Rw6G024740

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011140
Physical Location & Seq
Reverse (-)
47892626 .. 47894765
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024740.1

Sequence Viewer

Length: 894 bp
ATGTGTTGGGTTGTGAGAGGTGGCAGTATTGTGATCATCCAAATATGTCCTTCCCAGAAAACAGTGACAAACTTTAACAGCAAGCACCTCAGTCTGGAGCTTTGTTTGGCCATGGCTTCTGTGGCAAACGCTCCCTTAAACCTTCTTAAACCTCTCATCCTTCCTCGTTACAAACCCGGCATCGGCAGTGGTTTTGTAACGACGCCGTCACGTTCTACCATCAATGCACCATTCCTCACAGCTCAGGGCTCAAAGCAAAGCTCTTCACCCATCATCTGCTTTGCTTCAGAGAAGCAAAATTCCTCTACTGATGCTAGTTCCACGGCCAGGATTAGGAGTGAAGTTCTCACTCCCTTTCGCTCCGTTCGGATGTTTTTCTATCTTGCTTTCATTGCAAGTGGTGGTTTAGGAACACTGATAGCAACCACACAATTGATTGCAGCACTAACAAACCCATCAAGAGCACTTGATGCCCCTGAAATTGCAAAGGGTCTCGGCATAGACATTTGCGCGGTGTCTCTCTTTGCATTCTTGTATTATAGGGAGAACACTGCTAAGAATGCGCAGATTGCTAGGCTGTCAAGAGAGGAGAACCTTTCGAATCTTAAGCTCCGTGTGGATGAAAAGAGGGTCATTCCTGTCAGCTCTTTGAGAGGGTTTGCTAGGCTTGTGATATGTGCTGGCCCTGCATCGTTCATCACTGAGTCATTTAAGTTCAGCGAGCCTTTCACTGAAGGGCTTGTGGAAAGAGGAGTGTTGGTGGTGCCCTTTGCTACGGATGGTAATTCACCAAGTTTTGAGTTTGATGAAAGTGAAGAGTCTAAGGATTTTACTTCAAAGAGAAAGAGACTCTGGCAGCTGAATCCAGTTATTGTTAGTGAATGGACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

297

Amino Acids

32.45

Weight (kDa)

