Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Forward (+)

53741513 .. 53745462

Gene Structure 3950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCAAAAACTGATTATTGGTTCTGTGATTATTTTTCTGAATGAAGAGGTGGCAAAGCTGAACGCGAACGAGTGGTACTTCTTCAGCTTTCGTGACCGGAAGTACGCGACAGGGTTCAGAACCAACCGGGCGACGACGACCGGGTACTGGAAAGCTACCGGAAAAGACCGGATGGTGGTGGATCCGGGAACAGGGGACATCGTAGGGATGAGGAAGACGCTGGTGTTCTATCGGAACAGAGCTCCCAATGGAATTAAAACTGGGTGGATCATGCATGAGTTTCGCCTCGAGACCCCACACATGCCTCCCAAGGAGGACTGGGTTCTGTGCCGGGTTTTCCACAAAGGCAAAGGAGAGATGAACGACAACATGAACCTCAGTCCTCATGACCTTATGTTGGAGACCAAAACATCATGCACCGCTGCGTTAACATCTCCTCCAACTCATCATGACCAAAACATGCACTGTGGATATAGTAACCAGATCACCTCATTTTCCACCACGCCAGTACCTCACCAAAGCCATAGCCATAGCCACAATAACCAAAGCAATTCTCTGCTCAACCTCCTTCAGCTTTCTGAAGAAAAATATACCGACTCTATCACCGAAATAAGCGCAAAAAATGACGATGATTATGGATTTTTATGGGACATGAATCTTGAAGAAAATAGCTTTGAAACAGGTACTTTGGACGACATGAGATTTGAGATGGAGAACAGCATGGTTTTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

244

Amino Acids

28.08

Weight (kDa)

