Rroxscaffold_7G00182640

monooxygenase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
21755471 .. 21757380
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182640.1

Sequence Viewer

Length: 1275 bp
ATGGAGAACTTGTTTCGCTTAGTGGATCATGAGGATTTATTTGCTCGCCGTTGCATCATGGTCAATGGACCAGTCATAGTTGGAGCTGGTCCGTCTGGCTTGGCAACGGCAGCTTGCCTCAGGGACCAAGGAGTCCCATTCGAAGTCCTTGAAAGAGCCGAGTGCATAGCCTCACTGTGGCAAAAACGCACCTATGACAGGCTCAAGCTTCATCTTCCCAAGGCATTTTGCCAACTCCCTAAACTTCCATTCCCTGAGGACTTCCCTGAGTACCCAACAAAGAGACAATTCATCGACTACCTTGAATCATACGCCAAACACTTTGAAATCAACCCAAAATTCAACTCCTCCGTCCAATCAGCCCGCTACGACGAGACCAGCGGTTTCTGGAGGGTCAAGACTGTTTCAACAACCGGGTCAACCCGATCAGAGGTCGAGTACATCTGCAGGTGGCTCATAGTTGCCACCGGCGAAAATGCCGAGTGTGTGGTGCCTGACATCGACGGACTCAGCGAGTTTGGCGGTGAAGTTGTCCACGCTTGTGAGTACAAGTCCGGCGAGAAGTACAAGGGACAGAAAGTACTTGTCGTCGGTTGTGGAAATTCCGGCATGGAAGTCTCTCTTGACCTCTGTAACCACAATGCCTCGCCTTCCATGGTCGTTAGAAGCTCAGTTCATGTCTTGCCTAGAGAAATCTATGGAAAATCGACATTCGAGTTGGCGGTCTTTTTGCTAAAATGGCTACCAGTCTGGTTAGCTGACAAGCTCCTCCTACTTTTCTCATTGTTGATACTCGGTAGCATCGAGAAATACGGGCTGAACAGGCCTTCCGTAGGCCCAATGGAGCTAAAGAACACACAAGGAAAGACCCCTGTTCTTGACATTGGAGCACTAGACAAAATCAAGTCCGGTGGTATCAAAGTCGTTCCCGGAATCAAGAGATTCTCATACGGCCGCGTTGAGCTTGTCGACGGCGAAGTTCTTGACATTGATTCAGTTGTTCTAGCTACAGGATACCGCAGCAATGTTCCTTCTTGGCTACAGGAAGGTGAATTTTTCTCCAAGAGCGGATTCCCAAAGCAGCCATTCCCACAGGGCTGGAAAGGAAATGCCGGACTCTATGCAGTCGGGTTCACAAGGAGAGGGCTCTCTGGTGCTTCATGTGACGCCATGAGAATAGCACAAGATATTGGAAACGTCTGGAAATGCGAAACCAAACAGAACAAGAAGAGAACCACCGCTGGCCATAGACGATGCATTTCCCAGACGTTCTAA

Protein Analysis

424

Amino Acids

47.19

Weight (kDa)

