Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Forward (+)

20161790 .. 20165602

Gene Structure 3813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGTCTGAGGGACATTGGAGCCACACTGCCTCCTGGGTTTCGATTCTATCCAAGTGATGAGGAGTTGGTCTGCCACTATCTCTACAAAAAGGTCACAGATGAGGAAGCTTTGAAGGGTACTCTGGTCGAAATTGACTTGCATACTTGTGAGCCATGGCAGCTTCCTGAGGTGGCAAAGCTGAACGCGAACGAGTGGTACTTCTTCAGCTTTCGTGACCGGAAGTACGCGACCGGGTTCAGAACCAACCGGGCGACGACGACCGGGTACTGGAAAGCTACCGGAAAAGACCGGTTGGTGGTGGATCCGGGAACAGGGGACATCGTAGGGATGAGGAAGACTCTGGTGTTCTATCGGAACAGAGCTCCCAATGGAATTAAAACTGGGTGGATCATGCATGAGTTTCGCCTCGAGACCCCACACATGCCTCCCAAGGAGGACTGGGTTCTGTGCCGGGTTTTCCACAAAGGCAAAGGAGAGATGAACGGCAACATGAACCTCAGCCCCAATGACCTTATGTTGGAGATCAAAACATCATGCACTGCTACGTTAACATCTCCAACTCATCATGACCAAAACATGCACTGTGGATATAGTAACCAGATCACCTCATTTTCCACCACACCAGTACCTCACCAAAGCCATAGCCATAGCCACAATAACCAAAGCAACTCTCTGCTCAACCTCCTTCAGCTTTCTGAAGAAAAATATACCGACTCTATCACCGAAATAAGCGCAAAAAATGACGATGATTATGGATTTTTATGGGACATGAATCTGGAAGAAAATAGCTTTGAAACAGGTACTTTGGACGACATGAGATTTGAGATGGAGAACAGCATGGTTTTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

284

Amino Acids

32.65

Weight (kDa)

