Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010837

Physical Location & Seq

Genomic Coordinates Reverse (-)

27963034 .. 27964379

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0177300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCCTAAACGGCGAAAGAAAAGTGTTGAAGTGACAGTGAGGAAAAGTGTAAAGCTGATATTGGAGGAAGAGAAGGAAACCATTCTTGCAAATGAAAGAGCTTTATGGCAGCAGGAGAGAGAAAGAGTATGGAAGCAAGAGAGAGAAAGAGTGGTTGCTGAGGAGCGTGCATATTGGACGGCCAAGTTTGCAGAATTGGCGGCAAAGATTGATGGAAAGAAGCTGCCATTAGAGTCACCAAAACCTGTCACACCCCTTCAAAATCCTGGTTCAGGACAAGGGAGTTGTTCCCGACATGCTAAGAAAGTTATGCAGAATAATCTGGACGGTGAGCTCAATGCAGTGAAGAAGAGGTTGGTTTTAAATGATGATGCAACTGGACTGTTAGTTGAAGTGAACCATGAAGTTCCAGAAGGGAACCACAAAGTAACGGCAATAATCGAGGAGGAGGTTAGAGACATCATGGCTCCCAAAATTTCAGCAAATGATGATCTGGAGACGACTGCTGCGGTGCATGAGTGTGAACTGGCAGTAGATAGGGTGGACAGCATTGTTGCTATTGGAACAATTATTCTAGTGAATGTTGCATCGAGCGATCAGCTGATACATGGTGTTCTATTGGGAAAGGAAAATATGCCCGTCTCAGTTGTTCGAGCCATTGATGATGATGCCCTGTTGAAAAAAAATAGTGCTAATACCAAGAAGAGAATGAGAGATGTATTTGATGACAATGAAGACCTTGAAAACTTGCCACCAAATCTGCCAACGACATTAAAGGATTTGTGCACGTGGGGGAACAATTTCCTTAGAGACGAGGTCACCATCCACCCAACATTTGCTGCGGACCTTTTCGGCTGTTCAAAGAAAGTCTGTCTGTTTAGAAGTGATCTCTATACCATGGCCAACAAGCTAGAAGTATCAAATTGTGGCGACCCGAATGGGTATACCACAGCGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009735 GO:0009741 GO:0009742 GO:0009755 GO:0009850 GO:0009851 GO:0009889 GO:0009987 GO:0010033 GO:0010600 GO:0010817 GO:0014070 GO:0016491 GO:0016705 GO:0016709 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043401 GO:0044237 GO:0044249 GO:0046885 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0090354 GO:0103075 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase

Protein Analysis

319

Amino Acids

35.61

Weight (kDa)

