AT4G28740

Protein of unknown function (DUF3493)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011140
Physical Location & Seq
Forward (+)
14200903 .. 14202766
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28740.1

Sequence Viewer

Length: 1044 bp
ATGTCATCTTCTGAAACAGGGGAAGTTGCAGAGAATCTAGCGAGACCAATGGCTACTCTGGTCTCGTCTCAAACTTACATCTACCATTGTCATATTAGTAAACAAGCTCTTTATCAGGCAAAAGAATCATACTCTCATCGTAGAATTTCCCGTCATAATCACAGAGAAAGACTCGATTTTTCTCATAGAAACCATAGATTGACAATAACTAGAAAGCAGCAACCTTTGTCTTTCAACACCGTGTGTTTTGCCGCAGACGAGCCCTCCGAAATCAGTGCTGATGCTAGAATCCGTAGTGAGGTTCTGTCTCCGTTCAGATCAGTCCGTATGTTCTTCTACCTCGCCTTTATAGCAAGCGGTTCATTAGGAGGACTAATAGCCACTTCTAGGCTCATAGGTGCCCTGGCGAATCCGGCTAGATCAGGTGAAGTTCTTGAGATCGTTAAGGGTTTGGGAGTTGACATTGGTGCTGCTTCTCTCTTTGCGTTCCTATACTTCAACGAAAACAAGACCAAGAACGCGCAAATGGCTAGGCTCTCGAGGGAAGAGAATCTTGGCAAACTCAAAATGAGAGTCGAAGAGAACAATAAGGTAATCTCCGTAGGTGATCTGAGAGGGGTTGCTAGGCTTGTGATCTGTGCTGGTCCTGCGGAGTTTATTGAAGAAGCGTTTAAGAGAAGTAAAGAGTATACACAAGGGCTCGTGGAGAGAGGTGTGGTTGTGGTGGCTTATGCTACGGATGGGAATTCACCGGTTTTGGAGTTTGATGAAACTGACATTGCGGATGAAGAAATGAGCCAGAGAAGGAAGAAACTGTGGCGGGTGACTCCGGTTTTTGTCCCGGAATGGGAAAAGTGGTTAAATGAGCAGAAGAAGCTTGCCAATGTTTCCTCAGACTCTCCAGTGTATTTGTCTCTGCGTTTGGATGGGCGTGTAAGGGCAAGTGGAGTGGGTTATCCTCCATGGCAAGCCTTCGTTGCACAGCTTCCTCCGGTTAAGGGAATGTGGACCGGTCTTCTTGACGGTATGGATGGTAGAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

347

Amino Acids

38.89

Weight (kDa)