8.7

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_3 PF13738 25 - 224 3.5e-24 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2 PF07992 25 - 222 1.2e-10 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 26 - 344 1.4e-28 Flavin-binding monooxygenase-like
Lys_Orn_oxgnase PF13434 90 - 218 5.8e-14 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 438
AasI GACNNNNNNGTC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 490
AccBSI CCGCTC 1 cut(s) 1068
AccI GTMKAC 1 cut(s) 969
AccII CGCG 1 cut(s) 957
AciI CCGC 8 cut(s) 364, 381, 522, 722, 955, 1018, 1068, 1239
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 2 cut(s) 952, 1243
AcsI RAATTY 3 cut(s) 338, 601, 1052
AcyI GRCGYC 1 cut(s) 1167
AfaI GTAC 5 cut(s) 272, 440, 548, 566, 582
AfiI CCNNNNNNNGG 4 cut(s) 177, 198, 430, 833
AgsI TTSAA 5 cut(s) 152, 305, 326, 343, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 1055, 1087
AleI CACNNNNGTG 1 cut(s) 540
AloI GAACNNNNNNTCC 2 cut(s) 812, 844
AluBI AGCT 9 cut(s) 86, 113, 208, 669, 758, 766, 847, 964, 1007
AluI AGCT 9 cut(s) 86, 113, 208, 669, 758, 766, 847, 964, 1007
Alw21I GWGCWC 1 cut(s) 892
Alw26I GTCTC 3 cut(s) 277, 368, 622
AlwI GGATC 1 cut(s) 33
AoxI GGCC 4 cut(s) 824, 835, 952, 1243
ApeKI GCWGC 3 cut(s) 110, 1020, 1081
ApoI RAATTY 3 cut(s) 338, 601, 1052
AspS9I GGNCC 4 cut(s) 68, 89, 124, 836
AsuC2I CCSGG 2 cut(s) 415, 930
AsuHPI GGTGA 2 cut(s) 536, 1061
AsuII TTCGAA 1 cut(s) 141
AvaII GGWCC 3 cut(s) 68, 89, 124
AxyI CCTNAGG 2 cut(s) 119, 255
BalI TGGCCA 1 cut(s) 1245
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 1149
Bbv12I GWGCWC 1 cut(s) 892
BbvI GCAGC 3 cut(s) 122, 1032, 1093
BceAI ACGGC 4 cut(s) 33, 123, 967, 988
BciVI GTATCC 1 cut(s) 1007
BcnI CCSGG 2 cut(s) 415, 930
BcoDI GTCTC 3 cut(s) 277, 368, 622
BfaI CTAG 3 cut(s) 687, 893, 1004
BfmI CTRYAG 3 cut(s) 445, 1008, 1040
BfuAI ACCTGC 1 cut(s) 438
BfuI GTATCC 1 cut(s) 1007
BisI GCNGC 4 cut(s) 111, 955, 1021, 1082
BlsI GCNGC 4 cut(s) 112, 956, 1022, 1083
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 2 cut(s) 415, 930
Bme18I GGWCC 3 cut(s) 68, 89, 124
BmgT120I GGNCC 4 cut(s) 68, 89, 124, 836
BmiI GGNNCC 2 cut(s) 125, 492
BmrFI CCNGG 2 cut(s) 415, 930
BmsI GCATC 3 cut(s) 63, 810, 1244
BpmI CTGGAG 1 cut(s) 409
Bpu14I TTCGAA 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 415, 930
BsaHI GRCGYC 1 cut(s) 1167
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 127, 219, 654
BsaWI WCCGGW 1 cut(s) 908
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 198, 430, 833
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 2 cut(s) 71, 746
Bse21I CCTNAGG 2 cut(s) 119, 255
Bse3DI GCAATG 1 cut(s) 1030
BseDI CCNNGG 3 cut(s) 127, 219, 654
