Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG302200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGTCTGAGGGACATTGGAGCTACACTGCCTCCTGGGTTTCGATTCTATCCAAGTGATGAGGAGTTGGTCTGCCACTATCTCTACAAAAAGGTCACAAATGAGGAAGCTTTGAAGGGTACTCTGGTCGAAATTGACTTGCATACTTGTGAGCCATGGCAGCTTCCTGAGGTGGCAAAGCTGAACGCGAACGAGTGGTACTTCTTCAGCTTTCGTGACCGGAAGTACGCGACCGGGTTCAGAACCAACCGGGCGACGACGACCGGGTACTGGAAAGCTACCGGAAAAGACCGGATGGTGGTGGATCCGGGAACAGGGGACATCGTAGGGATGAGGAAGACGCTGGTGTTCTATCGGAACAGAGCTCCCAATGGAATTAAAACTGGGTGGATCATGCATGAGTTTCGCCTCGAGACCCCACACATGCCTCCCAAGGAGGACTGGGTTCTGTGCCGGGTTTTCCACAAAGGCAAAGGAGAGATGAACGACAACATGAACCTCAGCCCTCATGACCTTATGTTGGAGACCAAAACATCATGCACCGCTGCGTTAACATCTCCTCCAACTCATCATGACCAAACCATGCACTGTGGATATAGTAACCAGATCACCTCATTTTCCACCACGCCAGTACCTCACCAAAGCCATAGCCATAGCCACAATAACCAAAGCAATTCTTTGCTCAACCTCCTTCAGCTTTCTGAAGAAAAATATACCGACTCTATCACCGAAATAAGCGCAAAAAATGACGATGATTATGGATTTTTATGGGACATGAATCTTGAAGAAAATAGCTTTGAAACAGGTACTTTGGACGACATGAGATTTGAGATGGAGAACAGCATGGTTTTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

285

Amino Acids

32.79

Weight (kDa)

