Rh6BG291100

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010837
Physical Location & Seq
Reverse (-)
51625756 .. 51627800
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG291100.1

Sequence Viewer

Length: 1107 bp
ATGGAGAACTTGTTTCGCTTAGTGGATCATGAGGATTTCTTTGCTCGCCGTTGCATCATGGTCAACGGACCAGTCATAGTTGGAGCTGGTCCGTCTGGCTTGGCAACGGCAGCTTGCCTCAGGGACCAAGGAGTCCCATTCGAAGTCCTTGAAAGAGCCGAGTGCATAGCCTCACTGTGGCAAAAACGCACCTATGACAGGCTCAAGCTTCATCTTCCCAAGGCATTTTGCCAACTCCCTAAACTTCCATTCCCTGAGGATTTCCCTGAGTATCCAACAAAGAGACAATTCATCGACTACCTTGAATCATACGCCAAACACTTTGAAATCAACCCAAAATTCAACTCCTCCGTCCAATCAGCCCGCTACGACGAGACCAGCGGTTTCTGGAGGGTCAAGACTGTTTCAACAACCGGGTCAACCCGATCAGAGGTCGAGTACATCTGCAGGTGGCTCATAGTTGCCACCGGCGAAAATGCCGAGTGTGTGGTGCCTGACATCGACGGACTCAGCGAGTTTGGCCGCGAAGTTGTCCACGCTTGTGAGTACAAGTCCGGCGAGAAGTACAAGGGACAGAAAGTACTTGTCGTCGGTTGTGGAAATTCCGGCATGGAACTCTCTCTTGACCTCTGCAACCACAATGCCTCGCCTTCCATGGTCGTTAGAAGCTCGGTTCATGTCTTGCCTAGAGAAATCTATGGAAAATCGACATTCGAGTTGGCAGTCTTTTTGCTAAAATGGCTACCAGTCTGGTTAGCTGACAAGCTTCTCCTACTTTTCTCATGGTTGATACTCGGAAGCATCGAGAAATACGGGCTCAACAGGCCTTCCGTAGGCCCAATGGAGCTAAAGAACACACAAGGAAAGACCCCTGTTCTTGACATTGGAGCACTAGACAAAATCAAGTCAGGTGGTATCAAAGTCGTTCCCGGAATCAAGAGATTCTCATACGGCCGCGTTGAGCTTGTCGACGGCGAAGTTCTCGACATTGATTCAGTTGTTCTAGCTACAGGATACCGCAGCAATGTTCCTTCTTGGCTACAGGTGAGAAAAAGTTTCGAAAAACTTGTAGTTTATGTCTGTTTGCTTGCTTGCAAAGAAGCTTAG

Protein Analysis

368

Amino Acids

41.27

Weight (kDa)

