AT4G28720

monooxygenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14192569 .. 14194302
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28720.1

Sequence Viewer

Length: 1281 bp
ATGGAGAATATGTTTCGTTTGATGGATCAAGATCAGGATTTAACTAATAACCGGTGCATTTGGGTCAACGGACCGGTCATCGTCGGAGCTGGACCGTCGGGGTTAGCGACGGCGGCTTGTCTCCATGAACAAAACGTTCCTTTCGTTGTTCTCGAGAGAGCAGATTGTATTGCTTCTCTATGGCAAAAACGTACTTACGATCGTCTCAAGCTTCACCTTCCTAAGCAGTTTTGTCAATTACCGAAAATGCCCTTCCCTGAGGACTTCCCGGAGTACCCGACGAAGCGTCAGTTCATCGACTACCTTGAGTCTTACGCTACCCGGTTCGAGATCAACCCTAAGTTCAACGAGTGTGTGCAGACTGCTCGGTTCGATGAGACCAGTGGCTTGTGGCGAGTCAAGACCGTGTCGAAGAGTGAGTCGACTCAGACCGAGGTCGAGTATATTTGCCGGTGGCTTGTGGTGGCTACGGGAGAAAATGCGGAGAGAGTGATGCCGGAGATTGATGGTCTTTCTGAGTTTTCCGGTGAGGTGATTCACGCTTGTGATTACAAGTCCGGCGAGAAATTCGCCGGGAAAAAAGTTCTCGTCGTTGGTTGTGGAAACTCCGGCATGGAAGTTTCTCTTGACCTAGCAAACCATTTCGCTAAGCCTTCCATGGTCGTGAGAAGCTCTCTTCACGTGATGCCGAGGGAAGTAATGGGTAAATCAACGTTTGAGCTTGCAATGAAGATGTTAAGATGGTTTCCTCTATGGTTAGTCGACAAGATATTGTTGGTTTTAAGTTGGATGGTTCTTGGAAACATCGAGAAATACGGTTTGAAACGACCAGAGATGGGTCCAATGGAGCTAAAAAGCGTGAAAGGCAAGACACCGGTGCTTGACATCGGAGCTATAGAGAAGATCCGGTTAGGAAAGATCAACGTGGTTCCAGGGATCAAAAGGTTTAACGGAAACAAAGTCGAACTTGTCAATGGAGAACAACTAGACGTAGACTCAGTTGTTCTAGCTACTGGTTACCGCAGCAACGTCCCATATTGGCTACAAGAGAATGAGTTCTTTGCAAAGAATGGTTTCCCAAAGACAGTAGCTGACAACAATGGTTGGAAAGGAAGGACAGGATTGTATGCGGTTGGGTTTACGAGGAAAGGGCTCTCAGGTGCGTCAATGGACGCGGTTAAGATCGCACAAGACATAGGCTCTGTTTGGCAACTTGAAACAAAACAACCCACGAAACGCTCAAGGGGTTCTCTTCGAAGGTGTATCTCTCAACAGTTCTAA

Protein Analysis

426

Amino Acids

48.11

Weight (kDa)