9.13

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 93 - 169 7.9e-23 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AccI GTMKAC 1 cut(s) 689
AccII CGCG 1 cut(s) 521
AciI CCGC 5 cut(s) 252, 357, 650, 782, 820
AcsI RAATTY 2 cut(s) 144, 745
AdeI CACNNNGTG 1 cut(s) 243
AfiI CCNNNNNNNGG 4 cut(s) 298, 387, 847, 998
AgeI ACCGGT 2 cut(s) 751, 1010
AgsI TTSAA 3 cut(s) 235, 499, 662
AjnI CCWGG 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AluBI AGCT 3 cut(s) 107, 877, 985
AluI AGCT 3 cut(s) 107, 877, 985
Alw26I GTCTC 5 cut(s) 37, 67, 72, 312, 918
Ama87I CYCGRG 1 cut(s) 538
ApeKI GCWGC 2 cut(s) 217, 470
ApoI RAATTY 2 cut(s) 144, 745
ArsI GACNNNNNNTTYG 2 cut(s) 558, 590
AsiGI ACCGGT 2 cut(s) 751, 1010
AspLEI GCGC 1 cut(s) 523
AspS9I GGNCC 2 cut(s) 644, 1008
AsuC2I CCSGG 1 cut(s) 842
AsuHPI GGTGA 4 cut(s) 437, 617, 741, 835
AvaI CYCGRG 1 cut(s) 538
AvaII GGWCC 2 cut(s) 644, 1008
BaeGI GKGCMC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 2 cut(s) 264, 702
BauI CACGAG 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 1007
BbvI GCAGC 2 cut(s) 229, 457
BccI CCATC 3 cut(s) 734, 920, 1025
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 1 cut(s) 404
BcnI CCSGG 1 cut(s) 842
BcoDI GTCTC 5 cut(s) 37, 67, 72, 312, 918
BfaI CTAG 7 cut(s) 38, 210, 285, 387, 417, 531, 624
BisI GCNGC 3 cut(s) 218, 252, 471
BlsI GCNGC 3 cut(s) 219, 253, 472
Bme1390I CCNGG 2 cut(s) 404, 842
Bme18I GGWCC 2 cut(s) 644, 1008
BmeT110I CYCGRG 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 644, 1008
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 2 cut(s) 404, 842
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 1007
BplI GAGNNNNNCTC 2 cut(s) 156, 188
BpmI CTGGAG 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 842
BsaI GGTCTC 2 cut(s) 37, 67
BsaJI CCNNGG 2 cut(s) 402, 962
BsaWI WCCGGW 4 cut(s) 751, 829, 991, 1010
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 4 cut(s) 298, 387, 847, 998
Bse118I RCCGGY 2 cut(s) 751, 1010
Bse1I ACTGG 1 cut(s) 902
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 402, 962
BseGI GGATG 4 cut(s) 745, 790, 931, 1036
BseLI CCNNNNNNNGG 4 cut(s) 298, 387, 847, 998
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 602, 906
BseNI ACTGG 1 cut(s) 902
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 2 cut(s) 229, 457
Bsh1236I CGCG 1 cut(s) 521
BshNI GGYRCC 1 cut(s) 398
BshTI ACCGGT 2 cut(s) 751, 1010
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 6 cut(s) 413, 752, 830, 842, 992, 1011
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 4 cut(s) 298, 387, 847, 998
BsmAI GTCTC 5 cut(s) 37, 67, 72, 312, 918
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 824
Bso31I GGTCTC 2 cut(s) 37, 67
BsoBI CYCGRG 1 cut(s) 538
Bsp1286I GDGCHC 3 cut(s) 264, 403, 702
Bsp143I GATC 5 cut(s) 317, 419, 438, 607, 633
Bsp19I CCATGG 1 cut(s) 962
BspACI CCGC 5 cut(s) 252, 357, 650, 782, 820
BspCNI CTCAG 2 cut(s) 603, 905
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 1 cut(s) 400
BspT107I GGYRCC 1 cut(s) 398
BspTNI GGTCTC 2 cut(s) 37, 67
BsrDI GCAATG 1 cut(s) 777
BsrFI RCCGGY 2 cut(s) 751, 1010
BsrI ACTGG 1 cut(s) 902
BssAI RCCGGY 2 cut(s) 751, 1010
BssECI CCNNGG 2 cut(s) 402, 962
BssMI GATC 5 cut(s) 317, 419, 438, 607, 633
BssNAI GTATAC 1 cut(s) 690
BssSI CACGAG 1 cut(s) 701
BssT1I CCWWGG 1 cut(s) 962
Bst1107I GTATAC 1 cut(s) 690
Bst2BI CACGAG 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 3 cut(s) 241, 816, 1025
Bst6I CTCTTC 2 cut(s) 540, 573
BstC8I GCNNGC 3 cut(s) 355, 879, 969
BstDEI CTNAG 2 cut(s) 611, 892
BstDSI CCRYGG 1 cut(s) 962
BstF5I GGATG 4 cut(s) 745, 790, 931, 1036
BstFNI CGCG 1 cut(s) 521
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 5 cut(s) 320, 422, 441, 610, 636
BstMAI GTCTC 5 cut(s) 37, 67, 72, 312, 918
BstMBI GATC 5 cut(s) 317, 419, 438, 607, 633
BstMWI GCNNNNNNNGC 6 cut(s) 350, 413, 527, 647, 874, 977
BstNI CCWGG 1 cut(s) 404
BstSCI CCNGG 2 cut(s) 402, 840
BstSLI GKGCMC 1 cut(s) 403
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 229, 457
BstV2I GAAGAC 1 cut(s) 1007
BstZ17I GTATAC 1 cut(s) 690
BtgI CCRYGG 1 cut(s) 962
BtsCI GGATG 4 cut(s) 745, 790, 931, 1036
BtsIMutI CAGTG 2 cut(s) 280, 909
Cac8I GCNNGC 3 cut(s) 355, 879, 969
CfoI GCGC 1 cut(s) 523
Cfr10I RCCGGY 2 cut(s) 751, 1010
Cfr13I GGNCC 2 cut(s) 644, 1008