9.39

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 106 - 183 1.2e-24 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 763
AccII CGCG 1 cut(s) 512
AciI CCGC 1 cut(s) 512
AcoI YGGCCR 2 cut(s) 108, 324
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 2 cut(s) 270, 753
AcyI GRCGYC 1 cut(s) 203
AfiI CCNNNNNNNGG 4 cut(s) 94, 182, 327, 333
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 1 cut(s) 837
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 6 cut(s) 100, 242, 261, 610, 645, 859
AluI AGCT 6 cut(s) 100, 242, 261, 610, 645, 859
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 3 cut(s) 497, 522, 841
AoxI GGCC 3 cut(s) 108, 324, 682
ApeKI GCWGC 2 cut(s) 440, 856
ApoI RAATTY 1 cut(s) 298
AspLEI GCGC 2 cut(s) 512, 565
AspS9I GGNCC 2 cut(s) 683, 885
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 258, 780
AsuII TTCGAA 1 cut(s) 599
AvaII GGWCC 1 cut(s) 885
BaeGI GKGCMC 1 cut(s) 768
BalI TGGCCA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 452, 868
BccI CCATC 4 cut(s) 227, 278, 463, 773
BceAI ACGGC 2 cut(s) 190, 339
BciT130I CCWGG 1 cut(s) 328
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 3 cut(s) 497, 522, 841
BfaI CTAG 3 cut(s) 315, 573, 663
BfrI CTTAAG 1 cut(s) 605
BisI GCNGC 2 cut(s) 441, 857
BlsI GCNGC 2 cut(s) 442, 858
Bme1390I CCNGG 2 cut(s) 177, 328
Bme18I GGWCC 1 cut(s) 885
BmgT120I GGNCC 2 cut(s) 683, 885
BmiI GGNNCC 1 cut(s) 765
BmrFI CCNGG 2 cut(s) 177, 328
BmsI GCATC 4 cut(s) 189, 301, 460, 698
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 599
BpuMI CCSGG 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 2 cut(s) 111, 321
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 182, 327, 333
Bse1I ACTGG 1 cut(s) 866
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 111, 321
BseGI GGATG 5 cut(s) 36, 156, 375, 625, 784
BseLI CCNNNNNNNGG 4 cut(s) 94, 182, 327, 333
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 3 cut(s) 103, 257, 693
BseNI ACTGG 1 cut(s) 866
BseRI GAGGAG 2 cut(s) 602, 765
BseSI GKGCMC 1 cut(s) 768
BseXI GCAGC 2 cut(s) 452, 868
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 3 cut(s) 110, 326, 684
BshNI GGYRCC 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 4 cut(s) 94, 182, 327, 333
BsmAI GTCTC 3 cut(s) 497, 522, 841
BsmI GAATGC 2 cut(s) 527, 565
BsnI GGCC 3 cut(s) 110, 326, 684
Bso31I GGTCTC 1 cut(s) 497
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 3 cut(s) 251, 466, 768
Bsp143I GATC 1 cut(s) 33
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 512
BspANI GGCC 3 cut(s) 110, 326, 684
BspCNI CTCAG 3 cut(s) 102, 256, 694
BspFNI CGCG 1 cut(s) 512
BspLI GGNNCC 1 cut(s) 765
BspQI GCTCTTC 1 cut(s) 268
BspT104I TTCGAA 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 763
BspTI CTTAAG 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 1 cut(s) 866
BssECI CCNNGG 2 cut(s) 111, 321
BssMI GATC 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 2 cut(s) 268, 810
BstACI GRCGYC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 605
BstAPI GCANNNNNTGC 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 83, 682, 722
BstDEI CTNAG 5 cut(s) 89, 243, 555, 702, 822
BstDSI CCRYGG 2 cut(s) 111, 321
BstF5I GGATG 5 cut(s) 36, 156, 375, 625, 784
BstFNI CGCG 1 cut(s) 512
BstHHI GCGC 2 cut(s) 512, 565
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 3 cut(s) 497, 522, 841
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 6 cut(s) 122, 392, 470, 560, 569, 686
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 2 cut(s) 175, 326
BstSLI GKGCMC 1 cut(s) 768
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 452, 868
BsuRI GGCC 3 cut(s) 110, 326, 684
BtgI CCRYGG 2 cut(s) 111, 321
BtsCI GGATG 5 cut(s) 36, 156, 375, 625, 784
BtsI GCAGTG 2 cut(s) 193, 549
BtsIMutI CAGTG 6 cut(s) 69, 193, 413, 549, 699, 729
Cac8I GCNNGC 3 cut(s) 83, 682, 722
CfoI GCGC 2 cut(s) 512, 565
Cfr13I GGNCC 2 cut(s) 683, 885
CseI GACGC 1 cut(s) 211
CviAII CATG 1 cut(s) 112
DdeI CTNAG 5 cut(s) 89, 243, 555, 702, 822
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 2 cut(s) 108, 324
Eam1104I CTCTTC 2 cut(s) 268, 810
EarI CTCTTC 2 cut(s) 268, 810
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 885