5.69

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04180 AT4G28720 AT5G43890
fragaria_vesca	FvH4_2g20150 FvH4_2g20150
malus_domestica	MD05G1184800.v1.1 MD10G1172800.v1.1
prunus_persica	Prupe.8G211000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153991 RchiOBHm_Chr6g0285851
rosa_laevigata	RLG00000012604
rosa_multiflora	Rmu_sc0004321.1_g000011 Rmu_sc0029085.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182640
rosa_rugosa	Rorug06G0177300
rosa_samantha	Rh6AG289200 Rh6BG291100 Rh6CG292000 Rh6DG284000
rosa_wichuraiana	Rw6G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	944
AciI	CCGC	3 cut(s)	200, 509, 842
AcoI	YGGCCR	2 cut(s)	180, 900
AcsI	RAATTY	1 cut(s)	474
AcvI	CACGTG	1 cut(s)	789
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	6 cut(s)	29, 260, 392, 679, 743, 861
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	6 cut(s)	55, 101, 223, 334, 601, 910
AluI	AGCT	6 cut(s)	55, 101, 223, 334, 601, 910
Alw21I	GWGCWC	2 cut(s)	336, 788
Alw26I	GTCTC	4 cut(s)	450, 491, 646, 804
Alw44I	GTGCAC	1 cut(s)	784
AoxI	GGCC	2 cut(s)	180, 900
ApaLI	GTGCAC	1 cut(s)	784
ApeKI	GCWGC	4 cut(s)	109, 223, 506, 839
ApoI	RAATTY	1 cut(s)	474
Asp700I	GAANNNNTTC	2 cut(s)	81, 800
AspLEI	GCGC	1 cut(s)	955
AspS9I	GGNCC	1 cut(s)	844
AsuHPI	GGTGA	3 cut(s)	228, 341, 811
AvaII	GGWCC	1 cut(s)	844
BaeGI	GKGCMC	1 cut(s)	788
BalI	TGGCCA	1 cut(s)	902
BanII	GRGCYC	1 cut(s)	336
BbrPI	CACGTG	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	2 cut(s)	336, 788
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	4 cut(s)	121, 210, 493, 826
BccI	CCATC	2 cut(s)	206, 830
BceAI	ACGGC	4 cut(s)	26, 195, 447, 940
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	4 cut(s)	450, 491, 646, 804
BfaI	CTAG	2 cut(s)	575, 911
BfoI	RGCGCY	1 cut(s)	956
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	5 cut(s)	110, 201, 224, 507, 840
BlsI	GCNGC	5 cut(s)	111, 202, 225, 508, 841
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	844
BmgT120I	GGNCC	1 cut(s)	844
BmiI	GGNNCC	2 cut(s)	419, 468
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	3 cut(s)	361, 596, 658
BpiI	GAAGAC	1 cut(s)	741
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	789
BsaJI	CCNNGG	1 cut(s)	897
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	382, 531
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	897
BseGI	GGATG	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	150, 657
BseNI	ACTGG	2 cut(s)	382, 531
BseRI	GAGGAG	3 cut(s)	176, 458, 461
BseSI	GKGCMC	1 cut(s)	788
BseXI	GCAGC	4 cut(s)	121, 210, 493, 826
BshFI	GGCC	2 cut(s)	182, 902
BsiHKAI	GWGCWC	2 cut(s)	336, 788
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	4 cut(s)	450, 491, 646, 804
BsmBI	CGTCTC	3 cut(s)	491, 646, 804
BsnI	GGCC	2 cut(s)	182, 902
Bsp1286I	GDGCHC	2 cut(s)	336, 788
Bsp143I	GATC	3 cut(s)	490, 595, 886
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	3 cut(s)	200, 509, 842
BspANI	GGCC	2 cut(s)	182, 902
BspCNI	CTCAG	2 cut(s)	151, 656
BspLI	GGNNCC	2 cut(s)	419, 468
BsrI	ACTGG	2 cut(s)	382, 531
BssECI	CCNNGG	1 cut(s)	897
BssMI	GATC	3 cut(s)	490, 595, 886
BssNAI	GTATAC	1 cut(s)	945
BssT1I	CCWWGG	1 cut(s)	897
Bst1107I	GTATAC	1 cut(s)	945
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	37, 329, 384
Bst6I	CTCTTC	3 cut(s)	63, 344, 698
BstBAI	YACGTR	1 cut(s)	789
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	4 cut(s)	159, 300, 643, 806
BstDSI	CCRYGG	1 cut(s)	897
BstEII	GGTNACC	1 cut(s)	817
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	822
BstH2I	RGCGCY	1 cut(s)	956
BstHHI	GCGC	1 cut(s)	955
BstKTI	GATC	3 cut(s)	493, 598, 889
BstMAI	GTCTC	4 cut(s)	450, 491, 646, 804
BstMBI	GATC	3 cut(s)	490, 595, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 188, 197
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	817
BstSCI	CCNGG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	788
BstV1I	GCAGC	4 cut(s)	121, 210, 493, 826
BstV2I	GAAGAC	1 cut(s)	741
BstZ17I	GTATAC	1 cut(s)	945
BsuRI	GGCC	2 cut(s)	182, 902
BtgI	CCRYGG	1 cut(s)	897
BtsCI	GGATG	1 cut(s)	822
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	42, 348
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	955
Cfr13I	GGNCC	1 cut(s)	844
CviAII	CATG	6 cut(s)	296, 401, 463, 515, 608, 898
DdeI	CTNAG	4 cut(s)	159, 300, 643, 806
DpnI	GATC	3 cut(s)	492, 597, 888
DpnII	GATC	3 cut(s)	490, 595, 886
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	2 cut(s)	180, 900
Eam1104I	CTCTTC	3 cut(s)	63, 344, 698
