FvH4_2g19970

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011140
Physical Location & Seq
Reverse (-)
16837055 .. 16839447
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19970.t3

Sequence Viewer

Length: 966 bp
ATGGCTTCTGTGGTAAACGCCCCCTTAAACCTTCTTAAACCTCTCAATCTTCCTCGTCACAAACTCCGCTTCGGCAGTTGTATTGTTACGACGCCGTTTCGTTCTACCATCAATGAACCATTCCTCACTCCTCAGAGCTCAAAGCAAAGATCTTCATCCATCATCTGCTTTGCTTCTGAGAAACAAAGTTCTACTGATACTAGTTCCACGGCCAGGATCAGGAGTGAAGTTCTGACTCCATTTCGCTCCGTTCGGATGTTTTTCTATCTTGCTTTCATTGCAAGTGGTGGTTTGGGAGCTTTGATAGCAACCACACAGTTGATTGCAGCACTAACAAACCCATCAAGAGCACTTGATGCCCCTGAAATTGCAAAGGGTCTTGGAATAGATATTGGAGCAGTGTCTCTCTTTGCATTCTTGTATTATAGGGAGAACACTGCCAAGAATGCACAGATTGCTAGGTTGTCAAGAGAGGAGAACCTTTCAAATCTTAAGCTCCGGTTGGATGAAAAGAGGGTCGTTCCTGTCAGCTCTTTCAGAGGGTTTGCTCGGCTTGTGATATGTGCTGGCCCTGCATCATTCATCACCGAGTCGTTTAAGTTCAGCGAGCCTTTCACCGAAGGGCTTGTGGAAAGAGGAGTATTGGTGGTGCCCTTTGCTACGGATGGTAATTCACCAAGTTTTGAGTTTGATGAAAGTGAAGAGTCTAAGGATTTTACTTCAAAGAGAAAGAGACTCTGGCAGCTGACTCCTGTTATTGTTAGTGAATGGACCAATTGGTTAGATGAACAAAAGAAGCTGGCTGGTGTCTCCTCTGACTCACCTGTGTATATATCTCTACGCCTCGATGGTCGTGTTCGTGGCAGTGGCAGAGGTTACCCACCTTGGAATGCTTTTGTTGCTCAGTTACCGCCTGTTAAGGGAATGTGGTCAGGTCTTCTGGATGGTTTTGATGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

322

Amino Acids

35.41

Weight (kDa)

