Prupe.8G210100_v2.0.a1

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011140
Physical Location & Seq
Reverse (-)
19490102 .. 19492063
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G210100.1

Sequence Viewer

Length: 966 bp
ATGGCTTCTGTGGCAAACGGTCCCTTCCACATTCTCAAACCTCCAAACCATCCTGGTTACAAACTCAGTAGTGGTATCAGAACGACCCTCTGGTCATTCTCATGTACCAATGCACCATTTCTCACTCTGCAGACCTCAAAGCACAAGTCTTCAACCATCATTTGCTTTGCAACTGATAAGCAAACTTCTTCTACTGAAATCAGTTCCACAGCCAGGATTAGGAGTGAAGTTCTCACTCCCTTTCGCTCCGTTCGGATGTTTTTCTATCTTGCTTTCATTGCAAGTGGTGGTTTAGGAGGACTCATAGCAACCACACAGTTAATTGCAGCACTAACAAACCCATCAAGAGCACTTGACGCCCCTGAAATTGCGAAGGGTCTTGGGATAGACCTTGGAGCAGTGTCTCTCTTTGCATTCTTGTATTTGAGAGAGAACAAGGCCAAGAATGCACAGATTGCTAGGCTCTCAAGAGAGGAAAACCTTTCGAATCTTAAGCTCCGGGTTGATGAAAAGAAGGTCATTCCTCTTAGCTCTTTGAGAGGGATTGCTCGGCTTGTAATATGTGCAGGCCCTGCATCAGTCATCACAGAAGCTTTTAATCAAAGTGAACCCTACACTGAAAGGCTTGTGGAACGAGGGGTGCTCGCGGTGCCCTTTCCTACAGATGGAAACTTACCTAGTTTTGAGTTTGAAGAAAGTGAAGAGACTAAGGAGATTACTGCAAAGAGGAAAAGACTATGGCAGCTGACACCAATTTATGTTCCTGAATGGACCAAGTGGTTAGATGAGCAAAAGAAGCTGGCAGGCGTCTCCTCTGACTCTCCTGTGTATATATCTCTTCGCCTGGATGGTCGTGTTCGTGGCAGTGGCATTGGTTACCCGCCTTGGAATGCTTTTGTTGCACAGCTACCACCTGTAAAGGGAATGTGGTCTGGTCTTCTTGATGGGTTTGATGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

322

Amino Acids

35.28

Weight (kDa)

