RLG00000012620

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011140
Physical Location & Seq
Forward (+)
20598357 .. 20600130
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012620

Sequence Viewer

Length: 1047 bp
ATGGCTTCTGTGGCAAACGCTCCCTTAAACCTTCTTAAACCTTTCAACCTTCCTCGTTACAAACCTGGCATCGGCAGCGGTTTGGTAACGACGCCGTTACGTTCTACCATTAATGCACCATTCCTCACAGCTCAGAGCTCAAAGCAAAGCTCTTCACCCATCATCTGCTTTGCTTCTGAGAAGCAAAATTCCTCTACTGATGCTAGGCAGGTCACACTTTGCTCTTTGGCTTGCATATTTCTTATTCAGTCCTCAACTTTCAAGAATTTATTGTTTCATTTGATTTCCACGGCCAGGATTAGGAGTGAAGTTCTCACTCCCTTTCGCTCCGTTCGGATGTTTTTCTATCTTGCTTTCATTGCAAGTGGTGGTTTAGGAACACTGATAGCAATCACACAATTGATTGCAGCACTAACAAACCCATCAAGAGCACTTGATGCCCCTGAAATTGCAAAGGGTCTCGGCATAGACATTTGCGCGGTGTCTCTCTTTGCATTCTTGTATTATAGGGAGAACACTGCCAAGAATGCGCAGATTGCTAGGCTGTCAAGAGAGGAGAACCTTTCGAATCTTAAGCTCCGGGTGGATGAAAAGAGGGTCATTCCTGTCAGCTCTTTGAGAGGGTTTGCAAGGCTTGTGATATGTGCCGGCCCTGCGTCGTTCATCACTGAGTCGTTTAAGTTCAGTGAGCCTTTCACTGAAAGGCTTGTGGAAAGAGGAGTGTTGGTGGTGCCCTTTGCTACGGATGGTAATTCACCAAGTTTTGAGTTTGATGAAAGTGAAGAGTCTAAGGATTTTACTTCAAAGAGAAAGAGACTCTGGCAGCTGAATCCAGTTATTGTTAGTGAATGGACCAATTGGTTAGATGAACAAAAGAAACTGGCTGGTGTCTCCTCTGACTCTCCTGTGTATATATCTCTACGCCTGGACGGTCGTGTTCGTGGCAGTGGCATAGGTTATCCGCCTTGGAATGCTTTTGTTGCACAGTTACCGCCTGTTAAGGGAATGTGGTCAGGTCTTCTGGATGGTTTTGATGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

349

Amino Acids

38.28

Weight (kDa)

