 495, 583
HpyF3I	CTNAG	4 cut(s)	8, 168, 432, 500
HspAI	GCGC	1 cut(s)	738
Kzo9I	GATC	4 cut(s)	304, 390, 511, 606
LmnI	GCTCC	2 cut(s)	20, 370
Lsp1109I	GCAGC	1 cut(s)	172
MaeIII	GTNAC	5 cut(s)	94, 215, 544, 599, 724
MalI	GATC	4 cut(s)	306, 392, 513, 608
MboI	GATC	4 cut(s)	304, 390, 511, 606
MboII	GAAGA	3 cut(s)	196, 349, 797
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	2 cut(s)	132, 710
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	6 cut(s)	220, 250, 264, 282, 292, 308
MspR9I	CCNGG	4 cut(s)	36, 251, 265, 309
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	160, 495, 583
NciI	CCSGG	3 cut(s)	251, 265, 309
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	304, 390, 511, 606
NlaIV	GGNNCC	2 cut(s)	22, 306
NmuCI	GTSAC	3 cut(s)	94, 215, 724
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	2 cut(s)	427, 586
NspV	TTCGAA	1 cut(s)	798
PagI	TCATGA	2 cut(s)	508, 571
PfeI	GAWTC	2 cut(s)	375, 778
PflFI	GACNNNGTC	1 cut(s)	722
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	22, 306
PspPI	GGNCC	1 cut(s)	243
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PsuI	RGATCY	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	722
RsaI	GTAC	5 cut(s)	121, 200, 227, 269, 633
RsaNI	GTAC	5 cut(s)	120, 199, 226, 268, 632
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	367
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	4 cut(s)	304, 390, 511, 606
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	4 cut(s)	36, 251, 265, 309
SduI	GDGCHC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	798
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
Sse9I	AATT	2 cut(s)	132, 710
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	4 cut(s)	34, 249, 263, 307
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	544, 590
TaqI	TCGA	4 cut(s)	43, 129, 411, 798
TaqII	GACCGA	1 cut(s)	731
TasI	AATT	2 cut(s)	132, 710
TfiI	GAWTC	2 cut(s)	375, 778
TscAI	CASTG	3 cut(s)	33, 547, 593
TseFI	GTSAC	3 cut(s)	94, 215, 724
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	3 cut(s)	94, 215, 724
TspDTI	ATGAA	2 cut(s)	497, 791
TspGWI	ACGGA	2 cut(s)	203, 712
TspRI	CASTG	3 cut(s)	33, 547, 593
Tth111I	GACNNNGTC	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	243
XceI	RCATGY	2 cut(s)	427, 586
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.