8.89

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_3 PF13738 26 - 225 2.5e-21 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2 PF07992 26 - 244 7.1e-11 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 27 - 347 1.4e-31 Flavin-binding monooxygenase-like
Lys_Orn_oxgnase PF13434 91 - 220 2.1e-13 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 422, 762, 993
AccII CGCG 1 cut(s) 1175
AciI CCGC 5 cut(s) 113, 482, 1021, 1130, 1175
AclI AACGTT 2 cut(s) 135, 713
AclWI GGATC 3 cut(s) 33, 898, 944
AcsI RAATTY 1 cut(s) 566
AcvI CACGTG 1 cut(s) 682
AfaI GTAC 2 cut(s) 193, 275
AfiI CCNNNNNNNGG 1 cut(s) 836
AgeI ACCGGT 3 cut(s) 51, 73, 874
AgsI TTSAA 3 cut(s) 346, 823, 1217
AhdI GACNNNNNGTC 1 cut(s) 285
AjnI CCWGG 1 cut(s) 931
AleI CACNNNNGTG 1 cut(s) 543
AluBI AGCT 8 cut(s) 89, 211, 672, 721, 850, 893, 1010, 1091
AluI AGCT 8 cut(s) 89, 211, 672, 721, 850, 893, 1010, 1091
Alw26I GTCTC 3 cut(s) 125, 209, 371
AlwI GGATC 3 cut(s) 33, 898, 944
AlwNI CAGNNNCTG 1 cut(s) 1091
Ama87I CYCGRG 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 1023
ApoI RAATTY 1 cut(s) 566
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
AsiGI ACCGGT 3 cut(s) 51, 73, 874
Asp700I GAANNNNTTC 2 cut(s) 1055, 1073
AspS9I GGNCC 3 cut(s) 71, 92, 839
AsuC2I CCSGG 3 cut(s) 269, 322, 574
AsuHPI GGTGA 3 cut(s) 206, 539, 544
AsuII TTCGAA 1 cut(s) 1255
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 3 cut(s) 71, 92, 839
AxyI CCTNAGG 1 cut(s) 258
BanII GRGCYC 1 cut(s) 1155
BbrPI CACGTG 1 cut(s) 682
BbvI GCAGC 1 cut(s) 1035
BccI CCATC 5 cut(s) 16, 500, 735, 784, 829
BceAI ACGGC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 1 cut(s) 933
BcnI CCSGG 3 cut(s) 269, 322, 574
BcoDI GTCTC 3 cut(s) 125, 209, 371
BfaI CTAG 3 cut(s) 632, 986, 1007
BfmI CTRYAG 1 cut(s) 894
BisI GCNGC 2 cut(s) 114, 1024
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 2 cut(s) 115, 1025
Bme1390I CCNGG 4 cut(s) 269, 322, 574, 933
Bme18I GGWCC 3 cut(s) 71, 92, 839
BmeRI GACNNNNNGTC 1 cut(s) 285
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 71, 92, 839
BmiI GGNNCC 2 cut(s) 840, 930
BmrFI CCNGG 4 cut(s) 269, 322, 574, 933
BmsI GCATC 2 cut(s) 483, 675
BoxI GACNNNNGTC 1 cut(s) 434
BplI GAGNNNNNCTC 2 cut(s) 658, 690
Bpu10I CCTNAGC 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 648
Bpu14I TTCGAA 1 cut(s) 1255
BpuEI CTTGAG 3 cut(s) 191, 326, 1225
BpuMI CCSGG 3 cut(s) 269, 322, 574
BsaAI YACGTR 1 cut(s) 682
BsaBI GATNNNNATC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 4 cut(s) 432, 657, 689, 932
BsaWI WCCGGW 5 cut(s) 51, 73, 524, 874, 906
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 836
Bse118I RCCGGY 4 cut(s) 51, 73, 450, 874
Bse1I ACTGG 2 cut(s) 381, 1018
Bse21I CCTNAGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 732