9.49

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 97 - 172 3.6e-24 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 531
Acc36I ACCTGC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 730
AccII CGCG 1 cut(s) 479
AciI CCGC 4 cut(s) 78, 479, 962, 992
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 2 cut(s) 187, 265
AcyI GRCGYC 1 cut(s) 92
AfiI CCNNNNNNNGG 4 cut(s) 71, 294, 300, 1001
AflII CTTAAG 1 cut(s) 572
AgsI TTSAA 3 cut(s) 46, 262, 804
AjnI CCWGG 3 cut(s) 64, 293, 924
AluBI AGCT 6 cut(s) 131, 138, 150, 577, 612, 826
AluI AGCT 6 cut(s) 131, 138, 150, 577, 612, 826
Alw21I GWGCWC 2 cut(s) 140, 433
Alw26I GTCTC 4 cut(s) 464, 489, 808, 895
AoxI GGCC 2 cut(s) 291, 649
ApeKI GCWGC 3 cut(s) 75, 407, 823
ApoI RAATTY 2 cut(s) 187, 265
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 2 cut(s) 479, 532
AspS9I GGNCC 2 cut(s) 650, 852
AsuC2I CCSGG 1 cut(s) 581
AsuHPI GGTGA 2 cut(s) 147, 747
AsuII TTCGAA 1 cut(s) 566
AvaII GGWCC 1 cut(s) 852
BaeGI GKGCMC 1 cut(s) 735
BanI GGYRCC 1 cut(s) 730
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 1010
Bbv12I GWGCWC 2 cut(s) 140, 433
BbvI GCAGC 3 cut(s) 87, 419, 835
BccI CCATC 5 cut(s) 167, 430, 740, 1019, 1028
BceAI ACGGC 2 cut(s) 79, 306
BciT130I CCWGG 3 cut(s) 66, 295, 926
BcnI CCSGG 1 cut(s) 581
BcoDI GTCTC 4 cut(s) 464, 489, 808, 895
BfaI CTAG 2 cut(s) 204, 540
BfrI CTTAAG 1 cut(s) 572
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 3 cut(s) 76, 408, 824
BlsI GCNGC 3 cut(s) 77, 409, 825
Bme1390I CCNGG 4 cut(s) 66, 295, 581, 926
Bme18I GGWCC 1 cut(s) 852
BmgT120I GGNCC 2 cut(s) 650, 852
BmiI GGNNCC 1 cut(s) 732
BmrFI CCNGG 4 cut(s) 66, 295, 581, 926
BmsI GCATC 3 cut(s) 78, 190, 427
BpiI GAAGAC 1 cut(s) 1010
Bpu14I TTCGAA 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 581
BsaBI GATNNNNATC 1 cut(s) 389
BsaHI GRCGYC 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 288, 965
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 294, 300, 1001
Bse118I RCCGGY 1 cut(s) 647
Bse1I ACTGG 2 cut(s) 833, 885
Bse3DI GCAATG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 389
BseBI CCWGG 3 cut(s) 66, 295, 926
BseDI CCNNGG 2 cut(s) 288, 965
BseGI GGATG 4 cut(s) 342, 592, 751, 1030
BseJI GATNNNNATC 1 cut(s) 389
BseLI CCNNNNNNNGG 4 cut(s) 71, 294, 300, 1001
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 3 cut(s) 146, 168, 660
BseNI ACTGG 2 cut(s) 833, 885
BseRI GAGGAG 3 cut(s) 569, 732, 883
BseSI GKGCMC 1 cut(s) 735
BseXI GCAGC 3 cut(s) 87, 419, 835
Bsh1236I CGCG 1 cut(s) 479
Bsh1285I CGRYCG 1 cut(s) 934
BshFI GGCC 2 cut(s) 293, 651
BshNI GGYRCC 1 cut(s) 730
BsiEI CGRYCG 1 cut(s) 934
BsiHKAI GWGCWC 2 cut(s) 140, 433
BsiSI CCGG 2 cut(s) 580, 648
BslI CCNNNNNNNGG 4 cut(s) 71, 294, 300, 1001
BsmAI GTCTC 4 cut(s) 464, 489, 808, 895
BsmI GAATGC 3 cut(s) 494, 532, 976
BsnI GGCC 2 cut(s) 293, 651
Bso31I GGTCTC 1 cut(s) 464
Bsp119I TTCGAA 1 cut(s) 566
Bsp1286I GDGCHC 3 cut(s) 140, 433, 735
BspACI CCGC 4 cut(s) 78, 479, 962, 992
BspANI GGCC 2 cut(s) 293, 651
BspCNI CTCAG 3 cut(s) 145, 169, 661
