Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010837

Physical Location & Seq

Genomic Coordinates Reverse (-)

47854118 .. 47856134

Gene Structure 2017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG284000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGAACTTGTTTCGCTTAGTGGATCATGAGGATTTCTTTGCTCGCCGTTGCATCATGGTCAACGGACCAGTCATAGTTGGAGCTGGTCCATCTGGCTTGGCAACGGCAGCTTGCCTCAGGGATCAAGGAGTCCCATTCGAAGTCCTTGAAAGAGCCGAGTGCATAGCCTCACTGTGGCAAAAACGCACCTATGACAGGCTCAAGCTTCATCTTCCCAAGGCATTTTGCCAACTCCCTAAACTTCCATTCCCTCAGGATTTCCCTGAGTATCCAACAAAGAGACAATTCATCGACTACCTTGAATCATACGCCAAACACTTTGAAATCAACCCAAAATTCAACTCCTCCGTCCAATCAGCCCGCTACGACGAGACCAGCGGTTTCTGGAGGGTCAAGACAGTTTCAACAACCGGGTCAACCCGATCAGAGGTCGAGTACATCTGCAGGTGGCTCATAGTTGCCACCGGCGAAAATGCCGAGTGTGTGGTGCCTGACATCGACGGACTCAGCGAGTTTGGCGGCGAAGTTGTCCACGCTTGTGAGTACAAGTCCGGCGAGAAGTACAAGGGACAGAAAGTACTTGTCGTCGGTTGTGGAAATTCCGGCATGGAACTCTCTCTTGACCTCTGCAACCACAATGCCTCCCCTTCCATGGTCGTTAGAAGCTCGGTTCATGTCTTGCCAAGAGAAATCTATGGAAAATCGACATTCGAGTTGGCGGTCTTTTTGCTAAAATGGCTACCAGTCTGGTTAGCTGACAAGCTCCTCCTACTTCTCTCATGGTTGATACTCGGAAGCATCGAGAAATACGGGCTCAACAGGCCTTCCGTAGGCCCATTGGAGCTAAAGAACACACAAGGAAAGACCCCTGTTCTTGACATTGGAGCACTAGACAAAATCAAGTCCGGTGGTATCAAAGTCGTTCCCGGAATCAAGAGATTCTCATACGGCCGCGTTGAGCTTGTCGACGGCGAAGTTCTTGACATTGATTCAGTTGTTCTAGCTACAGGATACCGCAGCAATGTTCCTTCTTGGCTACAGGTGAGAAAAAGTTTCGAAAAACTTGTTGTTTTTGTCTGTTTGCTTGCTTGCAAAGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009735 GO:0009741 GO:0009742 GO:0009755 GO:0009850 GO:0009851 GO:0009889 GO:0009987 GO:0010033 GO:0010600 GO:0010817 GO:0014070 GO:0016491 GO:0016705 GO:0016709 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043401 GO:0044237 GO:0044249 GO:0046885 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0090354 GO:0103075 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase

Protein Analysis

368

Amino Acids

41.1

Weight (kDa)