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 933
BseDI CCNNGG 4 cut(s) 432, 657, 689, 932
BseGI GGATG 1 cut(s) 795
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 836
BseMI GCAATG 1 cut(s) 732
BseMII CTCAG 5 cut(s) 249, 440, 507, 1011, 1170
BseNI ACTGG 2 cut(s) 381, 1018
BseXI GCAGC 1 cut(s) 1035
BsgI GTGCAG 1 cut(s) 377
Bsh1236I CGCG 1 cut(s) 1175
Bsh1285I CGRYCG 1 cut(s) 202
BshTI ACCGGT 3 cut(s) 51, 73, 874
BsiEI CGRYCG 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 1 cut(s) 836
BsmAI GTCTC 3 cut(s) 125, 209, 371
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 1016
Bso31I GGTCTC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 1255
Bsp1286I GDGCHC 1 cut(s) 1155
Bsp143I GATC 8 cut(s) 25, 31, 199, 330, 903, 918, 936, 1182
Bsp1720I GCTNAGC 1 cut(s) 648
Bsp19I CCATGG 1 cut(s) 657
BspACI CCGC 5 cut(s) 113, 482, 1021, 1130, 1175
BspCNI CTCAG 5 cut(s) 250, 439, 508, 1010, 1169
BspFNI CGCG 1 cut(s) 1175
BspLI GGNNCC 2 cut(s) 840, 930
BspPI GGATC 3 cut(s) 33, 898, 944
BspT104I TTCGAA 1 cut(s) 1255
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 732
BsrFI RCCGGY 4 cut(s) 51, 73, 450, 874
BsrI ACTGG 2 cut(s) 381, 1018
BssAI RCCGGY 4 cut(s) 51, 73, 450, 874
BssECI CCNNGG 4 cut(s) 432, 657, 689, 932
BssMI GATC 8 cut(s) 25, 31, 199, 330, 903, 918, 936, 1182
BssT1I CCWWGG 1 cut(s) 657
Bst2UI CCWGG 1 cut(s) 933
Bst4CI ACNGT 5 cut(s) 96, 406, 818, 1087, 1275
Bst6I CTCTTC 3 cut(s) 407, 681, 1257
BstBAI YACGTR 1 cut(s) 682
BstBI TTCGAA 1 cut(s) 1255
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 8 cut(s) 222, 258, 339, 426, 516, 648, 997, 1156
BstDSI CCRYGG 1 cut(s) 657
BstEII GGTNACC 1 cut(s) 1016
BstF5I GGATG 1 cut(s) 795
BstFNI CGCG 1 cut(s) 1175
BstKTI GATC 8 cut(s) 28, 34, 202, 333, 906, 921, 939, 1185
BstMAI GTCTC 3 cut(s) 125, 209, 371
BstMBI GATC 8 cut(s) 25, 31, 199, 330, 903, 918, 936, 1182
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 113, 864
BstNI CCWGG 1 cut(s) 933
BstPAI GACNNNNGTC 1 cut(s) 434
BstPI GGTNACC 1 cut(s) 1016
BstSCI CCNGG 4 cut(s) 267, 320, 572, 931
BstSFI CTRYAG 1 cut(s) 894
BstUI CGCG 1 cut(s) 1175
BstV1I GCAGC 1 cut(s) 1035
BstX2I RGATCY 1 cut(s) 903
BstYI RGATCY 1 cut(s) 903
Bsu36I CCTNAGG 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 657
BtsCI GGATG 1 cut(s) 795
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 723
CaiI CAGNNNCTG 1 cut(s) 1091
Cfr10I RCCGGY 4 cut(s) 51, 73, 450, 874
Cfr13I GGNCC 3 cut(s) 71, 92, 839
CpoI CGGWCCG 1 cut(s) 71
CseI GACGC 3 cut(s) 275, 1152, 1181
Csp6I GTAC 2 cut(s) 192, 274
CspAI ACCGGT 3 cut(s) 51, 73, 874
CspI CGGWCCG 1 cut(s) 71
CviAII CATG 3 cut(s) 125, 613, 658
CviQI GTAC 2 cut(s) 192, 274
DdeI CTNAG 8 cut(s) 222, 258, 339, 426, 516, 648, 997, 1156
DpnI GATC 8 cut(s) 27, 33, 201, 332, 905, 920, 938, 1184