EarI	CTCTTC	3 cut(s)	63, 344, 698
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	897
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	844
Eco53kI	GAGCTC	1 cut(s)	334
Eco72I	CACGTG	1 cut(s)	789
Eco91I	GGTNACC	1 cut(s)	817
EcoICRI	GAGCTC	1 cut(s)	334
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	817
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	897
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	897
Esp3I	CGTCTC	3 cut(s)	491, 646, 804
FaeI	CATG	6 cut(s)	299, 404, 466, 518, 611, 901
FatI	CATG	6 cut(s)	295, 400, 462, 514, 607, 897
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	5 cut(s)	110, 201, 224, 507, 840
FokI	GGATG	1 cut(s)	809
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	5 cut(s)	110, 201, 224, 507, 840
FspBI	CTAG	2 cut(s)	575, 911
GlaI	GCGC	1 cut(s)	954
GluI	GCNGC	5 cut(s)	110, 201, 224, 507, 840
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	956
HaeIII	GGCC	2 cut(s)	182, 902
HhaI	GCGC	1 cut(s)	955
Hin1II	CATG	6 cut(s)	299, 404, 466, 518, 611, 901
Hin6I	GCGC	1 cut(s)	953
HinP1I	GCGC	1 cut(s)	953
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	3 cut(s)	228, 341, 811
Hpy166II	GTNNAC	5 cut(s)	397, 524, 544, 786, 945
Hpy188III	TCNNGA	5 cut(s)	273, 291, 323, 410, 494
Hpy8I	GTNNAC	5 cut(s)	397, 524, 544, 786, 945
HpyAV	CCTTC	3 cut(s)	67, 266, 407
HpyCH4III	ACNGT	3 cut(s)	37, 329, 384
HpyCH4IV	ACGT	1 cut(s)	788
HpyCH4V	TGCA	9 cut(s)	89, 170, 191, 313, 341, 374, 514, 587, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 188, 197
HpyF3I	CTNAG	4 cut(s)	159, 300, 643, 806
HpySE526I	ACGT	1 cut(s)	788
Hsp92II	CATG	6 cut(s)	299, 404, 466, 518, 611, 901
HspAI	GCGC	1 cut(s)	953
Kzo9I	GATC	3 cut(s)	490, 595, 886
LmnI	GCTCC	2 cut(s)	163, 472
Lsp1109I	GCAGC	4 cut(s)	121, 210, 493, 826
LweI	GCATC	3 cut(s)	361, 596, 658
MaeI	CTAG	2 cut(s)	575, 911
MaeII	ACGT	1 cut(s)	788
MaeIII	GTNAC	5 cut(s)	31, 234, 247, 427, 817
MalI	GATC	3 cut(s)	492, 597, 888
MboI	GATC	3 cut(s)	490, 595, 886
MboII	GAAGA	5 cut(s)	80, 358, 361, 715, 746
MhlI	GDGCHC	2 cut(s)	336, 788
MlsI	TGGCCA	1 cut(s)	902
MluCI	AATT	5 cut(s)	194, 474, 567, 799, 922
MluNI	TGGCCA	1 cut(s)	902
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	8 cut(s)	33, 58, 154, 345, 436, 439, 442, 808
Mox20I	TGGCCA	1 cut(s)	902
MroXI	GAANNNNTTC	2 cut(s)	81, 800
MscI	TGGCCA	1 cut(s)	902
MseI	TTAA	2 cut(s)	362, 773
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	902
MspA1I	CMGCKG	1 cut(s)	601
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	3 cut(s)	10, 188, 197
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	3 cut(s)	490, 595, 886
NlaIII	CATG	6 cut(s)	299, 404, 466, 518, 611, 901
NlaIV	GGNNCC	2 cut(s)	419, 468
NmuCI	GTSAC	4 cut(s)	31, 234, 247, 817
NspI	RCATGY	1 cut(s)	299
PdmI	GAANNNNTTC	2 cut(s)	81, 800
PflFI	GACNNNGTC	1 cut(s)	815
PkrI	GCNGC	5 cut(s)	111, 202, 225, 508, 841
PleI	GAGTC	1 cut(s)	241
PmaCI	CACGTG	1 cut(s)	789
PmlI	CACGTG	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	789
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	789
PspEI	GGTNACC	1 cut(s)	817
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	419, 468
PspPI	GGNCC	1 cut(s)	844
PsyI	GACNNNGTC	1 cut(s)	815
PvuII	CAGCTG	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	519
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	362, 773
SatI	GCNGC	5 cut(s)	110, 201, 224, 507, 840
Sau3AI	GATC	3 cut(s)	490, 595, 886
Sau96I	GGNCC	1 cut(s)	844
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	2 cut(s)	336, 788
SfaNI	GCATC	3 cut(s)	361, 596, 658
SinI	GGWCC	1 cut(s)	844
SmiMI	CAYNNNNRTG	1 cut(s)	519
Sse9I	AATT	5 cut(s)	194, 474, 567, 799, 922
SsiI	CCGC	3 cut(s)	200, 509, 842
SspMI	CTAG	2 cut(s)	575, 911
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	3 cut(s)	37, 329, 384
TaiI	ACGT	1 cut(s)	791
TaqI	TCGA	3 cut(s)	441, 590, 652
TasI	AATT	5 cut(s)	194, 474, 567, 799, 922
TauI	GCSGC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	362, 773
Tru9I	TTAA	2 cut(s)	362, 773
TscAI	CASTG	2 cut(s)	42, 348
TseFI	GTSAC	4 cut(s)	31, 234, 247, 817
TseI	GCWGC	4 cut(s)	109, 223, 506, 839
Tsp45I	GTSAC	4 cut(s)	31, 234, 247, 817
TspDTI	ATGAA	3 cut(s)	108, 417, 747
TspRI	CASTG	2 cut(s)	42, 348
Tth111I	GACNNNGTC	1 cut(s)	815
VneI	GTGCAC	1 cut(s)	784
VpaK11BI	GGWCC	1 cut(s)	844
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	944
XmnI	GAANNNNTTC	2 cut(s)	81, 800
XspI	CTAG	2 cut(s)	575, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.