Eco57I CTGAAG 2 cut(s) 270, 753
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 115
FaiI YATR 5 cut(s) 46, 113, 500, 540, 676
FatI CATG 1 cut(s) 111
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 441, 857
FokI GGATG 5 cut(s) 23, 143, 382, 632, 791
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 441, 857
FspBI CTAG 3 cut(s) 315, 573, 663
FspI TGCGCA 1 cut(s) 564
GlaI GCGC 2 cut(s) 511, 564
GluI GCNGC 2 cut(s) 441, 857
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 3 cut(s) 110, 326, 684
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 211
HhaI GCGC 2 cut(s) 512, 565
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 2 cut(s) 510, 563
HinP1I GCGC 2 cut(s) 510, 563
HinfI GANTC 5 cut(s) 601, 704, 818, 849, 862
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 258, 780
Hpy188I TCNGA 2 cut(s) 289, 369
Hpy188III TCNNGA 3 cut(s) 95, 459, 582
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 4 cut(s) 60, 152, 170, 728
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 6 cut(s) 227, 395, 440, 485, 527, 689
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 392, 470, 560, 569, 686
HpyF3I CTNAG 5 cut(s) 89, 243, 555, 702, 822
HpySE526I ACGT 1 cut(s) 211
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 2 cut(s) 510, 563
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 1 cut(s) 33
LguI GCTCTTC 1 cut(s) 268
LmnI GCTCC 4 cut(s) 97, 136, 365, 615
Lsp1109I GCAGC 2 cut(s) 452, 868
LweI GCATC 4 cut(s) 189, 301, 460, 698
MaeI CTAG 3 cut(s) 315, 573, 663
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 4 cut(s) 64, 167, 196, 207
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 2 cut(s) 255, 827
MfeI CAATTG 1 cut(s) 431
MhlI GDGCHC 3 cut(s) 251, 466, 768
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 4 cut(s) 298, 431, 480, 784
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 3 cut(s) 713, 827, 843
Mox20I TGGCCA 1 cut(s) 110
MscI TGGCCA 1 cut(s) 110
MseI TTAA 5 cut(s) 75, 137, 147, 606, 711
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 859
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 177, 328
MunI CAATTG 1 cut(s) 431
Mva1269I GAATGC 2 cut(s) 527, 565
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 6 cut(s) 122, 392, 470, 560, 569, 686
NciI CCSGG 1 cut(s) 177
NcoI CCATGG 1 cut(s) 111
NdeII GATC 1 cut(s) 33
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 765
NmeAIII GCCGAG 1 cut(s) 474
NmuCI GTSAC 2 cut(s) 64, 207
NsbI TGCGCA 1 cut(s) 564
NspV TTCGAA 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 268
PctI GAATGC 2 cut(s) 527, 565
PfeI GAWTC 2 cut(s) 601, 862
PflFI GACNNNGTC 1 cut(s) 205
PkrI GCNGC 2 cut(s) 442, 858
PleI GAGTC 3 cut(s) 712, 826, 843
PpsI GAGTC 3 cut(s) 712, 826, 843
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 765
PspPI GGNCC 2 cut(s) 683, 885
PsyI GACNNNGTC 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 859
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 5 cut(s) 75, 137, 147, 606, 711
SatI GCNGC 2 cut(s) 441, 857
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 2 cut(s) 683, 885
SchI GAGTC 3 cut(s) 713, 827, 843
ScrFI CCNGG 2 cut(s) 177, 328
SduI GDGCHC 3 cut(s) 251, 466, 768
SfaNI GCATC 4 cut(s) 189, 301, 460, 698
SfuI TTCGAA 1 cut(s) 599
SinI GGWCC 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 4 cut(s) 298, 431, 480, 784
SsiI CCGC 1 cut(s) 512
SspMI CTAG 3 cut(s) 315, 573, 663
StyD4I CCNGG 2 cut(s) 175, 326
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 599
TasI AATT 4 cut(s) 298, 431, 480, 784
TfiI GAWTC 2 cut(s) 601, 862
Tru1I TTAA 5 cut(s) 75, 137, 147, 606, 711
Tru9I TTAA 5 cut(s) 75, 137, 147, 606, 711
TscAI CASTG 6 cut(s) 69, 193, 420, 556, 706, 736
TseFI GTSAC 2 cut(s) 64, 207
TseI GCWGC 2 cut(s) 440, 856
Tsp45I GTSAC 2 cut(s) 64, 207
TspDTI ATGAA 4 cut(s) 379, 636, 685, 822
TspGWI ACGGA 3 cut(s) 352, 602, 791
TspRI CASTG 6 cut(s) 69, 193, 420, 556, 706, 736
Tth111I GACNNNGTC 1 cut(s) 205
Vha464I CTTAAG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 885
XapI RAATTY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 3 cut(s) 315, 573, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.