CspAI ACCGGT 2 cut(s) 751, 1010
CspCI CAANNNNNGTGG 2 cut(s) 930, 965
CviAII CATG 1 cut(s) 963
DdeI CTNAG 2 cut(s) 611, 892
DpnI GATC 5 cut(s) 319, 421, 440, 609, 635
DpnII GATC 5 cut(s) 317, 419, 438, 607, 633
DraIII CACNNNGTG 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 540, 573
EarI CTCTTC 2 cut(s) 540, 573
Eco130I CCWWGG 1 cut(s) 962
Eco24I GRGCYC 2 cut(s) 264, 702
Eco31I GGTCTC 2 cut(s) 37, 67
Eco47I GGWCC 2 cut(s) 644, 1008
Eco88I CYCGRG 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 962
EcoT38I GRGCYC 2 cut(s) 264, 702
ErhI CCWWGG 1 cut(s) 962
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 1 cut(s) 966
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FaqI GGGAC 1 cut(s) 824
FatI CATG 1 cut(s) 962
FauI CCCGC 1 cut(s) 813
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 3 cut(s) 218, 252, 471
FokI GGATG 3 cut(s) 752, 797, 938
FriOI GRGCYC 2 cut(s) 264, 702
Fsp4HI GCNGC 3 cut(s) 218, 252, 471
FspBI CTAG 7 cut(s) 38, 210, 285, 387, 417, 531, 624
GlaI GCGC 1 cut(s) 522
GluI GCNGC 3 cut(s) 218, 252, 471
GsuI CTGGAG 1 cut(s) 885
HapII CCGG 6 cut(s) 413, 752, 830, 842, 992, 1011
HhaI GCGC 1 cut(s) 523
Hin1II CATG 1 cut(s) 966
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 9 cut(s) 34, 125, 171, 288, 409, 550, 573, 826, 896
HpaII CCGG 6 cut(s) 413, 752, 830, 842, 992, 1011
HphI GGTGA 4 cut(s) 437, 617, 741, 835
Hpy166II GTNNAC 4 cut(s) 101, 460, 690, 1008
Hpy188I TCNGA 5 cut(s) 13, 268, 317, 612, 895
Hpy188III TCNNGA 3 cut(s) 434, 538, 1019
Hpy8I GTNNAC 4 cut(s) 101, 460, 690, 1008
HpyAV CCTTC 2 cut(s) 798, 982
HpyCH4III ACNGT 3 cut(s) 241, 816, 1025
HpyCH4V TGCA 2 cut(s) 29, 980
HpyF10VI GCNNNNNNNGC 6 cut(s) 350, 413, 527, 647, 874, 977
HpyF3I CTNAG 2 cut(s) 611, 892
Hsp92II CATG 1 cut(s) 966
HspAI GCGC 1 cut(s) 521
Kzo9I GATC 5 cut(s) 317, 419, 438, 607, 633
Lsp1109I GCAGC 2 cut(s) 229, 457
LweI GCATC 1 cut(s) 271
MaeI CTAG 7 cut(s) 38, 210, 285, 387, 417, 531, 624
MaeIII GTNAC 1 cut(s) 823
MalI GATC 5 cut(s) 319, 421, 440, 609, 635
MboI GATC 5 cut(s) 317, 419, 438, 607, 633
MboII GAAGA 8 cut(s) 325, 557, 590, 674, 800, 820, 883, 1007
MhlI GDGCHC 3 cut(s) 264, 403, 702
MluCI AATT 2 cut(s) 144, 745
MlyI GAGTC 4 cut(s) 165, 582, 820, 890
MseI TTAA 4 cut(s) 444, 672, 860, 996
MspI CCGG 6 cut(s) 413, 752, 830, 842, 992, 1011
MspR9I CCNGG 2 cut(s) 404, 842
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 6 cut(s) 350, 413, 527, 647, 874, 977
NciI CCSGG 1 cut(s) 842
NcoI CCATGG 1 cut(s) 962
NdeII GATC 5 cut(s) 317, 419, 438, 607, 633
NlaIII CATG 1 cut(s) 966
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 823
PaeR7I CTCGAG 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 5 cut(s) 34, 125, 288, 409, 550
PfoI TCCNGGA 1 cut(s) 840
PinAI ACCGGT 2 cut(s) 751, 1010
PkrI GCNGC 3 cut(s) 219, 253, 472
PleI GAGTC 4 cut(s) 165, 581, 820, 890
PpsI GAGTC 4 cut(s) 165, 581, 820, 890
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 2 cut(s) 644, 1008
SaqAI TTAA 4 cut(s) 444, 672, 860, 996
SatI GCNGC 3 cut(s) 218, 252, 471
Sau3AI GATC 5 cut(s) 317, 419, 438, 607, 633
Sau96I GGNCC 2 cut(s) 644, 1008
SchI GAGTC 4 cut(s) 165, 582, 820, 890
ScrFI CCNGG 2 cut(s) 404, 842
SduI GDGCHC 3 cut(s) 264, 403, 702
SfaNI GCATC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 538
SinI GGWCC 2 cut(s) 644, 1008
SlaI CTCGAG 1 cut(s) 538
SmlI CTYRAG 2 cut(s) 434, 538
SmoI CTYRAG 2 cut(s) 434, 538
Sse9I AATT 2 cut(s) 144, 745
SsiI CCGC 5 cut(s) 252, 357, 650, 782, 820
SspMI CTAG 7 cut(s) 38, 210, 285, 387, 417, 531, 624
StyD4I CCNGG 2 cut(s) 402, 840
StyI CCWWGG 1 cut(s) 962
TaaI ACNGT 3 cut(s) 241, 816, 1025
TaqI TCGA 3 cut(s) 174, 539, 576
TasI AATT 2 cut(s) 144, 745
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 5 cut(s) 34, 125, 288, 409, 550
Tru1I TTAA 4 cut(s) 444, 672, 860, 996
Tru9I TTAA 4 cut(s) 444, 672, 860, 996
TscAI CASTG 2 cut(s) 280, 909
TseFI GTSAC 1 cut(s) 823
TseI GCWGC 2 cut(s) 217, 470
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 3 cut(s) 351, 783, 801
TspGWI ACGGA 5 cut(s) 281, 300, 314, 589, 752
TspRI CASTG 2 cut(s) 280, 909
VpaK11BI GGWCC 2 cut(s) 644, 1008
XapI RAATTY 2 cut(s) 144, 745
XhoI CTCGAG 1 cut(s) 538
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 7 cut(s) 38, 210, 285, 387, 417, 531, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.