DpnII GATC 8 cut(s) 25, 31, 199, 330, 903, 918, 936, 1182
DriI GACNNNNNGTC 1 cut(s) 285
Eam1104I CTCTTC 3 cut(s) 407, 681, 1257
Eam1105I GACNNNNNGTC 1 cut(s) 285
EarI CTCTTC 3 cut(s) 407, 681, 1257
Eco130I CCWWGG 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 1155
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 3 cut(s) 71, 92, 839
Eco72I CACGTG 1 cut(s) 682
Eco81I CCTNAGG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 1016
EcoO65I GGTNACC 1 cut(s) 1016
EcoRII CCWGG 1 cut(s) 931
EcoT14I CCWWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 1155
ErhI CCWWGG 1 cut(s) 657
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 3 cut(s) 128, 616, 661
FalI AAGNNNNNCTT 4 cut(s) 609, 641, 951, 983
FaqI GGGAC 1 cut(s) 1016
FatI CATG 3 cut(s) 124, 612, 657
FblI GTMKAC 3 cut(s) 422, 762, 993
Fnu4HI GCNGC 2 cut(s) 114, 1024
FokI GGATG 1 cut(s) 802
FriOI GRGCYC 1 cut(s) 1155
Fsp4HI GCNGC 2 cut(s) 114, 1024
FspBI CTAG 3 cut(s) 632, 986, 1007
GluI GCNGC 2 cut(s) 114, 1024
HgaI GACGC 3 cut(s) 275, 1152, 1181
Hin1II CATG 3 cut(s) 128, 616, 661
HincII GTYRAC 3 cut(s) 67, 423, 763
HindII GTYRAC 3 cut(s) 67, 423, 763
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 6 cut(s) 308, 396, 419, 424, 535, 995
HphI GGTGA 3 cut(s) 206, 539, 544
Hpy166II GTNNAC 5 cut(s) 67, 423, 763, 994, 1140
Hpy188I TCNGA 4 cut(s) 86, 429, 517, 890
Hpy188III TCNNGA 9 cut(s) 29, 35, 152, 154, 328, 400, 626, 664, 808
Hpy8I GTNNAC 5 cut(s) 67, 423, 763, 994, 1140
Hpy99I CGWCG 5 cut(s) 86, 100, 112, 283, 593
HpyAV CCTTC 5 cut(s) 227, 262, 663, 1107, 1251
HpyCH4III ACNGT 5 cut(s) 96, 406, 818, 1087, 1275
HpyCH4IV ACGT 7 cut(s) 135, 190, 681, 713, 924, 990, 1029
HpyCH4V TGCA 4 cut(s) 57, 358, 725, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 864
HpyF3I CTNAG 8 cut(s) 222, 258, 339, 426, 516, 648, 997, 1156
HpySE526I ACGT 7 cut(s) 135, 190, 681, 713, 924, 990, 1029
Hsp92II CATG 3 cut(s) 128, 616, 661
Kzo9I GATC 8 cut(s) 25, 31, 199, 330, 903, 918, 936, 1182
LmnI GCTCC 3 cut(s) 86, 847, 890
Lsp1109I GCAGC 1 cut(s) 1035
LweI GCATC 2 cut(s) 483, 675
MaeI CTAG 3 cut(s) 632, 986, 1007
MaeII ACGT 7 cut(s) 135, 190, 681, 713, 924, 990, 1029
MaeIII GTNAC 1 cut(s) 1016
MalI GATC 8 cut(s) 27, 33, 201, 332, 905, 920, 938, 1184
MboI GATC 8 cut(s) 25, 31, 199, 330, 903, 918, 936, 1182
MboII GAAGA 5 cut(s) 424, 668, 742, 913, 1244
MflI RGATCY 1 cut(s) 903
MhlI GDGCHC 1 cut(s) 1155
MluCI AATT 2 cut(s) 236, 566
MlyI GAGTC 5 cut(s) 317, 405, 418, 428, 989
MmeI TCCRAC 3 cut(s) 64, 767, 1085
MnlI CCTC 6 cut(s) 253, 427, 523, 684, 759, 1137
MroXI GAANNNNTTC 2 cut(s) 1055, 1073
MseI TTAA 5 cut(s) 41, 737, 782, 948, 1179
MslI CAYNNNNRTG 2 cut(s) 543, 662
MspR9I CCNGG 4 cut(s) 269, 322, 574, 933
MvaI CCWGG 1 cut(s) 933