7.93

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_3	PF13738	25 - 224	4.9e-24	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2	PF07992	25 - 222	8.9e-11	Pyridine nucleotide-disulphide oxidoreductase
FMO-like	PF00743	26 - 345	9.3e-29	Flavin-binding monooxygenase-like
Lys_Orn_oxgnase	PF13434	90 - 218	1.4e-13	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04180 AT4G28720 AT5G43890
fragaria_vesca	FvH4_2g20150 FvH4_2g20150
malus_domestica	MD05G1184800.v1.1 MD10G1172800.v1.1
prunus_persica	Prupe.8G211000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153991 RchiOBHm_Chr6g0285851
rosa_laevigata	RLG00000012604
rosa_multiflora	Rmu_sc0004321.1_g000011 Rmu_sc0029085.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182640
rosa_rugosa	Rorug06G0177300
rosa_samantha	Rh6AG289200 Rh6BG291100 Rh6CG292000 Rh6DG284000
rosa_wichuraiana	Rw6G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	438
Acc36I	ACCTGC	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	969
AccII	CGCG	1 cut(s)	957
AciI	CCGC	6 cut(s)	364, 381, 522, 722, 955, 1018
AclWI	GGATC	2 cut(s)	33, 132
AcoI	YGGCCR	1 cut(s)	952
AcsI	RAATTY	2 cut(s)	338, 601
AfaI	GTAC	4 cut(s)	440, 548, 566, 582
AfiI	CCNNNNNNNGG	5 cut(s)	177, 198, 430, 655, 833
AgsI	TTSAA	5 cut(s)	152, 305, 326, 343, 408
AleI	CACNNNNGTG	1 cut(s)	540
Alw21I	GWGCWC	1 cut(s)	892
Alw26I	GTCTC	2 cut(s)	277, 368
AlwI	GGATC	2 cut(s)	33, 132
AoxI	GGCC	3 cut(s)	824, 835, 952
ApeKI	GCWGC	2 cut(s)	110, 1020
ApoI	RAATTY	2 cut(s)	338, 601
AspS9I	GGNCC	3 cut(s)	68, 89, 836
AsuC2I	CCSGG	2 cut(s)	415, 930
AsuHPI	GGTGA	1 cut(s)	1057
AsuII	TTCGAA	2 cut(s)	141, 1059
AvaII	GGWCC	2 cut(s)	68, 89
AxyI	CCTNAGG	2 cut(s)	119, 255
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	819
Bbv12I	GWGCWC	1 cut(s)	892
BbvI	GCAGC	2 cut(s)	122, 1032
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	4 cut(s)	33, 123, 967, 988
BciVI	GTATCC	2 cut(s)	282, 1007
BcnI	CCSGG	2 cut(s)	415, 930
BcoDI	GTCTC	2 cut(s)	277, 368
BfaI	CTAG	2 cut(s)	893, 1004
BfmI	CTRYAG	3 cut(s)	445, 1008, 1040
BfuAI	ACCTGC	1 cut(s)	438
BfuI	GTATCC	2 cut(s)	282, 1007
BisI	GCNGC	4 cut(s)	111, 523, 955, 1021
BlsI	GCNGC	4 cut(s)	112, 524, 956, 1022
BmcAI	AGTACT	1 cut(s)	582
Bme1390I	CCNGG	2 cut(s)	415, 930
Bme18I	GGWCC	2 cut(s)	68, 89
BmgT120I	GGNCC	3 cut(s)	68, 89, 836
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	415, 930
BmsI	GCATC	2 cut(s)	63, 810
BpmI	CTGGAG	1 cut(s)	409
Bpu14I	TTCGAA	2 cut(s)	141, 1059
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	2 cut(s)	415, 930
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	219, 654
BsaWI	WCCGGW	1 cut(s)	908
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 629, 659
Bsc4I	CCNNNNNNNGG	5 cut(s)	177, 198, 430, 655, 833
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	2 cut(s)	71, 746
Bse21I	CCTNAGG	2 cut(s)	119, 255
Bse3DI	GCAATG	1 cut(s)	1030
BseDI	CCNNGG	2 cut(s)	219, 654
BseLI	CCNNNNNNNGG	5 cut(s)	177, 198, 430, 655, 833
BseMI	GCAATG	1 cut(s)	1030
BseMII	CTCAG	4 cut(s)	133, 258, 269, 523
BseNI	ACTGG	2 cut(s)	71, 746
BseRI	GAGGAG	2 cut(s)	337, 758
BseX3I	CGGCCG	1 cut(s)	952
BseXI	GCAGC	2 cut(s)	122, 1032
Bsh1236I	CGCG	1 cut(s)	957
Bsh1285I	CGRYCG	1 cut(s)	955
BshFI	GGCC	3 cut(s)	826, 837, 954
BshNI	GGYRCC	1 cut(s)	490
BsiEI	CGRYCG	1 cut(s)	955