7.93

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_3 PF13738 25 - 224 3.4e-24 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2 PF07992 25 - 222 1.3e-10 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 26 - 345 3.2e-28 Flavin-binding monooxygenase-like
Lys_Orn_oxgnase PF13434 90 - 218 1.4e-13 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 438
AasI GACNNNNNNGTC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 490
AccI GTMKAC 1 cut(s) 969
AccII CGCG 2 cut(s) 525, 957
AciI CCGC 5 cut(s) 364, 381, 523, 955, 1018
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 2 cut(s) 520, 952
AcsI RAATTY 2 cut(s) 338, 601
AfaI GTAC 4 cut(s) 440, 548, 566, 582
AfiI CCNNNNNNNGG 4 cut(s) 177, 198, 430, 833
AgsI TTSAA 5 cut(s) 152, 305, 326, 343, 408
AleI CACNNNNGTG 1 cut(s) 540
Alw21I GWGCWC 1 cut(s) 892
Alw26I GTCTC 2 cut(s) 277, 368
AlwI GGATC 1 cut(s) 33
AoxI GGCC 4 cut(s) 520, 824, 835, 952
ApeKI GCWGC 2 cut(s) 110, 1020
ApoI RAATTY 2 cut(s) 338, 601
AspS9I GGNCC 4 cut(s) 68, 89, 124, 836
AsuC2I CCSGG 2 cut(s) 415, 930
AsuHPI GGTGA 1 cut(s) 1057
AsuII TTCGAA 2 cut(s) 141, 1059
AvaII GGWCC 3 cut(s) 68, 89, 124
AxyI CCTNAGG 2 cut(s) 119, 255
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 819
Bbv12I GWGCWC 1 cut(s) 892
BbvI GCAGC 2 cut(s) 122, 1032
BceAI ACGGC 4 cut(s) 33, 123, 967, 988
BciVI GTATCC 2 cut(s) 282, 1007
BcnI CCSGG 2 cut(s) 415, 930
BcoDI GTCTC 2 cut(s) 277, 368
BfaI CTAG 3 cut(s) 687, 893, 1004
BfmI CTRYAG 3 cut(s) 445, 1008, 1040
BfuAI ACCTGC 1 cut(s) 438
BfuI GTATCC 2 cut(s) 282, 1007
BisI GCNGC 4 cut(s) 111, 523, 955, 1021
BlsI GCNGC 4 cut(s) 112, 524, 956, 1022
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 2 cut(s) 415, 930
Bme18I GGWCC 3 cut(s) 68, 89, 124
BmgT120I GGNCC 4 cut(s) 68, 89, 124, 836
BmiI GGNNCC 2 cut(s) 125, 492
BmrFI CCNGG 2 cut(s) 415, 930
BmsI GCATC 2 cut(s) 63, 810
BpmI CTGGAG 1 cut(s) 409
Bpu14I TTCGAA 2 cut(s) 141, 1059
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 415, 930
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 127, 219, 654
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 198, 430, 833
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 2 cut(s) 71, 746
Bse21I CCTNAGG 2 cut(s) 119, 255
Bse3DI GCAATG 1 cut(s) 1030
BseDI CCNNGG 3 cut(s) 127, 219, 654
BseLI CCNNNNNNNGG 4 cut(s) 177, 198, 430, 833
BseMI GCAATG 1 cut(s) 1030
BseMII CTCAG 4 cut(s) 133, 246, 258, 523
BseNI ACTGG 2 cut(s) 71, 746
BseRI GAGGAG 1 cut(s) 337
BseX3I CGGCCG 1 cut(s) 952
BseXI GCAGC 2 cut(s) 122, 1032
Bsh1236I CGCG 2 cut(s) 525, 957
Bsh1285I CGRYCG 1 cut(s) 955
BshFI GGCC 4 cut(s) 522, 826, 837, 954
BshNI GGYRCC 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 955
BsiHKAI GWGCWC 1 cut(s) 892
BsiSI CCGG 5 cut(s) 414, 468, 555, 606, 930
BslFI GGGAC 3 cut(s) 119, 137, 585
BslI CCNNNNNNNGG 4 cut(s) 177, 198, 430, 833
BsmAI GTCTC 2 cut(s) 277, 368
BsmFI GGGAC 3 cut(s) 119, 137, 585
BsnI GGCC 4 cut(s) 522, 826, 837, 954
Bso31I GGTCTC 1 cut(s) 368
Bsp119I TTCGAA 2 cut(s) 141, 1059
Bsp1286I GDGCHC 2 cut(s) 819, 892
Bsp143I GATC 2 cut(s) 25, 425
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 5 cut(s) 364, 381, 523, 955, 1018