BseLI CCNNNNNNNGG 4 cut(s) 177, 198, 430, 833
BseMI GCAATG 1 cut(s) 1030
BseMII CTCAG 5 cut(s) 133, 246, 258, 523, 684
BseNI ACTGG 2 cut(s) 71, 746
BseRI GAGGAG 2 cut(s) 337, 758
BseX3I CGGCCG 1 cut(s) 952
BseXI GCAGC 3 cut(s) 122, 1032, 1093
Bsh1236I CGCG 1 cut(s) 957
Bsh1285I CGRYCG 1 cut(s) 955
BshFI GGCC 4 cut(s) 826, 837, 954, 1245
BshNI GGYRCC 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 955
BsiHKAI GWGCWC 1 cut(s) 892
BsiSI CCGG 7 cut(s) 414, 468, 555, 606, 909, 930, 1113
BslFI GGGAC 3 cut(s) 119, 137, 585
BslI CCNNNNNNNGG 4 cut(s) 177, 198, 430, 833
BsmAI GTCTC 3 cut(s) 277, 368, 622
BsmFI GGGAC 3 cut(s) 119, 137, 585
BsnI GGCC 4 cut(s) 826, 837, 954, 1245
Bso31I GGTCTC 1 cut(s) 368
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 892, 1149
Bsp143I GATC 2 cut(s) 25, 425
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 8 cut(s) 364, 381, 522, 722, 955, 1018, 1068, 1239
BspANI GGCC 4 cut(s) 826, 837, 954, 1245
BspCNI CTCAG 5 cut(s) 132, 247, 259, 522, 683
BspFNI CGCG 1 cut(s) 957
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 125, 492
BspMAI CTGCAG 1 cut(s) 449
BspMI ACCTGC 1 cut(s) 438
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 1068
BsrDI GCAATG 1 cut(s) 1030
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 2 cut(s) 71, 746
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 3 cut(s) 127, 219, 654
BssMI GATC 2 cut(s) 25, 425
BssNI GRCGYC 1 cut(s) 1167
BssT1I CCWWGG 3 cut(s) 127, 219, 654
Bst4CI ACNGT 2 cut(s) 177, 403
Bst6I CTCTTC 1 cut(s) 1223
BstACI GRCGYC 1 cut(s) 1167
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 4 cut(s) 46, 115, 364, 1243
BstDEI CTNAG 6 cut(s) 19, 119, 255, 267, 509, 670
BstDSI CCRYGG 1 cut(s) 654
BstENI CCTNNNNNAGG 2 cut(s) 196, 831
BstFNI CGCG 1 cut(s) 957
BstKTI GATC 2 cut(s) 28, 428
BstMAI GTCTC 3 cut(s) 277, 368, 622
BstMBI GATC 2 cut(s) 25, 425
BstMCI CGRYCG 1 cut(s) 955
BstMWI GCNNNNNNNGC 4 cut(s) 110, 519, 739, 823
BstSCI CCNGG 2 cut(s) 413, 928
BstSFI CTRYAG 3 cut(s) 445, 1008, 1040
BstUI CGCG 1 cut(s) 957
BstV1I GCAGC 3 cut(s) 122, 1032, 1093
BstXI CCANNNNNNTGG 1 cut(s) 1098
BstZI CGGCCG 1 cut(s) 952
Bsu36I CCTNAGG 2 cut(s) 119, 255
BsuI GTATCC 1 cut(s) 1007
BsuRI GGCC 4 cut(s) 826, 837, 954, 1245
BtgI CCRYGG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 173
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 4 cut(s) 46, 115, 364, 1243
CciI TCATGA 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 4 cut(s) 68, 89, 124, 836
CseI GACGC 1 cut(s) 1175
Csp6I GTAC 5 cut(s) 271, 439, 547, 565, 581
CspCI CAANNNNNGTGG 2 cut(s) 892, 927
CviAII CATG 7 cut(s) 29, 58, 610, 655, 677, 1161, 1171
CviQI GTAC 5 cut(s) 271, 439, 547, 565, 581
DdeI CTNAG 6 cut(s) 19, 119, 255, 267, 509, 670