MvnI CGCG 1 cut(s) 1175
MwoI GCNNNNNNNGC 2 cut(s) 113, 864
NciI CCSGG 3 cut(s) 269, 322, 574
NcoI CCATGG 1 cut(s) 657
NdeII GATC 8 cut(s) 25, 31, 199, 330, 903, 918, 936, 1182
NlaIII CATG 3 cut(s) 128, 616, 661
NlaIV GGNNCC 2 cut(s) 840, 930
NmeAIII GCCGAG 1 cut(s) 714
NspV TTCGAA 1 cut(s) 1255
OliI CACNNNNGTG 1 cut(s) 543
PaeR7I CTCGAG 1 cut(s) 152
PcsI WCGNNNNNNNCGW 3 cut(s) 104, 141, 150
PdmI GAANNNNTTC 2 cut(s) 1055, 1073
PfeI GAWTC 1 cut(s) 535
PflFI GACNNNGTC 1 cut(s) 406
PfoI TCCNGGA 1 cut(s) 267
PinAI ACCGGT 3 cut(s) 51, 73, 874
PkrI GCNGC 2 cut(s) 115, 1025
Ple19I CGATCG 1 cut(s) 202
PleI GAGTC 5 cut(s) 316, 404, 418, 427, 989
PmaCI CACGTG 1 cut(s) 682
PmlI CACGTG 1 cut(s) 682
PpsI GAGTC 5 cut(s) 316, 404, 418, 427, 989
Ppu21I YACGTR 1 cut(s) 682
PshAI GACNNNNGTC 1 cut(s) 434
Psp1406I AACGTT 2 cut(s) 135, 713
Psp6I CCWGG 1 cut(s) 931
PspCI CACGTG 1 cut(s) 682
PspEI GGTNACC 1 cut(s) 1016
PspGI CCWGG 1 cut(s) 931
PspN4I GGNNCC 2 cut(s) 840, 930
PspPI GGNCC 3 cut(s) 71, 92, 839
PstNI CAGNNNCTG 1 cut(s) 1091
PsuI RGATCY 1 cut(s) 903
PsyI GACNNNGTC 1 cut(s) 406
PvuI CGATCG 1 cut(s) 202
RsaI GTAC 2 cut(s) 193, 275
RsaNI GTAC 2 cut(s) 192, 274
RseI CAYNNNNRTG 2 cut(s) 543, 662
Rsr2I CGGWCCG 1 cut(s) 71
RsrII CGGWCCG 1 cut(s) 71
SalI GTCGAC 2 cut(s) 421, 761
SaqAI TTAA 5 cut(s) 41, 737, 782, 948, 1179
SatI GCNGC 2 cut(s) 114, 1024
Sau3AI GATC 8 cut(s) 25, 31, 199, 330, 903, 918, 936, 1182
Sau96I GGNCC 3 cut(s) 71, 92, 839
SchI GAGTC 5 cut(s) 317, 405, 418, 428, 989
ScrFI CCNGG 4 cut(s) 269, 322, 574, 933
SduI GDGCHC 1 cut(s) 1155
SfaNI GCATC 2 cut(s) 483, 675
SfcI CTRYAG 1 cut(s) 894
Sfr274I CTCGAG 1 cut(s) 152
SfuI TTCGAA 1 cut(s) 1255
SgrAI CRCCGGYG 1 cut(s) 874
SinI GGWCC 3 cut(s) 71, 92, 839
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 543, 662
SmlI CTYRAG 4 cut(s) 152, 206, 305, 1240
SmoI CTYRAG 4 cut(s) 152, 206, 305, 1240
Sse9I AATT 2 cut(s) 236, 566
SsiI CCGC 5 cut(s) 113, 482, 1021, 1130, 1175
SspMI CTAG 3 cut(s) 632, 986, 1007
StyD4I CCNGG 4 cut(s) 267, 320, 572, 931
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 5 cut(s) 96, 406, 818, 1087, 1275
TaiI ACGT 7 cut(s) 138, 193, 684, 716, 927, 993, 1032
TaqII GACCGA 1 cut(s) 446
TasI AATT 2 cut(s) 236, 566
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 5 cut(s) 41, 737, 782, 948, 1179
Tru9I TTAA 5 cut(s) 41, 737, 782, 948, 1179
TscAI CASTG 1 cut(s) 388
TseI GCWGC 1 cut(s) 1023
TspDTI ATGAA 3 cut(s) 141, 283, 743
TspGWI ACGGA 2 cut(s) 84, 966
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 406
VpaK11BI GGWCC 3 cut(s) 71, 92, 839
XapI RAATTY 1 cut(s) 566
XhoI CTCGAG 1 cut(s) 152
XmiI GTMKAC 3 cut(s) 422, 762, 993
XmnI GAANNNNTTC 2 cut(s) 1055, 1073
XspI CTAG 3 cut(s) 632, 986, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.