BspANI GGCC 4 cut(s) 522, 826, 837, 954
BspCNI CTCAG 4 cut(s) 132, 247, 259, 522
BspFNI CGCG 2 cut(s) 525, 957
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 125, 492
BspMAI CTGCAG 1 cut(s) 449
BspMI ACCTGC 1 cut(s) 438
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 2 cut(s) 141, 1059
BspT107I GGYRCC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 1030
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 2 cut(s) 71, 746
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 3 cut(s) 127, 219, 654
BssMI GATC 2 cut(s) 25, 425
BssT1I CCWWGG 3 cut(s) 127, 219, 654
Bst4CI ACNGT 2 cut(s) 177, 403
BstBI TTCGAA 2 cut(s) 141, 1059
BstC8I GCNNGC 5 cut(s) 46, 115, 364, 1089, 1093
BstDEI CTNAG 6 cut(s) 19, 119, 255, 267, 509, 1104
BstDSI CCRYGG 1 cut(s) 654
BstENI CCTNNNNNAGG 2 cut(s) 196, 831
BstFNI CGCG 2 cut(s) 525, 957
BstKTI GATC 2 cut(s) 28, 428
BstMAI GTCTC 2 cut(s) 277, 368
BstMBI GATC 2 cut(s) 25, 425
BstMCI CGRYCG 1 cut(s) 955
BstMWI GCNNNNNNNGC 4 cut(s) 110, 519, 739, 823
BstSCI CCNGG 2 cut(s) 413, 928
BstSFI CTRYAG 3 cut(s) 445, 1008, 1040
BstUI CGCG 2 cut(s) 525, 957
BstV1I GCAGC 2 cut(s) 122, 1032
BstZI CGGCCG 1 cut(s) 952
Bsu36I CCTNAGG 2 cut(s) 119, 255
BsuI GTATCC 2 cut(s) 282, 1007
BsuRI GGCC 4 cut(s) 522, 826, 837, 954
BtgI CCRYGG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 173
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 5 cut(s) 46, 115, 364, 1089, 1093
CciI TCATGA 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 4 cut(s) 68, 89, 124, 836
Csp6I GTAC 4 cut(s) 439, 547, 565, 581
CspCI CAANNNNNGTGG 2 cut(s) 892, 927
CviAII CATG 6 cut(s) 29, 58, 610, 655, 677, 783
CviQI GTAC 4 cut(s) 439, 547, 565, 581
DdeI CTNAG 6 cut(s) 19, 119, 255, 267, 509, 1104
DpnI GATC 2 cut(s) 27, 427
DpnII GATC 2 cut(s) 25, 425
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 2 cut(s) 520, 952
EagI CGGCCG 1 cut(s) 952
EclXI CGGCCG 1 cut(s) 952
Eco130I CCWWGG 3 cut(s) 127, 219, 654
Eco147I AGGCCT 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 819
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 3 cut(s) 68, 89, 124
Eco52I CGGCCG 1 cut(s) 952
Eco81I CCTNAGG 2 cut(s) 119, 255
EcoNI CCTNNNNNAGG 2 cut(s) 196, 831
EcoT14I CCWWGG 3 cut(s) 127, 219, 654
EcoT38I GRGCYC 1 cut(s) 819
ErhI CCWWGG 3 cut(s) 127, 219, 654
FaeI CATG 6 cut(s) 32, 61, 613, 658, 680, 786
FaqI GGGAC 3 cut(s) 119, 137, 585
FatI CATG 6 cut(s) 28, 57, 609, 654, 676, 782
FauI CCCGC 1 cut(s) 371
FblI GTMKAC 1 cut(s) 969
Fnu4HI GCNGC 4 cut(s) 111, 523, 955, 1021
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 4 cut(s) 111, 523, 955, 1021
FspBI CTAG 3 cut(s) 687, 893, 1004
GluI GCNGC 4 cut(s) 111, 523, 955, 1021
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 4 cut(s) 522, 826, 837, 954
HapII CCGG 5 cut(s) 414, 468, 555, 606, 930
Hin1II CATG 6 cut(s) 32, 61, 613, 658, 680, 786
HincII GTYRAC 3 cut(s) 64, 420, 970
HindII GTYRAC 3 cut(s) 64, 420, 970
HindIII AAGCTT 3 cut(s) 206, 764, 1101
HinfI GANTC 6 cut(s) 132, 305, 507, 933, 942, 992
HpaII CCGG 5 cut(s) 414, 468, 555, 606, 930
HphI GGTGA 1 cut(s) 1057
Hpy166II GTNNAC 4 cut(s) 64, 420, 535, 970