9.47

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 649
AccII CGCG 1 cut(s) 647
AciI CCGC 2 cut(s) 647, 881
AcyI GRCGYC 2 cut(s) 357, 807
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 4 cut(s) 213, 219, 665, 920
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 2 cut(s) 153, 692
AjnI CCWGG 3 cut(s) 52, 212, 843
AluBI AGCT 6 cut(s) 496, 531, 593, 745, 799, 907
AluI AGCT 6 cut(s) 496, 531, 593, 745, 799, 907
Alw21I GWGCWC 2 cut(s) 352, 645
Alw26I GTCTC 3 cut(s) 408, 698, 814
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 2 cut(s) 438, 568
ApeKI GCWGC 2 cut(s) 326, 742
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspS9I GGNCC 3 cut(s) 20, 569, 771
AsuC2I CCSGG 1 cut(s) 500
AsuII TTCGAA 1 cut(s) 485
AvaII GGWCC 2 cut(s) 20, 771
BaeGI GKGCMC 1 cut(s) 654
BanI GGYRCC 1 cut(s) 649
BbsI GAAGAC 2 cut(s) 141, 929
Bbv12I GWGCWC 2 cut(s) 352, 645
BbvI GCAGC 2 cut(s) 338, 754
BccI CCATC 7 cut(s) 57, 164, 349, 659, 842, 938, 947
BciT130I CCWGG 3 cut(s) 54, 214, 845
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 3 cut(s) 408, 698, 814
BfaI CTAG 2 cut(s) 459, 678
BfmI CTRYAG 2 cut(s) 128, 660
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 2 cut(s) 327, 743
BlsI GCNGC 2 cut(s) 328, 744
Bme1390I CCNGG 4 cut(s) 54, 214, 500, 845
Bme18I GGWCC 2 cut(s) 20, 771
BmgT120I GGNCC 3 cut(s) 20, 569, 771
BmiI GGNNCC 2 cut(s) 22, 651
BmrFI CCNGG 4 cut(s) 54, 214, 500, 845
BmsI GCATC 1 cut(s) 584
BpiI GAAGAC 2 cut(s) 141, 929
BplI GAGNNNNNCTC 2 cut(s) 627, 659
Bpu14I TTCGAA 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 451
BpuMI CCSGG 1 cut(s) 500
BsaHI GRCGYC 2 cut(s) 357, 807
BsaJI CCNNGG 2 cut(s) 391, 884
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 219, 665, 920
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 3 cut(s) 54, 214, 845
BseDI CCNNGG 2 cut(s) 391, 884
BseGI GGATG 3 cut(s) 49, 261, 853
BseLI CCNNNNNNNGG 4 cut(s) 213, 219, 665, 920
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 802
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 2 cut(s) 338, 754
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 1 cut(s) 647
BshFI GGCC 2 cut(s) 440, 570
BshNI GGYRCC 1 cut(s) 649
BsiHKAI GWGCWC 2 cut(s) 352, 645
BsiSI CCGG 1 cut(s) 499
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 4 cut(s) 213, 219, 665, 920
BsmAI GTCTC 3 cut(s) 408, 698, 814
BsmBI CGTCTC 1 cut(s) 814
BsmFI GGGAC 1 cut(s) 6
BsmI GAATGC 3 cut(s) 413, 451, 895
BsnI GGCC 2 cut(s) 440, 570
Bsp119I TTCGAA 1 cut(s) 485
Bsp1286I GDGCHC 3 cut(s) 352, 645, 654
BspACI CCGC 2 cut(s) 647, 881
BspANI GGCC 2 cut(s) 440, 570
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 647
BspLI GGNNCC 2 cut(s) 22, 651
BspMAI CTGCAG 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 649
BspTI CTTAAG 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 391, 884
BssNI GRCGYC 2 cut(s) 357, 807
BssT1I CCWWGG 2 cut(s) 391, 884
Bst2UI CCWGG 3 cut(s) 54, 214, 845
Bst4CI ACNGT 2 cut(s) 20, 318
Bst6I CTCTTC 3 cut(s) 696, 843, 952
BstACI GRCGYC 2 cut(s) 357, 807
BstAFI CTTAAG 1 cut(s) 491
BstAPI GCANNNNNTGC 2 cut(s) 455, 572
BstBI TTCGAA 1 cut(s) 485
BstC8I GCNNGC 4 cut(s) 568, 645, 801, 805
BstDEI CTNAG 3 cut(s) 65, 527, 708
BstEII GGTNACC 1 cut(s) 875
BstF5I GGATG 3 cut(s) 49, 261, 853
BstFNI CGCG 1 cut(s) 647
BstMAI GTCTC 3 cut(s) 408, 698, 814
BstMWI GCNNNNNNNGC 9 cut(s) 11, 278, 356, 446, 455, 572, 649, 796, 899
BstNI CCWGG 3 cut(s) 54, 214, 845
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 4 cut(s) 52, 212, 498, 843
BstSFI CTRYAG 2 cut(s) 128, 660
BstSLI GKGCMC 1 cut(s) 654
BstUI CGCG 1 cut(s) 647
BstV1I GCAGC 2 cut(s) 338, 754
BstV2I GAAGAC 2 cut(s) 141, 929
BsuRI GGCC 2 cut(s) 440, 570
BtsCI GGATG 3 cut(s) 49, 261, 853
BtsI GCAGTG 2 cut(s) 405, 871
BtsIMutI CAGTG 3 cut(s) 405, 615, 871
Cac8I GCNNGC 4 cut(s) 568, 645, 801, 805
CaiI CAGNNNCTG 1 cut(s) 572
