pycom05g16900

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011140
Physical Location & Seq
Reverse (-)
20177229 .. 20178107
879 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16900.2

Sequence Viewer

Length: 594 bp
ATGCCACCGAAATTGCCAAGGGTCTTGGCAGACCTTGGAGCAGTGTCTCTCTTTGCATTTTTGTATTTGAGGGAGAACAAGGCCAAAGATGCACAGATTGCTAGGCTCTCTCGAGAGGAAAACCTTTCGAATCTTAAGCTTCGTGTTTCTGAAAAGAAAGTCATTCCTCTTAGCTCTTTGAGAGGGATTGCTCAGCTGGTAATATGTGCAGGCCCTGCATCGTTCATCACAGAATCCTTCAATCGAAGTGAGCTTTTCACTGAAGGGCTTGTGGAAGGAGGAGTGCTCGTTGTGCCCTTGGCTACGGATGGAAACGTACCTAGTTTTGAGTTTGAAGAAAGTGAAGAGGCTAAGAATATTACTGCAAAGAGGAAAGGACTCTGGCAGCTGACTCCAATTTATGTTACTGAATGGACCAACTGGTTGGACGAACAAAAGAAGCTGGCCGGTGTCACCTCTGACTCTCTCGTTCGCGTTGGTTACCCACCTTGGAATGCTTTCGTTGCGCAGTTACCACCTGTAAAGGCAATGTGGTCTGGTCTCCTCGACGGGTTTGATGGAAGAGTTTTAAGAAAATATTTTTCGTTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

198

Amino Acids

21.94

Weight (kDa)