5.6

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 137	1.9e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	188, 230
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	3 cut(s)	299, 312, 398
AcuI	CTGAAG	3 cut(s)	190, 677, 723
AfaI	GTAC	6 cut(s)	121, 200, 227, 269, 633, 808
AfiI	CCNNNNNNNGG	4 cut(s)	270, 298, 314, 520
AgsI	TTSAA	3 cut(s)	115, 785, 800
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	9 cut(s)	23, 110, 163, 181, 210, 278, 365, 697, 795
AluI	AGCT	9 cut(s)	23, 110, 163, 181, 210, 278, 365, 697, 795
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	407, 518
AlwI	GGATC	3 cut(s)	299, 312, 398
Ama87I	CYCGRG	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	160, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
AspLEI	GCGC	1 cut(s)	740
AsuC2I	CCSGG	5 cut(s)	235, 251, 265, 309, 455
AsuHPI	GGTGA	3 cut(s)	601, 629, 718
AvaI	CYCGRG	1 cut(s)	410
AxyI	CCTNAGG	1 cut(s)	168
BaeI	ACNNNNGTAYC	4 cut(s)	111, 144, 615, 648
BamHI	GGATCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	172, 532
BccI	CCATC	2 cut(s)	289, 826
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	36
BcnI	CCSGG	5 cut(s)	235, 251, 265, 309, 455
BcoDI	GTCTC	2 cut(s)	407, 518
BisI	GCNGC	2 cut(s)	161, 546
BlsI	GCNGC	2 cut(s)	162, 547
Bme1390I	CCNGG	6 cut(s)	36, 235, 251, 265, 309, 455
BmeT110I	CYCGRG	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	6 cut(s)	36, 235, 251, 265, 309, 455
BmrI	ACTGGG	2 cut(s)	393, 451
BmuI	ACTGGG	2 cut(s)	393, 451
BpiI	GAAGAC	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	500
BpuMI	CCSGG	5 cut(s)	235, 251, 265, 309, 455
BsaI	GGTCTC	2 cut(s)	407, 518
BsaJI	CCNNGG	3 cut(s)	35, 155, 432
BsaWI	WCCGGW	3 cut(s)	219, 281, 291
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 544, 574
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 298, 314, 520
Bse1I	ACTGG	4 cut(s)	275, 388, 446, 629
Bse21I	CCTNAGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	35, 155, 432
BseGI	GGATG	2 cut(s)	300, 336
BseLI	CCNNNNNNNGG	4 cut(s)	270, 298, 314, 520
BseMII	CTCAG	2 cut(s)	159, 514
BseNI	ACTGG	4 cut(s)	275, 388, 446, 629
BseRI	GAGGAG	2 cut(s)	77, 549
BseXI	GCAGC	2 cut(s)	172, 532
Bsh1236I	CGCG	2 cut(s)	188, 230
Bsh1285I	CGRYCG	2 cut(s)	234, 264
BsiEI	CGRYCG	2 cut(s)	234, 264
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	8 cut(s)	220, 234, 250, 264, 282, 292, 308, 454
BslFI	GGGAC	3 cut(s)	26, 332, 785
BslI	CCNNNNNNNGG	4 cut(s)	270, 298, 314, 520
BsmAI	GTCTC	2 cut(s)	407, 518
BsmFI	GGGAC	3 cut(s)	26, 332, 785
Bso31I	GGTCTC	2 cut(s)	407, 518
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	304, 390, 606
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	1 cut(s)	543
BspCNI	CTCAG	2 cut(s)	160, 513
BspFNI	CGCG	2 cut(s)	188, 230
BspHI	TCATGA	2 cut(s)	508, 571
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	299, 312, 398
BspTNI	GGTCTC	2 cut(s)	407, 518
BsrI	ACTGG	4 cut(s)	275, 388, 446, 629
BssECI	CCNNGG	3 cut(s)	35, 155, 432
BssMI	GATC	3 cut(s)	304, 390, 606
BssT1I	CCWWGG	2 cut(s)	155, 432
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	590
BstDEI	CTNAG	3 cut(s)	8, 168, 500
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	300, 336
BstFNI	CGCG	2 cut(s)	188, 230
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	3 cut(s)	307, 393, 609
BstMAI	GTCTC	2 cut(s)	407, 518
BstMBI	GATC	3 cut(s)	304, 390, 606
BstMCI	CGRYCG	2 cut(s)	234, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	6 cut(s)	34, 233, 249, 263, 307, 453
BstUI	CGCG	2 cut(s)	188, 230
BstV1I	GCAGC	2 cut(s)	172, 532
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	300, 336
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	26, 586
CciI	TCATGA	2 cut(s)	508, 571
CfoI	GCGC	1 cut(s)	740
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	6 cut(s)	120, 199, 226, 268, 632, 807
CviQI	GTAC	6 cut(s)	120, 199, 226, 268, 632, 807
DdeI	CTNAG	3 cut(s)	8, 168, 500
DpnI	GATC	3 cut(s)	306, 392, 608
DpnII	GATC	3 cut(s)	304, 390, 606
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	155, 432
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	2 cut(s)	407, 518
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	3 cut(s)	190, 677, 723
Eco81I	CCTNAGG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	155, 432
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	2 cut(s)	155, 432
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FaqI	GGGAC	3 cut(s)	26, 332, 785
Fnu4HI	GCNGC	2 cut(s)	161, 546
FokI	GGATG	2 cut(s)	307, 343
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	2 cut(s)	161, 546
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	2 cut(s)	161, 546
HapII	CCGG	8 cut(s)	220, 234, 250, 264, 282, 292, 308, 454
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	740
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	3 cut(s)	45, 719, 778
HpaI	GTTAAC	1 cut(s)	552
HpaII	CCGG	8 cut(s)	220, 234, 250, 264, 282, 292, 308, 454
HphI	GGTGA	3 cut(s)	601, 629, 718
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	4 cut(s)	9, 242, 357, 703
Hpy188III	TCNNGA	6 cut(s)	167, 215, 412, 509, 572, 782
Hpy8I	GTNNAC	1 cut(s)	552
Hpy99I	CGWCG	2 cut(s)	259, 262
HpyAV	CCTTC	2 cut(s)	109, 701
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4V	TGCA	4 cut(s)	142, 397, 540, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	3 cut(s)	8, 168, 500
HspAI	GCGC	1 cut(s)	738
KspAI	GTTAAC	1 cut(s)	552
Kzo9I	GATC	3 cut(s)	304, 390, 606
LmnI	GCTCC	2 cut(s)	20, 370
Lsp1109I	GCAGC	2 cut(s)	172, 532
MaeIII	GTNAC	3 cut(s)	94, 215, 599
MalI	GATC	3 cut(s)	306, 392, 608
MboI	GATC	3 cut(s)	304, 390, 606
MboII	GAAGA	4 cut(s)	196, 349, 716, 797
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	3 cut(s)	132, 375, 673
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	2 cut(s)	501, 587
Mph1103I	ATGCAT	1 cut(s)	399
MseI	TTAA	2 cut(s)	378, 551
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	8 cut(s)	220, 234, 250, 264, 282, 292, 308, 454
MspR9I	CCNGG	6 cut(s)	36, 235, 251, 265, 309, 455
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	2 cut(s)	188, 230
MwoI	GCNNNNNNNGC	1 cut(s)	160
NciI	CCSGG	5 cut(s)	235, 251, 265, 309, 455
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	3 cut(s)	304, 390, 606
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	2 cut(s)	94, 215
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	410
PagI	TCATGA	2 cut(s)	508, 571
PfeI	GAWTC	2 cut(s)	45, 778
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	162, 547
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	306
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	6 cut(s)	121, 200, 227, 269, 633, 808
RsaNI	GTAC	6 cut(s)	120, 199, 226, 268, 632, 807
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	378, 551
SatI	GCNGC	2 cut(s)	161, 546
Sau3AI	GATC	3 cut(s)	304, 390, 606
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	6 cut(s)	36, 235, 251, 265, 309, 455
SduI	GDGCHC	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	132, 375, 673
SsiI	CCGC	1 cut(s)	543
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	6 cut(s)	34, 233, 249, 263, 307, 453
StyI	CCWWGG	2 cut(s)	155, 432
TaaI	ACNGT	1 cut(s)	590
TaqI	TCGA	3 cut(s)	43, 129, 411
TasI	AATT	3 cut(s)	132, 375, 673
TfiI	GAWTC	2 cut(s)	45, 778
Tru1I	TTAA	2 cut(s)	378, 551
Tru9I	TTAA	2 cut(s)	378, 551
TscAI	CASTG	2 cut(s)	33, 593
TseFI	GTSAC	2 cut(s)	94, 215
TseI	GCWGC	2 cut(s)	160, 545
Tsp45I	GTSAC	2 cut(s)	94, 215
TspDTI	ATGAA	3 cut(s)	497, 509, 791
TspRI	CASTG	2 cut(s)	33, 593
XceI	RCATGY	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.