Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Reverse (-)

31022613 .. 31022918

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0192900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGGATATTCATCGCTTCGGAGCTTCTGGAATTGCCCAAGAAGGACAAGCGCCACCTCCTCCACGCCGTGTACCGCGTCAGCGATCTCGAGCGCACCATCAAGTTTTACACCGAGGCTCTTGGGATGAAGCTATTGCGGCATAGGGATATTCCAAAAGAGAAGTACTCGAATGCTTTCCTAGGATTCGGGCCAGAAGAAACGAACTTTGTAATGGAGCTCACTTACAATTATGGAGTAATTCCTATGATATTGGGATTGGGTTTGGTTACAAAAGAGCTTGGAGGAAAGATAACAAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

101

Amino Acids

11.71

Weight (kDa)

9.22

Isoelectric Point (pI)

21.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	20 - 67	4.2e-09	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	76, 139
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	2 cut(s)	74, 167
AluBI	AGCT	4 cut(s)	25, 133, 220, 280
AluI	AGCT	4 cut(s)	25, 133, 220, 280
Alw21I	GWGCWC	1 cut(s)	222
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	176
AspA2I	CCTAGG	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	54, 96
AspS9I	GGNCC	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	89
AvrII	CCTAGG	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	1 cut(s)	140
BlnI	CCTAGG	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	141
BmcAI	AGTACT	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	114, 181
Bse8I	GATNNNNATC	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	114, 181
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	2 cut(s)	76, 139
BspANI	GGCC	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	114, 181
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 96
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstUI	CGCG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	132
CfoI	GCGC	2 cut(s)	54, 96
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	73, 166
CviJI	RGCY	6 cut(s)	25, 119, 133, 193, 220, 280
CviKI_1	RGCY	6 cut(s)	25, 119, 133, 193, 220, 280
CviQI	GTAC	2 cut(s)	73, 166
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DraIII	CACNNNGTG	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	181
FaiI	YATR	3 cut(s)	144, 234, 248
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	2 cut(s)	53, 95
GluI	GCNGC	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	193
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	2 cut(s)	54, 96
Hin6I	GCGC	2 cut(s)	52, 94
HinP1I	GCGC	2 cut(s)	52, 94
HinfI	GANTC	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	29, 89
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HspAI	GCGC	2 cut(s)	52, 94
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	22, 217
LpnPI	CCDG	2 cut(s)	14, 207
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	3 cut(s)	32, 229, 240
MnlI	CCTC	4 cut(s)	68, 71, 109, 278
MroXI	GAANNNNTTC	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	178
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	89
PctI	GAATGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	191
RsaI	GTAC	2 cut(s)	74, 167
RsaNI	GTAC	2 cut(s)	73, 166
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	191
ScaI	AGTACT	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	5 cut(s)	27, 60, 135, 222, 282
Sfr274I	CTCGAG	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	32, 229, 240
SsiI	CCGC	2 cut(s)	76, 139
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	181
TaqI	TCGA	2 cut(s)	90, 170
TasI	AATT	3 cut(s)	32, 229, 240
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	89
XmaJI	CCTAGG	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.