5.53

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 137	4.4e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	188, 230
AclWI	GGATC	3 cut(s)	299, 312, 398
AcuI	CTGAAG	3 cut(s)	190, 674, 720
AfaI	GTAC	6 cut(s)	121, 200, 227, 269, 630, 805
AfiI	CCNNNNNNNGG	4 cut(s)	270, 298, 314, 520
AgeI	ACCGGT	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	115, 797
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	8 cut(s)	110, 163, 181, 210, 278, 365, 694, 792
AluI	AGCT	8 cut(s)	110, 163, 181, 210, 278, 365, 694, 792
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	299, 312, 398
Ama87I	CYCGRG	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	160
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AsiGI	ACCGGT	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	737
AsuC2I	CCSGG	5 cut(s)	235, 251, 265, 309, 455
AsuHPI	GGTGA	3 cut(s)	598, 626, 715
AvaI	CYCGRG	1 cut(s)	410
AxyI	CCTNAGG	1 cut(s)	168
BaeI	ACNNNNGTAYC	4 cut(s)	111, 144, 612, 645
BamHI	GGATCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	823
BceAI	ACGGC	1 cut(s)	502
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	36
BcnI	CCSGG	5 cut(s)	235, 251, 265, 309, 455
BcoDI	GTCTC	1 cut(s)	407
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	6 cut(s)	36, 235, 251, 265, 309, 455
BmeT110I	CYCGRG	1 cut(s)	410
BmiI	GGNNCC	2 cut(s)	22, 306
BmrFI	CCNGG	6 cut(s)	36, 235, 251, 265, 309, 455
BmrI	ACTGGG	2 cut(s)	393, 451
BmuI	ACTGGG	2 cut(s)	393, 451
BpiI	GAAGAC	1 cut(s)	344
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
Bpu10I	CCTNAGC	1 cut(s)	500
BpuMI	CCSGG	5 cut(s)	235, 251, 265, 309, 455
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	35, 155, 432
BsaWI	WCCGGW	3 cut(s)	219, 281, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 298, 314, 520
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	4 cut(s)	275, 388, 446, 626
Bse21I	CCTNAGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	35, 155, 432
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	4 cut(s)	270, 298, 314, 520
BseMII	CTCAG	2 cut(s)	159, 514
BseNI	ACTGG	4 cut(s)	275, 388, 446, 626
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	2 cut(s)	188, 230
Bsh1285I	CGRYCG	2 cut(s)	234, 264
BshTI	ACCGGT	1 cut(s)	291
BsiEI	CGRYCG	2 cut(s)	234, 264
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	8 cut(s)	220, 234, 250, 264, 282, 292, 308, 454
BslFI	GGGAC	3 cut(s)	26, 332, 782
BslI	CCNNNNNNNGG	4 cut(s)	270, 298, 314, 520
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	3 cut(s)	26, 332, 782
Bso31I	GGTCTC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	304, 390, 525, 603
Bsp19I	CCATGG	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	160, 513
BspFNI	CGCG	2 cut(s)	188, 230
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	22, 306
BspPI	GGATC	3 cut(s)	299, 312, 398
BspTNI	GGTCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	291
BsrI	ACTGG	4 cut(s)	275, 388, 446, 626
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	35, 155, 432
BssMI	GATC	4 cut(s)	304, 390, 525, 603
BssT1I	CCWWGG	2 cut(s)	155, 432
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	587
BstDEI	CTNAG	3 cut(s)	8, 168, 500
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	2 cut(s)	188, 230
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	4 cut(s)	307, 393, 528, 606
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	4 cut(s)	304, 390, 525, 603
BstMCI	CGRYCG	2 cut(s)	234, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	2 cut(s)	427, 583
BstSCI	CCNGG	6 cut(s)	34, 233, 249, 263, 307, 453
BstUI	CGCG	2 cut(s)	188, 230
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	2 cut(s)	26, 540
BtsIMutI	CAGTG	3 cut(s)	26, 540, 583
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	1 cut(s)	737
Cfr10I	RCCGGY	1 cut(s)	291
Csp6I	GTAC	6 cut(s)	120, 199, 226, 268, 629, 804
CspAI	ACCGGT	1 cut(s)	291
CviQI	GTAC	6 cut(s)	120, 199, 226, 268, 629, 804
DdeI	CTNAG	3 cut(s)	8, 168, 500
DpnI	GATC	4 cut(s)	306, 392, 527, 605
DpnII	GATC	4 cut(s)	304, 390, 525, 603
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	155, 432
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	3 cut(s)	190, 674, 720
Eco81I	CCTNAGG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	155, 432
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	2 cut(s)	155, 432
FaqI	GGGAC	3 cut(s)	26, 332, 782
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	161
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	1 cut(s)	161
HapII	CCGG	8 cut(s)	220, 234, 250, 264, 282, 292, 308, 454
HhaI	GCGC	1 cut(s)	737
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	4 cut(s)	45, 340, 716, 775
HpaI	GTTAAC	1 cut(s)	552
HpaII	CCGG	8 cut(s)	220, 234, 250, 264, 282, 292, 308, 454
HphI	GGTGA	3 cut(s)	598, 626, 715
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	4 cut(s)	9, 242, 357, 700
Hpy188III	TCNNGA	5 cut(s)	167, 215, 412, 569, 779
Hpy8I	GTNNAC	1 cut(s)	552
Hpy99I	CGWCG	2 cut(s)	259, 262
HpyAV	CCTTC	2 cut(s)	109, 698
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	4 cut(s)	142, 397, 540, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	3 cut(s)	8, 168, 500
HpySE526I	ACGT	1 cut(s)	548
HspAI	GCGC	1 cut(s)	735
KspAI	GTTAAC	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	304, 390, 525, 603
LmnI	GCTCC	2 cut(s)	20, 370
Lsp1109I	GCAGC	1 cut(s)	172
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	3 cut(s)	94, 215, 596
MalI	GATC	4 cut(s)	306, 392, 527, 605
MboI	GATC	4 cut(s)	304, 390, 525, 603
MboII	GAAGA	4 cut(s)	196, 349, 713, 794
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	2 cut(s)	132, 375
MlyI	GAGTC	2 cut(s)	334, 710
MmeI	TCCRAC	2 cut(s)	501, 584
Mph1103I	ATGCAT	1 cut(s)	399
MseI	TTAA	2 cut(s)	378, 551
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	8 cut(s)	220, 234, 250, 264, 282, 292, 308, 454
MspR9I	CCNGG	6 cut(s)	36, 235, 251, 265, 309, 455
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	2 cut(s)	188, 230
MwoI	GCNNNNNNNGC	1 cut(s)	160
NciI	CCSGG	5 cut(s)	235, 251, 265, 309, 455
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	304, 390, 525, 603
NlaIV	GGNNCC	2 cut(s)	22, 306
NmuCI	GTSAC	2 cut(s)	94, 215
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	2 cut(s)	427, 583
PaeR7I	CTCGAG	1 cut(s)	410
PagI	TCATGA	1 cut(s)	568
PfeI	GAWTC	2 cut(s)	45, 775
PfoI	TCCNGGA	1 cut(s)	307
PinAI	ACCGGT	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	2 cut(s)	334, 710
PpsI	GAGTC	2 cut(s)	334, 710
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	22, 306
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	6 cut(s)	121, 200, 227, 269, 630, 805
RsaNI	GTAC	6 cut(s)	120, 199, 226, 268, 629, 804
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	378, 551
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	4 cut(s)	304, 390, 525, 603
SchI	GAGTC	2 cut(s)	334, 710
ScrFI	CCNGG	6 cut(s)	36, 235, 251, 265, 309, 455
SduI	GDGCHC	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	2 cut(s)	132, 375
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	6 cut(s)	34, 233, 249, 263, 307, 453
StyI	CCWWGG	2 cut(s)	155, 432
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	3 cut(s)	43, 129, 411
TasI	AATT	2 cut(s)	132, 375
TfiI	GAWTC	2 cut(s)	45, 775
Tru1I	TTAA	2 cut(s)	378, 551
Tru9I	TTAA	2 cut(s)	378, 551
TscAI	CASTG	3 cut(s)	33, 547, 590
TseFI	GTSAC	2 cut(s)	94, 215
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	2 cut(s)	94, 215
TspDTI	ATGAA	3 cut(s)	497, 509, 788
TspRI	CASTG	3 cut(s)	33, 547, 590
XceI	RCATGY	2 cut(s)	427, 583
XhoI	CTCGAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.