DpnI GATC 2 cut(s) 27, 427
DpnII GATC 2 cut(s) 25, 425
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 2 cut(s) 952, 1243
EagI CGGCCG 1 cut(s) 952
Eam1104I CTCTTC 1 cut(s) 1223
EarI CTCTTC 1 cut(s) 1223
EclXI CGGCCG 1 cut(s) 952
Eco130I CCWWGG 3 cut(s) 127, 219, 654
Eco147I AGGCCT 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 1149
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 3 cut(s) 68, 89, 124
Eco52I CGGCCG 1 cut(s) 952
Eco81I CCTNAGG 2 cut(s) 119, 255
EcoNI CCTNNNNNAGG 2 cut(s) 196, 831
EcoT14I CCWWGG 3 cut(s) 127, 219, 654
EcoT22I ATGCAT 1 cut(s) 1259
EcoT38I GRGCYC 1 cut(s) 1149
ErhI CCWWGG 3 cut(s) 127, 219, 654
FaeI CATG 7 cut(s) 32, 61, 613, 658, 680, 1164, 1174
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 3 cut(s) 119, 137, 585
FatI CATG 7 cut(s) 28, 57, 609, 654, 676, 1160, 1170
FauI CCCGC 1 cut(s) 371
FblI GTMKAC 1 cut(s) 969
Fnu4HI GCNGC 4 cut(s) 111, 955, 1021, 1082
FriOI GRGCYC 1 cut(s) 1149
Fsp4HI GCNGC 4 cut(s) 111, 955, 1021, 1082
FspBI CTAG 3 cut(s) 687, 893, 1004
GluI GCNGC 4 cut(s) 111, 955, 1021, 1082
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 4 cut(s) 826, 837, 954, 1245
HapII CCGG 7 cut(s) 414, 468, 555, 606, 909, 930, 1113
HgaI GACGC 1 cut(s) 1175
Hin1I GRCGYC 1 cut(s) 1167
Hin1II CATG 7 cut(s) 32, 61, 613, 658, 680, 1164, 1174
HincII GTYRAC 2 cut(s) 420, 970
HindII GTYRAC 2 cut(s) 420, 970
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 8 cut(s) 132, 305, 507, 933, 942, 992, 1071, 1116
HpaII CCGG 7 cut(s) 414, 468, 555, 606, 909, 930, 1113
HphI GGTGA 2 cut(s) 536, 1061
Hpy166II GTNNAC 4 cut(s) 420, 535, 970, 1134
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 9 cut(s) 29, 388, 397, 623, 805, 878, 937, 983, 1201
Hpy8I GTNNAC 4 cut(s) 420, 535, 970, 1134
Hpy99I CGWCG 4 cut(s) 374, 506, 593, 974
HpyAV CCTTC 4 cut(s) 660, 837, 1040, 1041
HpyCH4III ACNGT 2 cut(s) 177, 403
HpyCH4IV ACGT 2 cut(s) 1197, 1268
HpyCH4V TGCA 5 cut(s) 54, 165, 447, 1124, 1257
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 519, 739, 823
HpyF3I CTNAG 6 cut(s) 19, 119, 255, 267, 509, 670
HpySE526I ACGT 2 cut(s) 1197, 1268
Hsp92I GRCGYC 1 cut(s) 1167
Hsp92II CATG 7 cut(s) 32, 61, 613, 658, 680, 1164, 1174
Kzo9I GATC 2 cut(s) 25, 425
LmnI GCTCC 4 cut(s) 83, 771, 844, 887
Lsp1109I GCAGC 3 cut(s) 122, 1032, 1093
LweI GCATC 3 cut(s) 63, 810, 1244
MaeI CTAG 3 cut(s) 687, 893, 1004
MaeII ACGT 2 cut(s) 1197, 1268
MaeIII GTNAC 2 cut(s) 632, 1163
MalI GATC 2 cut(s) 27, 427
MbiI CCGCTC 1 cut(s) 1068
MboI GATC 2 cut(s) 25, 425
MboII GAAGA 2 cut(s) 206, 1240
MhlI GDGCHC 2 cut(s) 892, 1149
MlsI TGGCCA 1 cut(s) 1245
MluCI AATT 4 cut(s) 287, 338, 601, 1052
MluNI TGGCCA 1 cut(s) 1245
