Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029085.1

Orthogroup ID

OG0010837

Physical Location & Seq

Genomic Coordinates Forward (+)

63 .. 401

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029085.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgcttcttactttaggtccagtattctcacacagaaacactgagtgcctagcctcagtatggcaaaaacgcacctatgacaggctcaagcttcatcttcccaaggcattttgccaactccctaaacttccattccctgaggacttccctgagtatccaacaaagagacaattcatcgactaccttgaatcatacgccaaacactttgaaatcaacccaaaattcaactcctccgtccaatcagcccgctacgacgagaccagcggtttctggagggtcaagacagtttcaacaaccgggtcaacccgaatgcaggtggctcatagttaccaccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009735 GO:0009741 GO:0009742 GO:0009755 GO:0009850 GO:0009851 GO:0009889 GO:0009987 GO:0010033 GO:0010600 GO:0010817 GO:0014070 GO:0016491 GO:0016705 GO:0016709 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043401 GO:0044237 GO:0044249 GO:0046885 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0090354 GO:0103075 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase

Protein Analysis

112

Amino Acids

13.2

Weight (kDa)

9.36

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04180 AT4G28720 AT5G43890
fragaria_vesca	FvH4_2g20150 FvH4_2g20150
malus_domestica	MD05G1184800.v1.1 MD10G1172800.v1.1
prunus_persica	Prupe.8G211000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153991 RchiOBHm_Chr6g0285851
rosa_laevigata	RLG00000012604
rosa_multiflora	Rmu_sc0004321.1_g000011 Rmu_sc0029085.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182640
rosa_rugosa	Rorug06G0177300
rosa_samantha	Rh6AG289200 Rh6BG291100 Rh6CG292000 Rh6DG284000
rosa_wichuraiana	Rw6G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	304
Acc36I	ACCTGC	1 cut(s)	304
AciI	CCGC	2 cut(s)	247, 264
AcsI	RAATTY	1 cut(s)	221
AdeI	CACNNNGTG	1 cut(s)	45
AfiI	CCNNNNNNNGG	3 cut(s)	60, 81, 313
AgsI	TTSAA	4 cut(s)	188, 209, 226, 291
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	160, 251
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	17
AxyI	CCTNAGG	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	160, 251
BfaI	CTAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 81, 313
Bse1I	ACTGG	2 cut(s)	20, 334
Bse21I	CCTNAGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	60, 81, 313
BseMII	CTCAG	4 cut(s)	33, 69, 129, 141
BseNI	ACTGG	2 cut(s)	20, 334
BseRI	GAGGAG	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	3 cut(s)	60, 81, 313
BsmAI	GTCTC	2 cut(s)	160, 251
BsmI	GAATGC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	251
BspACI	CCGC	2 cut(s)	247, 264
BspCNI	CTCAG	4 cut(s)	34, 68, 130, 142
BspMI	ACCTGC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	20, 334
BssECI	CCNNGG	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	4 cut(s)	42, 55, 138, 150
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	160, 251
BstSCI	CCNGG	1 cut(s)	296
Bsu36I	CCTNAGG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	17
CviJI	RGCY	5 cut(s)	53, 85, 91, 245, 320
CviKI_1	RGCY	5 cut(s)	53, 85, 91, 245, 320
DdeI	CTNAG	4 cut(s)	42, 55, 138, 150
DraIII	CACNNNGTG	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	17
Eco81I	CCTNAGG	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	4 cut(s)	61, 78, 193, 324
FauI	CCCGC	1 cut(s)	254
FspBI	CTAG	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	292
HapII	CCGG	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	297
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188III	TCNNGA	2 cut(s)	271, 280
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	313
HpyF3I	CTNAG	4 cut(s)	42, 55, 138, 150
LpnPI	CCDG	8 cut(s)	33, 67, 150, 162, 256, 274, 299, 310
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	326
MboII	GAAGA	1 cut(s)	89
MluCI	AATT	2 cut(s)	170, 221
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	4 cut(s)	64, 133, 241, 267
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	304
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	298
SetI	ASST	5 cut(s)	19, 77, 93, 186, 318
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	170, 221
SsiI	CCGC	2 cut(s)	247, 264
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	170, 221
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	83, 163
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.