5.86

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	18 - 96	2.6e-24	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	65, 107
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	3 cut(s)	176, 189, 275
AcuI	CTGAAG	3 cut(s)	67, 554, 600
AfaI	GTAC	5 cut(s)	77, 104, 146, 510, 685
AfiI	CCNNNNNNNGG	4 cut(s)	147, 175, 191, 397
AgsI	TTSAA	2 cut(s)	662, 677
AluBI	AGCT	6 cut(s)	58, 87, 155, 242, 574, 672
AluI	AGCT	6 cut(s)	58, 87, 155, 242, 574, 672
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	284, 395
AlwI	GGATC	3 cut(s)	176, 189, 275
Ama87I	CYCGRG	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	422
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AspLEI	GCGC	1 cut(s)	617
AsuC2I	CCSGG	4 cut(s)	128, 142, 186, 332
AsuHPI	GGTGA	3 cut(s)	478, 506, 595
AvaI	CYCGRG	1 cut(s)	287
BaeI	ACNNNNGTAYC	2 cut(s)	492, 525
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	166, 703
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BcnI	CCSGG	4 cut(s)	128, 142, 186, 332
BcoDI	GTCTC	2 cut(s)	284, 395
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	4 cut(s)	128, 142, 186, 332
BmeT110I	CYCGRG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	4 cut(s)	128, 142, 186, 332
BmrI	ACTGGG	2 cut(s)	270, 328
BmuI	ACTGGG	2 cut(s)	270, 328
BpiI	GAAGAC	1 cut(s)	221
BpuMI	CCSGG	4 cut(s)	128, 142, 186, 332
BsaI	GGTCTC	2 cut(s)	284, 395
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	3 cut(s)	96, 158, 168
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 175, 191, 397
Bse1I	ACTGG	4 cut(s)	152, 265, 323, 506
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	177, 213
BseLI	CCNNNNNNNGG	4 cut(s)	147, 175, 191, 397
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	4 cut(s)	152, 265, 323, 506
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	2 cut(s)	65, 107
Bsh1285I	CGRYCG	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	7 cut(s)	97, 127, 141, 159, 169, 185, 331
BslFI	GGGAC	2 cut(s)	209, 662
BslI	CCNNNNNNNGG	4 cut(s)	147, 175, 191, 397
BsmAI	GTCTC	2 cut(s)	284, 395
BsmFI	GGGAC	2 cut(s)	209, 662
Bso31I	GGTCTC	2 cut(s)	284, 395
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	181, 267, 483
BspACI	CCGC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	390
BspFNI	CGCG	2 cut(s)	65, 107
BspHI	TCATGA	2 cut(s)	385, 448
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	3 cut(s)	176, 189, 275
BspTNI	GGTCTC	2 cut(s)	284, 395
BsrI	ACTGG	4 cut(s)	152, 265, 323, 506
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	3 cut(s)	181, 267, 483
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	177, 213
BstFNI	CGCG	2 cut(s)	65, 107
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	3 cut(s)	184, 270, 486
BstMAI	GTCTC	2 cut(s)	284, 395
BstMBI	GATC	3 cut(s)	181, 267, 483
BstMCI	CGRYCG	1 cut(s)	141
BstNSI	RCATGY	2 cut(s)	304, 463
BstSCI	CCNGG	4 cut(s)	126, 140, 184, 330
BstUI	CGCG	2 cut(s)	65, 107
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	177, 213
BtsIMutI	CAGTG	1 cut(s)	463
CciI	TCATGA	2 cut(s)	385, 448
CfoI	GCGC	1 cut(s)	617
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	5 cut(s)	76, 103, 145, 509, 684
CviJI	RGCY	9 cut(s)	58, 87, 155, 242, 522, 528, 534, 574, 672
CviKI_1	RGCY	9 cut(s)	58, 87, 155, 242, 522, 528, 534, 574, 672
CviQI	GTAC	5 cut(s)	76, 103, 145, 509, 684
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	3 cut(s)	183, 269, 485
DpnII	GATC	3 cut(s)	181, 267, 483
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	2 cut(s)	284, 395
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	3 cut(s)	67, 554, 600
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	309
FaqI	GGGAC	2 cut(s)	209, 662
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	184, 220
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	423
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	1 cut(s)	423
HapII	CCGG	7 cut(s)	97, 127, 141, 159, 169, 185, 331
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	617
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	2 cut(s)	596, 655
HpaI	GTTAAC	1 cut(s)	429
HpaII	CCGG	7 cut(s)	97, 127, 141, 159, 169, 185, 331
HphI	GGTGA	3 cut(s)	478, 506, 595
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	4 cut(s)	39, 119, 234, 580
Hpy188III	TCNNGA	5 cut(s)	92, 289, 386, 449, 659
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	2 cut(s)	136, 139
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	4 cut(s)	4, 274, 417, 463
HpyF3I	CTNAG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	615
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	181, 267, 483
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	92, 476
MalI	GATC	3 cut(s)	183, 269, 485
MboI	GATC	3 cut(s)	181, 267, 483
MboII	GAAGA	5 cut(s)	56, 73, 226, 593, 674
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	2 cut(s)	252, 550
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	2 cut(s)	378, 464
Mph1103I	ATGCAT	1 cut(s)	276
MseI	TTAA	2 cut(s)	255, 428
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	7 cut(s)	97, 127, 141, 159, 169, 185, 331
MspR9I	CCNGG	4 cut(s)	128, 142, 186, 332
MvnI	CGCG	2 cut(s)	65, 107
NciI	CCSGG	4 cut(s)	128, 142, 186, 332
NdeII	GATC	3 cut(s)	181, 267, 483
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	2 cut(s)	304, 463
PaeR7I	CTCGAG	1 cut(s)	287
PagI	TCATGA	2 cut(s)	385, 448
PfeI	GAWTC	1 cut(s)	655
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	183
PsrI	GAACNNNNNNTAC	2 cut(s)	59, 91
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	5 cut(s)	77, 104, 146, 510, 685
RsaNI	GTAC	5 cut(s)	76, 103, 145, 509, 684
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	255, 428
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	181, 267, 483
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	4 cut(s)	128, 142, 186, 332
SduI	GDGCHC	1 cut(s)	244
Sfr274I	CTCGAG	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	252, 550
SsiI	CCGC	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	4 cut(s)	126, 140, 184, 330
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	252, 550
TfiI	GAWTC	1 cut(s)	655
Tru1I	TTAA	2 cut(s)	255, 428
Tru9I	TTAA	2 cut(s)	255, 428
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	4 cut(s)	57, 374, 386, 668
TspRI	CASTG	1 cut(s)	470
XceI	RCATGY	2 cut(s)	304, 463
XhoI	CTCGAG	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.