BsiHKAI	GWGCWC	1 cut(s)	892
BsiSI	CCGG	6 cut(s)	414, 468, 555, 606, 909, 930
BslFI	GGGAC	2 cut(s)	119, 585
BslI	CCNNNNNNNGG	5 cut(s)	177, 198, 430, 655, 833
BsmAI	GTCTC	2 cut(s)	277, 368
BsmFI	GGGAC	2 cut(s)	119, 585
BsnI	GGCC	3 cut(s)	826, 837, 954
Bso31I	GGTCTC	1 cut(s)	368
Bsp119I	TTCGAA	2 cut(s)	141, 1059
Bsp1286I	GDGCHC	2 cut(s)	819, 892
Bsp143I	GATC	3 cut(s)	25, 124, 425
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	6 cut(s)	364, 381, 522, 722, 955, 1018
BspANI	GGCC	3 cut(s)	826, 837, 954
BspCNI	CTCAG	4 cut(s)	132, 259, 268, 522
BspFNI	CGCG	1 cut(s)	957
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	492
BspMAI	CTGCAG	1 cut(s)	449
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	2 cut(s)	33, 132
BspT104I	TTCGAA	2 cut(s)	141, 1059
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	1030
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	71, 746
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	219, 654
BssMI	GATC	3 cut(s)	25, 124, 425
BssT1I	CCWWGG	2 cut(s)	219, 654
Bst4CI	ACNGT	2 cut(s)	177, 403
BstBI	TTCGAA	2 cut(s)	141, 1059
BstC8I	GCNNGC	5 cut(s)	46, 115, 364, 1089, 1093
BstDEI	CTNAG	6 cut(s)	19, 119, 255, 267, 509, 1104
BstDSI	CCRYGG	1 cut(s)	654
BstENI	CCTNNNNNAGG	2 cut(s)	196, 831
BstFNI	CGCG	1 cut(s)	957
BstKTI	GATC	3 cut(s)	28, 127, 428
BstMAI	GTCTC	2 cut(s)	277, 368
BstMBI	GATC	3 cut(s)	25, 124, 425
BstMCI	CGRYCG	1 cut(s)	955
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 519, 739, 823
BstSCI	CCNGG	2 cut(s)	413, 928
BstSFI	CTRYAG	3 cut(s)	445, 1008, 1040
BstUI	CGCG	1 cut(s)	957
BstV1I	GCAGC	2 cut(s)	122, 1032
BstZI	CGGCCG	1 cut(s)	952
Bsu36I	CCTNAGG	2 cut(s)	119, 255
BsuI	GTATCC	2 cut(s)	282, 1007
BsuRI	GGCC	3 cut(s)	826, 837, 954
BtgI	CCRYGG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	438
Cac8I	GCNNGC	5 cut(s)	46, 115, 364, 1089, 1093
CciI	TCATGA	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	3 cut(s)	68, 89, 836
Csp6I	GTAC	4 cut(s)	439, 547, 565, 581
CspCI	CAANNNNNGTGG	2 cut(s)	892, 927
CviAII	CATG	6 cut(s)	29, 58, 610, 655, 677, 783
CviQI	GTAC	4 cut(s)	439, 547, 565, 581
DdeI	CTNAG	6 cut(s)	19, 119, 255, 267, 509, 1104
DpnI	GATC	3 cut(s)	27, 126, 427
DpnII	GATC	3 cut(s)	25, 124, 425
EaeI	YGGCCR	1 cut(s)	952
EagI	CGGCCG	1 cut(s)	952
EclXI	CGGCCG	1 cut(s)	952
Eco130I	CCWWGG	2 cut(s)	219, 654
Eco147I	AGGCCT	1 cut(s)	826
Eco24I	GRGCYC	1 cut(s)	819
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	68, 89
Eco52I	CGGCCG	1 cut(s)	952
Eco81I	CCTNAGG	2 cut(s)	119, 255
EcoNI	CCTNNNNNAGG	2 cut(s)	196, 831
EcoT14I	CCWWGG	2 cut(s)	219, 654
EcoT38I	GRGCYC	1 cut(s)	819
ErhI	CCWWGG	2 cut(s)	219, 654
FaeI	CATG	6 cut(s)	32, 61, 613, 658, 680, 786
FaqI	GGGAC	2 cut(s)	119, 585
FatI	CATG	6 cut(s)	28, 57, 609, 654, 676, 782
FauI	CCCGC	1 cut(s)	371
FblI	GTMKAC	1 cut(s)	969
Fnu4HI	GCNGC	4 cut(s)	111, 523, 955, 1021
FriOI	GRGCYC	1 cut(s)	819
Fsp4HI	GCNGC	4 cut(s)	111, 523, 955, 1021
FspBI	CTAG	2 cut(s)	893, 1004
GluI	GCNGC	4 cut(s)	111, 523, 955, 1021
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	3 cut(s)	826, 837, 954
HapII	CCGG	6 cut(s)	414, 468, 555, 606, 909, 930
Hin1II	CATG	6 cut(s)	32, 61, 613, 658, 680, 786
HincII	GTYRAC	3 cut(s)	64, 420, 970
HindII	GTYRAC	3 cut(s)	64, 420, 970
HindIII	AAGCTT	2 cut(s)	206, 1101