8.64

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 507
AccII CGCG 1 cut(s) 474
AcoI YGGCCR 1 cut(s) 444
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 318
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 241, 335
AluBI AGCT 6 cut(s) 139, 174, 196, 253, 388, 442
AluI AGCT 6 cut(s) 139, 174, 196, 253, 388, 442
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 51, 545
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 3 cut(s) 81, 211, 444
ApeKI GCWGC 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 2 cut(s) 212, 414
AsuHPI GGTGA 1 cut(s) 445
AsuII TTCGAA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 302, 551
BcoDI GTCTC 2 cut(s) 51, 545
BfaI CTAG 2 cut(s) 102, 321
BfrI CTTAAG 1 cut(s) 134
BisI GCNGC 1 cut(s) 386
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 387
Bme18I GGWCC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 212, 414
BmsI GCATC 2 cut(s) 79, 227
BplI GAGNNNNNCTC 2 cut(s) 270, 302
Bpu1102I GCTNAGC 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 4 cut(s) 17, 34, 297, 488
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 534
BseDI CCNNGG 4 cut(s) 17, 34, 297, 488
BseGI GGATG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 2 cut(s) 294, 533
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 3 cut(s) 83, 213, 446
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 447
BsmAI GTCTC 2 cut(s) 51, 545
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 3 cut(s) 83, 213, 446
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 111
Bsp119I TTCGAA 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 288, 297
Bsp1720I GCTNAGC 1 cut(s) 192
BspANI GGCC 3 cut(s) 83, 213, 446
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 474
BspT104I TTCGAA 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 4 cut(s) 17, 34, 297, 488
BssT1I CCWWGG 4 cut(s) 17, 34, 297, 488
Bst6I CTCTTC 2 cut(s) 339, 556
BstAFI CTTAAG 1 cut(s) 134
BstAPI GCANNNNNTGC 2 cut(s) 98, 215
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 211, 444
BstDEI CTNAG 3 cut(s) 170, 192, 351
BstEII GGTNACC 1 cut(s) 479
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 474
BstHHI GCGC 1 cut(s) 508
BstMAI GTCTC 2 cut(s) 51, 545
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 215, 292, 503
BstPI GGTNACC 1 cut(s) 479
BstSLI GKGCMC 1 cut(s) 297
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 424
BsuRI GGCC 3 cut(s) 83, 213, 446
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 48, 258
Cac8I GCNNGC 2 cut(s) 211, 444
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 1 cut(s) 508
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 2 cut(s) 212, 414
Csp6I GTAC 1 cut(s) 317
CspCI CAANNNNNGTGG 1 cut(s) 29
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 3 cut(s) 170, 192, 351
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 2 cut(s) 339, 556
EarI CTCTTC 2 cut(s) 339, 556
Eco130I CCWWGG 4 cut(s) 17, 34, 297, 488
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 111
Eco91I GGTNACC 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 212
EcoO65I GGTNACC 1 cut(s) 479
EcoT14I CCWWGG 4 cut(s) 17, 34, 297, 488
ErhI CCWWGG 4 cut(s) 17, 34, 297, 488
FaiI YATR 3 cut(s) 205, 402, 592
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 2 cut(s) 102, 321
FspI TGCGCA 1 cut(s) 507
GlaI GCGC 1 cut(s) 507
GluI GCNGC 1 cut(s) 386
HaeIII GGCC 3 cut(s) 83, 213, 446
HapII CCGG 1 cut(s) 447
HhaI GCGC 1 cut(s) 508
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 5 cut(s) 130, 233, 378, 391, 461
HpaII CCGG 1 cut(s) 447
HphI GGTGA 1 cut(s) 445
Hpy188I TCNGA 2 cut(s) 151, 460
Hpy188III TCNNGA 2 cut(s) 111, 113
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 3 cut(s) 247, 257, 269
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 5 cut(s) 56, 92, 209, 218, 365
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 215, 292, 503
HpyF3I CTNAG 3 cut(s) 170, 192, 351
HpySE526I ACGT 1 cut(s) 315
HspAI GCGC 1 cut(s) 506
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 9 cut(s) 182, 195, 228, 367, 406, 428, 460, 522, 531
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 2 cut(s) 79, 227
MaeI CTAG 2 cut(s) 102, 321
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 4 cut(s) 403, 451, 479, 510
MboII GAAGA 3 cut(s) 347, 356, 573
MhlI GDGCHC 2 cut(s) 288, 297
MluCI AATT 2 cut(s) 11, 396
MlyI GAGTC 3 cut(s) 372, 385, 455
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 9 cut(s) 63, 109, 176, 177, 272, 340, 363, 466, 554
MroXI GAANNNNTTC 1 cut(s) 497
MseI TTAA 2 cut(s) 135, 569
MspA1I CMGCKG 2 cut(s) 196, 388
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 499
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 215, 292, 503
NmuCI GTSAC 1 cut(s) 451
NsbI TGCGCA 1 cut(s) 507
NspV TTCGAA 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 111
PctI GAATGC 1 cut(s) 499
PdmI GAANNNNTTC 1 cut(s) 497
PfeI GAWTC 2 cut(s) 130, 233
PkrI GCNGC 1 cut(s) 387
PleI GAGTC 3 cut(s) 372, 385, 455
PpsI GAGTC 3 cut(s) 372, 385, 455
PspEI GGTNACC 1 cut(s) 479
PspPI GGNCC 2 cut(s) 212, 414
PstNI CAGNNNCTG 1 cut(s) 215
PvuII CAGCTG 2 cut(s) 196, 388
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 135, 569
SatI GCNGC 1 cut(s) 386
Sau96I GGNCC 2 cut(s) 212, 414
SchI GAGTC 3 cut(s) 372, 385, 455
SduI GDGCHC 2 cut(s) 288, 297
SfaNI GCATC 2 cut(s) 79, 227
Sfr274I CTCGAG 1 cut(s) 111
SfuI TTCGAA 1 cut(s) 128
SinI GGWCC 1 cut(s) 414
SlaI CTCGAG 1 cut(s) 111
SmlI CTYRAG 2 cut(s) 111, 134
SmoI CTYRAG 2 cut(s) 111, 134
Sse9I AATT 2 cut(s) 11, 396
SspI AATATT 2 cut(s) 358, 578
SspMI CTAG 2 cut(s) 102, 321
StyI CCWWGG 4 cut(s) 17, 34, 297, 488
TaiI ACGT 1 cut(s) 318
TaqI TCGA 4 cut(s) 112, 128, 244, 546
TasI AATT 2 cut(s) 11, 396
TfiI GAWTC 2 cut(s) 130, 233
Tru1I TTAA 2 cut(s) 135, 569
Tru9I TTAA 2 cut(s) 135, 569
TscAI CASTG 2 cut(s) 48, 265
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 48, 265
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 414
XhoI CTCGAG 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 497
XspI CTAG 2 cut(s) 102, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.