MlyI GAGTC 3 cut(s) 141, 501, 1110
MmeI TCCRAC 1 cut(s) 61
Mox20I TGGCCA 1 cut(s) 1245
Mph1103I ATGCAT 1 cut(s) 1259
MscI TGGCCA 1 cut(s) 1245
MslI CAYNNNNRTG 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 1245
MspA1I CMGCKG 2 cut(s) 381, 1241
MspI CCGG 7 cut(s) 414, 468, 555, 606, 909, 930, 1113
MspR9I CCNGG 2 cut(s) 415, 930
MvnI CGCG 1 cut(s) 957
MwoI GCNNNNNNNGC 4 cut(s) 110, 519, 739, 823
NciI CCSGG 2 cut(s) 415, 930
NcoI CCATGG 1 cut(s) 654
NdeII GATC 2 cut(s) 25, 425
NlaIII CATG 7 cut(s) 32, 61, 613, 658, 680, 1164, 1174
NlaIV GGNNCC 2 cut(s) 125, 492
NmeAIII GCCGAG 2 cut(s) 184, 505
NmuCI GTSAC 1 cut(s) 1163
NsiI ATGCAT 1 cut(s) 1259
NspV TTCGAA 1 cut(s) 141
OliI CACNNNNGTG 1 cut(s) 540
PagI TCATGA 1 cut(s) 28
PaqCI CACCTGC 1 cut(s) 438
PceI AGGCCT 1 cut(s) 826
PcsI WCGNNNNNNNCGW 2 cut(s) 510, 801
PfeI GAWTC 5 cut(s) 305, 933, 942, 992, 1071
PfoI TCCNGGA 1 cut(s) 928
PkrI GCNGC 4 cut(s) 112, 956, 1022, 1083
PleI GAGTC 3 cut(s) 140, 501, 1110
PpsI GAGTC 3 cut(s) 140, 501, 1110
PspN4I GGNNCC 2 cut(s) 125, 492
PspPI GGNCC 4 cut(s) 68, 89, 124, 836
PstI CTGCAG 1 cut(s) 449
RsaI GTAC 5 cut(s) 272, 440, 548, 566, 582
RsaNI GTAC 5 cut(s) 271, 439, 547, 565, 581
RseI CAYNNNNRTG 1 cut(s) 540
SalI GTCGAC 1 cut(s) 968
SatI GCNGC 4 cut(s) 111, 955, 1021, 1082
Sau3AI GATC 2 cut(s) 25, 425
Sau96I GGNCC 4 cut(s) 68, 89, 124, 836
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 3 cut(s) 141, 501, 1110
ScrFI CCNGG 2 cut(s) 415, 930
SduI GDGCHC 2 cut(s) 892, 1149
SfaNI GCATC 3 cut(s) 63, 810, 1244
SfcI CTRYAG 3 cut(s) 445, 1008, 1040
SfuI TTCGAA 1 cut(s) 141
SgrAI CRCCGGYG 1 cut(s) 467
SinI GGWCC 3 cut(s) 68, 89, 124
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 4 cut(s) 287, 338, 601, 1052
SseBI AGGCCT 1 cut(s) 826
SsiI CCGC 8 cut(s) 364, 381, 522, 722, 955, 1018, 1068, 1239
SspMI CTAG 3 cut(s) 687, 893, 1004
StuI AGGCCT 1 cut(s) 826
StyD4I CCNGG 2 cut(s) 413, 928
StyI CCWWGG 3 cut(s) 127, 219, 654
TaaI ACNGT 2 cut(s) 177, 403
TaiI ACGT 2 cut(s) 1200, 1271
TaqI TCGA 8 cut(s) 141, 294, 435, 501, 707, 714, 804, 969
TasI AATT 4 cut(s) 287, 338, 601, 1052
TatI WGTACW 4 cut(s) 438, 546, 564, 580
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 5 cut(s) 305, 933, 942, 992, 1071
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 1163
TseI GCWGC 3 cut(s) 110, 1020, 1081
Tsp45I GTSAC 1 cut(s) 1163
TspDTI ATGAA 4 cut(s) 200, 280, 665, 1149
TspGWI ACGGA 4 cut(s) 81, 340, 519, 820
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 3 cut(s) 68, 89, 124
XagI CCTNNNNNAGG 2 cut(s) 196, 831
XapI RAATTY 3 cut(s) 338, 601, 1052
XmiI GTMKAC 1 cut(s) 969
XspI CTAG 3 cut(s) 687, 893, 1004
ZrmI AGTACT 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.