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 1 cut(s) 732
BspMI ACCTGC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 730
BspTI CTTAAG 1 cut(s) 572
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 647
BsrI ACTGG 2 cut(s) 833, 885
BssAI RCCGGY 1 cut(s) 647
BssECI CCNNGG 2 cut(s) 288, 965
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 965
Bst2UI CCWGG 3 cut(s) 66, 295, 926
Bst4CI ACNGT 2 cut(s) 932, 987
Bst6I CTCTTC 3 cut(s) 157, 777, 1033
BstACI GRCGYC 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 566
BstC8I GCNNGC 2 cut(s) 232, 649
BstDEI CTNAG 4 cut(s) 132, 177, 669, 789
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 4 cut(s) 342, 592, 751, 1030
BstFNI CGCG 1 cut(s) 479
BstHHI GCGC 2 cut(s) 479, 532
BstMAI GTCTC 4 cut(s) 464, 489, 808, 895
BstMCI CGRYCG 1 cut(s) 934
BstMWI GCNNNNNNNGC 8 cut(s) 11, 75, 359, 437, 527, 536, 653, 980
BstNI CCWGG 3 cut(s) 66, 295, 926
BstSCI CCNGG 4 cut(s) 64, 293, 579, 924
BstSLI GKGCMC 1 cut(s) 735
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 3 cut(s) 87, 419, 835
BstV2I GAAGAC 1 cut(s) 1010
BsuRI GGCC 2 cut(s) 293, 651
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 4 cut(s) 342, 592, 751, 1030
BtsI GCAGTG 2 cut(s) 516, 952
BtsIMutI CAGTG 6 cut(s) 380, 516, 666, 691, 696, 952
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 232, 649
CfoI GCGC 2 cut(s) 479, 532
Cfr10I RCCGGY 1 cut(s) 647
Cfr13I GGNCC 2 cut(s) 650, 852
CseI GACGC 2 cut(s) 100, 645
DdeI CTNAG 4 cut(s) 132, 177, 669, 789
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 3 cut(s) 157, 777, 1033
EarI CTCTTC 3 cut(s) 157, 777, 1033
EciI GGCGGA 1 cut(s) 951
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 965
Eco24I GRGCYC 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 852
Eco53kI GAGCTC 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 64, 293, 924
EcoT14I CCWWGG 1 cut(s) 965
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 965
FaiI YATR 7 cut(s) 236, 467, 507, 643, 912, 914, 953
Fnu4HI GCNGC 3 cut(s) 76, 408, 824
FokI GGATG 4 cut(s) 349, 599, 758, 1037
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 76, 408, 824
FspBI CTAG 2 cut(s) 204, 540
FspI TGCGCA 1 cut(s) 531
GlaI GCGC 2 cut(s) 478, 531
GluI GCNGC 3 cut(s) 76, 408, 824
HaeIII GGCC 2 cut(s) 293, 651
HapII CCGG 2 cut(s) 580, 648
HgaI GACGC 2 cut(s) 100, 645
HhaI GCGC 2 cut(s) 479, 532
Hin1I GRCGYC 1 cut(s) 92
Hin6I GCGC 2 cut(s) 477, 530
HinP1I GCGC 2 cut(s) 477, 530
HinfI GANTC 6 cut(s) 568, 671, 785, 816, 829, 899
HpaII CCGG 2 cut(s) 580, 648
HphI GGTGA 2 cut(s) 147, 747
Hpy188I TCNGA 4 cut(s) 135, 178, 336, 898
Hpy188III TCNNGA 4 cut(s) 262, 426, 549, 1022
Hpy99I CGWCG 2 cut(s) 94, 661
HpyAV CCTTC 2 cut(s) 41, 59
HpyCH4III ACNGT 2 cut(s) 932, 987
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 8 cut(s) 116, 234, 362, 407, 452, 494, 629, 983
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 75, 359, 437, 527, 536, 653, 980
HpyF3I CTNAG 4 cut(s) 132, 177, 669, 789
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 92
HspAI GCGC 2 cut(s) 477, 530
