Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Forward (+)

50114241 .. 50114624

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG316100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAACGACAACATGAACCTCAGCCCTCATGACCTTATGTTGGAGACCAAAACATCATGCCCTGCTGCGTTAACATCTCCTCCAACTCATCATGACCAAAACATGCACTGTGGATATAGTAACCAGATCACCTCATTTTCCACCACACCAGTACCTCACCAAAGCCATAGCCATAGCCATAGCCACAATAACCAAAGCAATTCTCTGCTCAACCTCCTTCAGCTTTCTGAAGAAAAATATACCGACTCTATCACCGAAATAAGCGCAAAAAATGACGATGATTATGGATTTTTATGGGACATGAATCTTGAAGAAAATAGCTTTGAAACAGGTACTTTGGACGACATGAGATTTGAGATGGAGAACAGCATGGTTTTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

127

Amino Acids

14.43

Weight (kDa)

4.56

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	203, 249
AfaI	GTAC	2 cut(s)	153, 334
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	311, 326
AluBI	AGCT	2 cut(s)	223, 321
AluI	AGCT	2 cut(s)	223, 321
Alw26I	GTCTC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspLEI	GCGC	1 cut(s)	266
AsuHPI	GGTGA	3 cut(s)	121, 149, 244
BaeI	ACNNNNGTAYC	2 cut(s)	135, 168
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	33
BspHI	TCATGA	2 cut(s)	28, 91
BspTNI	GGTCTC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	106
CciI	TCATGA	2 cut(s)	28, 91
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	152, 333
CviAII	CATG	8 cut(s)	13, 29, 57, 92, 103, 301, 346, 370
CviJI	RGCY	7 cut(s)	24, 165, 171, 177, 183, 223, 321
CviKI_1	RGCY	7 cut(s)	24, 165, 171, 177, 183, 223, 321
CviQI	GTAC	2 cut(s)	152, 333
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	38
Eco57I	CTGAAG	2 cut(s)	203, 249
FaeI	CATG	8 cut(s)	16, 32, 60, 95, 106, 304, 349, 373
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	8 cut(s)	12, 28, 56, 91, 102, 300, 345, 369
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	8 cut(s)	16, 32, 60, 95, 106, 304, 349, 373
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	245, 304
HpaI	GTTAAC	1 cut(s)	72
HphI	GGTGA	3 cut(s)	121, 149, 244
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	3 cut(s)	29, 92, 308
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	8 cut(s)	16, 32, 60, 95, 106, 304, 349, 373
HspAI	GCGC	1 cut(s)	264
KspAI	GTTAAC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	4 cut(s)	75, 137, 162, 315
Lsp1109I	GCAGC	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	242, 323
MluCI	AATT	1 cut(s)	199
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	21, 107
MnlI	CCTC	6 cut(s)	29, 36, 90, 142, 165, 224
MseI	TTAA	1 cut(s)	71
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	8 cut(s)	16, 32, 60, 95, 106, 304, 349, 373
NspI	RCATGY	1 cut(s)	106
PagI	TCATGA	2 cut(s)	28, 91
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
RsaI	GTAC	2 cut(s)	153, 334
RsaNI	GTAC	2 cut(s)	152, 333
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	239
SetI	ASST	8 cut(s)	21, 36, 134, 157, 216, 225, 323, 334
Sse9I	AATT	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	110
TasI	AATT	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	113
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	17, 29, 317
TspRI	CASTG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.