Cfr13I GGNCC 3 cut(s) 20, 569, 771
CseI GACGC 2 cut(s) 365, 796
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 102
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 3 cut(s) 65, 527, 708
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 3 cut(s) 696, 843, 952
EarI CTCTTC 3 cut(s) 696, 843, 952
Eco130I CCWWGG 2 cut(s) 391, 884
Eco47I GGWCC 2 cut(s) 20, 771
Eco91I GGTNACC 1 cut(s) 875
EcoO109I RGGNCCY 1 cut(s) 569
EcoO65I GGTNACC 1 cut(s) 875
EcoRII CCWGG 3 cut(s) 52, 212, 843
EcoT14I CCWWGG 2 cut(s) 391, 884
ErhI CCWWGG 2 cut(s) 391, 884
Esp3I CGTCTC 1 cut(s) 814
FaeI CATG 1 cut(s) 105
FaiI YATR 7 cut(s) 103, 305, 562, 739, 759, 831, 833
FaqI GGGAC 1 cut(s) 6
FatI CATG 1 cut(s) 101
FauI CCCGC 1 cut(s) 888
Fnu4HI GCNGC 2 cut(s) 327, 743
FokI GGATG 3 cut(s) 36, 268, 860
Fsp4HI GCNGC 2 cut(s) 327, 743
FspBI CTAG 2 cut(s) 459, 678
GluI GCNGC 2 cut(s) 327, 743
HaeIII GGCC 2 cut(s) 440, 570
HapII CCGG 1 cut(s) 499
HgaI GACGC 2 cut(s) 365, 796
Hin1I GRCGYC 2 cut(s) 357, 807
Hin1II CATG 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 591
HinfI GANTC 3 cut(s) 300, 487, 818
HpaII CCGG 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 608
Hpy188I TCNGA 3 cut(s) 80, 255, 817
Hpy188III TCNNGA 4 cut(s) 345, 468, 764, 941
Hpy8I GTNNAC 1 cut(s) 608
HpyAV CCTTC 3 cut(s) 34, 367, 508
HpyCH4III ACNGT 2 cut(s) 20, 318
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 278, 356, 446, 455, 572, 649, 796, 899
HpyF3I CTNAG 3 cut(s) 65, 527, 708
Hsp92I GRCGYC 2 cut(s) 357, 807
Hsp92II CATG 1 cut(s) 105
LmnI GCTCC 3 cut(s) 251, 395, 501
Lsp1109I GCAGC 2 cut(s) 338, 754
LweI GCATC 1 cut(s) 584
MaeI CTAG 2 cut(s) 459, 678
MaeIII GTNAC 2 cut(s) 56, 875
MboII GAAGA 6 cut(s) 141, 180, 704, 713, 830, 929
MhlI GDGCHC 3 cut(s) 352, 645, 654
MluCI AATT 3 cut(s) 321, 366, 753
MlyI GAGTC 2 cut(s) 294, 812
MseI TTAA 4 cut(s) 320, 492, 597, 964
MslI CAYNNNNRTG 1 cut(s) 100
MspA1I CMGCKG 1 cut(s) 745
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 1 cut(s) 499
MspR9I CCNGG 4 cut(s) 54, 214, 500, 845
Mva1269I GAATGC 3 cut(s) 413, 451, 895
MvaI CCWGG 3 cut(s) 54, 214, 845
MvnI CGCG 1 cut(s) 647
MwoI GCNNNNNNNGC 9 cut(s) 11, 278, 356, 446, 455, 572, 649, 796, 899
NciI CCSGG 1 cut(s) 500
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 2 cut(s) 22, 651
NmeAIII GCCGAG 1 cut(s) 529
NspV TTCGAA 1 cut(s) 485
PctI GAATGC 3 cut(s) 413, 451, 895
PfeI GAWTC 1 cut(s) 487
PkrI GCNGC 2 cut(s) 328, 744
PleI GAGTC 2 cut(s) 294, 812
PpsI GAGTC 2 cut(s) 294, 812
Psp6I CCWGG 3 cut(s) 52, 212, 843
PspEI GGTNACC 1 cut(s) 875
PspGI CCWGG 3 cut(s) 52, 212, 843
PspN4I GGNNCC 2 cut(s) 22, 651
PspPI GGNCC 3 cut(s) 20, 569, 771
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 745
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 100
SaqAI TTAA 4 cut(s) 320, 492, 597, 964
SatI GCNGC 2 cut(s) 327, 743
Sau96I GGNCC 3 cut(s) 20, 569, 771
SchI GAGTC 2 cut(s) 294, 812
ScrFI CCNGG 4 cut(s) 54, 214, 500, 845
SduI GDGCHC 3 cut(s) 352, 645, 654
SfaNI GCATC 1 cut(s) 584
SfcI CTRYAG 2 cut(s) 128, 660
SfuI TTCGAA 1 cut(s) 485
SinI GGWCC 2 cut(s) 20, 771
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 2 cut(s) 466, 491
SmoI CTYRAG 2 cut(s) 466, 491
Sse9I AATT 3 cut(s) 321, 366, 753
SsiI CCGC 2 cut(s) 647, 881
SspMI CTAG 2 cut(s) 459, 678
StyD4I CCNGG 4 cut(s) 52, 212, 498, 843
StyI CCWWGG 2 cut(s) 391, 884
TaaI ACNGT 2 cut(s) 20, 318
TaqI TCGA 1 cut(s) 485
TasI AATT 3 cut(s) 321, 366, 753
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 4 cut(s) 320, 492, 597, 964
Tru9I TTAA 4 cut(s) 320, 492, 597, 964
TscAI CASTG 3 cut(s) 405, 622, 871
TseI GCWGC 2 cut(s) 326, 742
TspDTI ATGAA 2 cut(s) 265, 522
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 3 cut(s) 405, 622, 871
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 20, 771
XspI CTAG 2 cut(s) 459, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.