KroI GCCGGC 1 cut(s) 647
KroNI GCCGGC 1 cut(s) 649
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 3 cut(s) 25, 332, 582
Lsp1109I GCAGC 3 cut(s) 87, 419, 835
LweI GCATC 3 cut(s) 78, 190, 427
MaeI CTAG 2 cut(s) 204, 540
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 5 cut(s) 56, 85, 96, 211, 987
MboII GAAGA 3 cut(s) 144, 794, 1010
MfeI CAATTG 2 cut(s) 398, 856
MhlI GDGCHC 3 cut(s) 140, 433, 735
MluCI AATT 6 cut(s) 187, 265, 398, 447, 751, 856
MlyI GAGTC 4 cut(s) 680, 794, 810, 893
MnlI CCTC 9 cut(s) 63, 134, 202, 262, 547, 588, 614, 710, 904
MroNI GCCGGC 1 cut(s) 647
MseI TTAA 7 cut(s) 26, 36, 111, 573, 678, 999, 1045
MspA1I CMGCKG 2 cut(s) 78, 826
MspCI CTTAAG 1 cut(s) 572
MspI CCGG 2 cut(s) 580, 648
MspR9I CCNGG 4 cut(s) 66, 295, 581, 926
MunI CAATTG 2 cut(s) 398, 856
Mva1269I GAATGC 3 cut(s) 494, 532, 976
MvaI CCWGG 3 cut(s) 66, 295, 926
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 8 cut(s) 11, 75, 359, 437, 527, 536, 653, 980
NaeI GCCGGC 1 cut(s) 649
NciI CCSGG 1 cut(s) 581
NgoMIV GCCGGC 1 cut(s) 647
NlaIV GGNNCC 1 cut(s) 732
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 211
NsbI TGCGCA 1 cut(s) 531
NspV TTCGAA 1 cut(s) 566
PciSI GCTCTTC 1 cut(s) 157
PctI GAATGC 3 cut(s) 494, 532, 976
PdiI GCCGGC 1 cut(s) 649
PfeI GAWTC 2 cut(s) 568, 829
PkrI GCNGC 3 cut(s) 77, 409, 825
PleI GAGTC 4 cut(s) 679, 793, 810, 893
PpsI GAGTC 4 cut(s) 679, 793, 810, 893
PshBI ATTAAT 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 3 cut(s) 64, 293, 924
PspGI CCWGG 3 cut(s) 64, 293, 924
PspN4I GGNNCC 1 cut(s) 732
PspPI GGNCC 2 cut(s) 650, 852
PvuII CAGCTG 1 cut(s) 826
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 7 cut(s) 26, 36, 111, 573, 678, 999, 1045
SatI GCNGC 3 cut(s) 76, 408, 824
Sau96I GGNCC 2 cut(s) 650, 852
SchI GAGTC 4 cut(s) 680, 794, 810, 893
ScrFI CCNGG 4 cut(s) 66, 295, 581, 926
SduI GDGCHC 3 cut(s) 140, 433, 735
SfaNI GCATC 3 cut(s) 78, 190, 427
SfuI TTCGAA 1 cut(s) 566
SinI GGWCC 1 cut(s) 852
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 6 cut(s) 187, 265, 398, 447, 751, 856
SsiI CCGC 4 cut(s) 78, 479, 962, 992
SspMI CTAG 2 cut(s) 204, 540
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 4 cut(s) 64, 293, 579, 924
StyI CCWWGG 1 cut(s) 965
TaaI ACNGT 2 cut(s) 932, 987
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 566
TasI AATT 6 cut(s) 187, 265, 398, 447, 751, 856
TfiI GAWTC 2 cut(s) 568, 829
Tru1I TTAA 7 cut(s) 26, 36, 111, 573, 678, 999, 1045
Tru9I TTAA 7 cut(s) 26, 36, 111, 573, 678, 999, 1045
TscAI CASTG 6 cut(s) 387, 523, 673, 691, 703, 952
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 3 cut(s) 75, 407, 823
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 6 cut(s) 266, 346, 603, 652, 789, 882
TspGWI ACGGA 2 cut(s) 319, 758
TspRI CASTG 6 cut(s) 387, 523, 673, 691, 703, 952
Vha464I CTTAAG 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 852
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 2 cut(s) 187, 265
XspI CTAG 2 cut(s) 204, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.