Hpy188I TCNGA 2 cut(s) 430, 797
Hpy188III TCNNGA 8 cut(s) 29, 388, 397, 623, 805, 878, 937, 983
Hpy8I GTNNAC 4 cut(s) 64, 420, 535, 970
Hpy99I CGWCG 4 cut(s) 374, 506, 593, 974
HpyAV CCTTC 3 cut(s) 660, 837, 1041
HpyCH4III ACNGT 2 cut(s) 177, 403
HpyCH4V TGCA 5 cut(s) 54, 165, 447, 633, 1095
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 519, 739, 823
HpyF3I CTNAG 6 cut(s) 19, 119, 255, 267, 509, 1104
Hsp92II CATG 6 cut(s) 32, 61, 613, 658, 680, 786
Kzo9I GATC 2 cut(s) 25, 425
LmnI GCTCC 3 cut(s) 83, 844, 887
Lsp1109I GCAGC 2 cut(s) 122, 1032
LweI GCATC 2 cut(s) 63, 810
MaeI CTAG 3 cut(s) 687, 893, 1004
MalI GATC 2 cut(s) 27, 427
MboI GATC 2 cut(s) 25, 425
MboII GAAGA 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 819, 892
MluCI AATT 3 cut(s) 287, 338, 601
MlyI GAGTC 2 cut(s) 141, 501
MmeI TCCRAC 2 cut(s) 61, 299
MnlI CCTC 9 cut(s) 25, 128, 181, 250, 358, 384, 424, 638, 655
MslI CAYNNNNRTG 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 381
MspI CCGG 5 cut(s) 414, 468, 555, 606, 930
MspR9I CCNGG 2 cut(s) 415, 930
MvnI CGCG 2 cut(s) 525, 957
MwoI GCNNNNNNNGC 4 cut(s) 110, 519, 739, 823
NciI CCSGG 2 cut(s) 415, 930
NcoI CCATGG 1 cut(s) 654
NdeII GATC 2 cut(s) 25, 425
NlaIII CATG 6 cut(s) 32, 61, 613, 658, 680, 786
NlaIV GGNNCC 2 cut(s) 125, 492
NmeAIII GCCGAG 2 cut(s) 184, 505
NspV TTCGAA 2 cut(s) 141, 1059
OliI CACNNNNGTG 1 cut(s) 540
PagI TCATGA 1 cut(s) 28
PaqCI CACCTGC 1 cut(s) 438
PceI AGGCCT 1 cut(s) 826
PcsI WCGNNNNNNNCGW 2 cut(s) 510, 801
PfeI GAWTC 4 cut(s) 305, 933, 942, 992
PfoI TCCNGGA 1 cut(s) 928
PkrI GCNGC 4 cut(s) 112, 524, 956, 1022
PleI GAGTC 2 cut(s) 140, 501
PpsI GAGTC 2 cut(s) 140, 501
PspN4I GGNNCC 2 cut(s) 125, 492
PspPI GGNCC 4 cut(s) 68, 89, 124, 836
PstI CTGCAG 1 cut(s) 449
RsaI GTAC 4 cut(s) 440, 548, 566, 582
RsaNI GTAC 4 cut(s) 439, 547, 565, 581
RseI CAYNNNNRTG 1 cut(s) 540
SalI GTCGAC 1 cut(s) 968
SatI GCNGC 4 cut(s) 111, 523, 955, 1021
Sau3AI GATC 2 cut(s) 25, 425
Sau96I GGNCC 4 cut(s) 68, 89, 124, 836
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 2 cut(s) 141, 501
ScrFI CCNGG 2 cut(s) 415, 930
SduI GDGCHC 2 cut(s) 819, 892
SfaNI GCATC 2 cut(s) 63, 810
SfcI CTRYAG 3 cut(s) 445, 1008, 1040
SfuI TTCGAA 2 cut(s) 141, 1059
SgrAI CRCCGGYG 1 cut(s) 467
SinI GGWCC 3 cut(s) 68, 89, 124
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 287, 338, 601
SseBI AGGCCT 1 cut(s) 826
SsiI CCGC 5 cut(s) 364, 381, 523, 955, 1018
SspMI CTAG 3 cut(s) 687, 893, 1004
StuI AGGCCT 1 cut(s) 826
StyD4I CCNGG 2 cut(s) 413, 928
StyI CCWWGG 3 cut(s) 127, 219, 654
TaaI ACNGT 2 cut(s) 177, 403
TasI AATT 3 cut(s) 287, 338, 601
TatI WGTACW 4 cut(s) 438, 546, 564, 580
TauI GCSGC 2 cut(s) 525, 957
TfiI GAWTC 4 cut(s) 305, 933, 942, 992
TscAI CASTG 1 cut(s) 180
TseI GCWGC 2 cut(s) 110, 1020
TspDTI ATGAA 3 cut(s) 200, 280, 665
TspGWI ACGGA 5 cut(s) 81, 81, 340, 519, 820
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 3 cut(s) 68, 89, 124
XagI CCTNNNNNAGG 2 cut(s) 196, 831
XapI RAATTY 2 cut(s) 338, 601
XmiI GTMKAC 1 cut(s) 969
XspI CTAG 3 cut(s) 687, 893, 1004
ZrmI AGTACT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.