HinfI	GANTC	6 cut(s)	132, 305, 507, 933, 942, 992
HpaII	CCGG	6 cut(s)	414, 468, 555, 606, 909, 930
HphI	GGTGA	1 cut(s)	1057
Hpy166II	GTNNAC	4 cut(s)	64, 420, 535, 970
Hpy188I	TCNGA	2 cut(s)	430, 797
Hpy188III	TCNNGA	9 cut(s)	29, 257, 388, 397, 623, 805, 878, 937, 983
Hpy8I	GTNNAC	4 cut(s)	64, 420, 535, 970
Hpy99I	CGWCG	4 cut(s)	374, 506, 593, 974
HpyAV	CCTTC	3 cut(s)	660, 837, 1041
HpyCH4III	ACNGT	2 cut(s)	177, 403
HpyCH4V	TGCA	5 cut(s)	54, 165, 447, 633, 1095
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 519, 739, 823
HpyF3I	CTNAG	6 cut(s)	19, 119, 255, 267, 509, 1104
Hsp92II	CATG	6 cut(s)	32, 61, 613, 658, 680, 786
Kzo9I	GATC	3 cut(s)	25, 124, 425
LmnI	GCTCC	4 cut(s)	83, 771, 844, 887
Lsp1109I	GCAGC	2 cut(s)	122, 1032
LweI	GCATC	2 cut(s)	63, 810
MaeI	CTAG	2 cut(s)	893, 1004
MalI	GATC	3 cut(s)	27, 126, 427
MboI	GATC	3 cut(s)	25, 124, 425
MboII	GAAGA	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	819, 892
MluCI	AATT	3 cut(s)	287, 338, 601
MlyI	GAGTC	2 cut(s)	141, 501
MmeI	TCCRAC	2 cut(s)	61, 299
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	6 cut(s)	414, 468, 555, 606, 909, 930
MspR9I	CCNGG	2 cut(s)	415, 930
MvnI	CGCG	1 cut(s)	957
MwoI	GCNNNNNNNGC	4 cut(s)	110, 519, 739, 823
NciI	CCSGG	2 cut(s)	415, 930
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	3 cut(s)	25, 124, 425
NlaIII	CATG	6 cut(s)	32, 61, 613, 658, 680, 786
NlaIV	GGNNCC	1 cut(s)	492
NmeAIII	GCCGAG	2 cut(s)	184, 505
NspV	TTCGAA	2 cut(s)	141, 1059
OliI	CACNNNNGTG	1 cut(s)	540
PagI	TCATGA	1 cut(s)	28
PaqCI	CACCTGC	1 cut(s)	438
PceI	AGGCCT	1 cut(s)	826
PcsI	WCGNNNNNNNCGW	2 cut(s)	510, 801
PfeI	GAWTC	4 cut(s)	305, 933, 942, 992
PfoI	TCCNGGA	1 cut(s)	928
PkrI	GCNGC	4 cut(s)	112, 524, 956, 1022
PleI	GAGTC	2 cut(s)	140, 501
PpsI	GAGTC	2 cut(s)	140, 501
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	3 cut(s)	68, 89, 836
PstI	CTGCAG	1 cut(s)	449
RsaI	GTAC	4 cut(s)	440, 548, 566, 582
RsaNI	GTAC	4 cut(s)	439, 547, 565, 581
RseI	CAYNNNNRTG	1 cut(s)	540
SalI	GTCGAC	1 cut(s)	968
SatI	GCNGC	4 cut(s)	111, 523, 955, 1021
Sau3AI	GATC	3 cut(s)	25, 124, 425
Sau96I	GGNCC	3 cut(s)	68, 89, 836
ScaI	AGTACT	1 cut(s)	582
SchI	GAGTC	2 cut(s)	141, 501
ScrFI	CCNGG	2 cut(s)	415, 930
SduI	GDGCHC	2 cut(s)	819, 892
SfaNI	GCATC	2 cut(s)	63, 810
SfcI	CTRYAG	3 cut(s)	445, 1008, 1040
SfuI	TTCGAA	2 cut(s)	141, 1059
SgrAI	CRCCGGYG	1 cut(s)	467
SinI	GGWCC	2 cut(s)	68, 89
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	287, 338, 601
SseBI	AGGCCT	1 cut(s)	826
SsiI	CCGC	6 cut(s)	364, 381, 522, 722, 955, 1018
SspMI	CTAG	2 cut(s)	893, 1004
StuI	AGGCCT	1 cut(s)	826
StyD4I	CCNGG	2 cut(s)	413, 928
StyI	CCWWGG	2 cut(s)	219, 654
TaaI	ACNGT	2 cut(s)	177, 403
TaqI	TCGA	9 cut(s)	141, 294, 435, 501, 707, 714, 804, 969, 1059
TasI	AATT	3 cut(s)	287, 338, 601
TatI	WGTACW	4 cut(s)	438, 546, 564, 580
TauI	GCSGC	2 cut(s)	525, 957
TfiI	GAWTC	4 cut(s)	305, 933, 942, 992
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	2 cut(s)	110, 1020
TspDTI	ATGAA	3 cut(s)	200, 280, 665
TspGWI	ACGGA	4 cut(s)	81, 340, 519, 820
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	2 cut(s)	68, 89
XagI	CCTNNNNNAGG	2 cut(s)	196, 831
XapI	RAATTY	2 cut(s)	338, 601
XmiI	GTMKAC	1 cut(s)	969
XspI	CTAG	2 cut(s)	893, 1004
ZrmI	AGTACT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.