9.58

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 69 - 145 8e-26 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 649
AciI CCGC 2 cut(s) 67, 911
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 92
AfiI CCNNNNNNNGG 3 cut(s) 213, 219, 920
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 2 cut(s) 486, 723
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 6 cut(s) 138, 299, 496, 531, 745, 799
AluI AGCT 6 cut(s) 138, 299, 496, 531, 745, 799
Alw21I GWGCWC 2 cut(s) 140, 352
Alw26I GTCTC 3 cut(s) 408, 727, 814
AlwI GGATC 1 cut(s) 224
AoxI GGCC 2 cut(s) 210, 568
ApeKI GCWGC 2 cut(s) 326, 742
AspS9I GGNCC 2 cut(s) 569, 771
AsuHPI GGTGA 4 cut(s) 577, 607, 666, 813
AvaII GGWCC 1 cut(s) 771
BaeGI GKGCMC 1 cut(s) 654
BanI GGYRCC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 929
Bbv12I GWGCWC 2 cut(s) 140, 352
BbvI GCAGC 2 cut(s) 338, 754
BccI CCATC 7 cut(s) 116, 167, 349, 659, 842, 938, 947
BceAI ACGGC 2 cut(s) 79, 225
BciT130I CCWGG 1 cut(s) 214
BcoDI GTCTC 3 cut(s) 408, 727, 814
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 2 cut(s) 201, 459
BfrI CTTAAG 1 cut(s) 491
BglII AGATCT 1 cut(s) 149
BisI GCNGC 2 cut(s) 327, 743
BlsI GCNGC 2 cut(s) 328, 744
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 771
BmgT120I GGNCC 2 cut(s) 569, 771
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 346, 584
BpiI GAAGAC 1 cut(s) 929
BsaBI GATNNNNATC 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 207, 884
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 219, 920
Bse3DI GCAATG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 154
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 207, 884
BseGI GGATG 5 cut(s) 155, 261, 511, 670, 949
BseJI GATNNNNATC 1 cut(s) 154
BseLI CCNNNNNNNGG 3 cut(s) 213, 219, 920
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 146, 168, 917
BseRI GAGGAG 4 cut(s) 120, 488, 651, 802
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 2 cut(s) 338, 754
BshFI GGCC 2 cut(s) 212, 570
BshNI GGYRCC 1 cut(s) 649
BsiHKAI GWGCWC 2 cut(s) 140, 352
BsiSI CCGG 1 cut(s) 499
BslI CCNNNNNNNGG 3 cut(s) 213, 219, 920
BsmAI GTCTC 3 cut(s) 408, 727, 814
BsmI GAATGC 3 cut(s) 413, 451, 895
BsnI GGCC 2 cut(s) 212, 570
Bsp1286I GDGCHC 3 cut(s) 140, 352, 654
Bsp143I GATC 2 cut(s) 149, 216
BspACI CCGC 2 cut(s) 67, 911
BspANI GGCC 2 cut(s) 212, 570
BspCNI CTCAG 3 cut(s) 145, 169, 916
BspLI GGNNCC 1 cut(s) 651
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 649
BspTI CTTAAG 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 207, 884
BssMI GATC 2 cut(s) 149, 216
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 884
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 2 cut(s) 696, 952
BstACI GRCGYC 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 491
BstAPI GCANNNNNTGC 2 cut(s) 356, 455
BstC8I GCNNGC 3 cut(s) 568, 608, 801
BstDEI CTNAG 4 cut(s) 132, 177, 708, 903
BstDSI CCRYGG 1 cut(s) 207
BstEII GGTNACC 1 cut(s) 875
BstF5I GGATG 5 cut(s) 155, 261, 511, 670, 949
BstKTI GATC 2 cut(s) 152, 219
BstMAI GTCTC 3 cut(s) 408, 727, 814
BstMBI GATC 2 cut(s) 149, 216
BstMWI GCNNNNNNNGC 7 cut(s) 278, 305, 356, 446, 455, 572, 899
BstNI CCWGG 1 cut(s) 214
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 1 cut(s) 212
BstSLI GKGCMC 1 cut(s) 654
BstV1I GCAGC 2 cut(s) 338, 754
BstV2I GAAGAC 1 cut(s) 929
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 2 cut(s) 212, 570
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 5 cut(s) 155, 261, 511, 670, 949
BtsI GCAGTG 3 cut(s) 405, 435, 871
BtsIMutI CAGTG 3 cut(s) 405, 435, 871
Cac8I GCNNGC 3 cut(s) 568, 608, 801
Cfr13I GGNCC 2 cut(s) 569, 771
CseI GACGC 1 cut(s) 100
DdeI CTNAG 4 cut(s) 132, 177, 708, 903
DpnI GATC 2 cut(s) 151, 218
DpnII GATC 2 cut(s) 149, 216
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 696, 952
EarI CTCTTC 2 cut(s) 696, 952
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 884
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 771
Eco53kI GAGCTC 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 875
EcoICRI GAGCTC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 884
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 884
FaiI YATR 4 cut(s) 426, 562, 831, 833
Fnu4HI GCNGC 2 cut(s) 327, 743
FokI GGATG 5 cut(s) 142, 268, 518, 677, 956
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 327, 743
FspBI CTAG 2 cut(s) 201, 459
GluI GCNGC 2 cut(s) 327, 743
HaeIII GGCC 2 cut(s) 212, 570
HapII CCGG 1 cut(s) 499
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 92
HinfI GANTC 6 cut(s) 235, 590, 704, 735, 748, 818
HpaII CCGG 1 cut(s) 499
HphI GGTGA 4 cut(s) 577, 607, 666, 813
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 6 cut(s) 135, 178, 234, 255, 539, 817
Hpy188III TCNNGA 4 cut(s) 220, 345, 468, 941
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 41, 614
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 6 cut(s) 281, 326, 371, 413, 449, 575
HpyF10VI GCNNNNNNNGC 7 cut(s) 278, 305, 356, 446, 455, 572, 899
HpyF3I CTNAG 4 cut(s) 132, 177, 708, 903
Hsp92I GRCGYC 1 cut(s) 92
Kzo9I GATC 2 cut(s) 149, 216
LmnI GCTCC 4 cut(s) 251, 296, 395, 501
Lsp1109I GCAGC 2 cut(s) 338, 754
LweI GCATC 2 cut(s) 346, 584
MaeI CTAG 2 cut(s) 201, 459
MaeIII GTNAC 4 cut(s) 56, 85, 875, 906
MalI GATC 2 cut(s) 151, 218
MboI GATC 2 cut(s) 149, 216
MboII GAAGA 4 cut(s) 41, 144, 713, 929
MfeI CAATTG 1 cut(s) 775
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 3 cut(s) 140, 352, 654
MluCI AATT 3 cut(s) 366, 670, 775
MlyI GAGTC 6 cut(s) 229, 599, 713, 729, 742, 812
MmeI TCCRAC 1 cut(s) 483
MseI TTAA 6 cut(s) 26, 36, 492, 597, 918, 964
MspA1I CMGCKG 1 cut(s) 745
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 1 cut(s) 499
MspR9I CCNGG 1 cut(s) 214
MunI CAATTG 1 cut(s) 775
Mva1269I GAATGC 3 cut(s) 413, 451, 895
MvaI CCWGG 1 cut(s) 214
MwoI GCNNNNNNNGC 7 cut(s) 278, 305, 356, 446, 455, 572, 899
NdeII GATC 2 cut(s) 149, 216
NlaIV GGNNCC 1 cut(s) 651
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 56
PctI GAATGC 3 cut(s) 413, 451, 895
PkrI GCNGC 2 cut(s) 328, 744
PleI GAGTC 6 cut(s) 229, 598, 712, 729, 742, 812
PpsI GAGTC 6 cut(s) 229, 598, 712, 729, 742, 812
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 212
PspEI GGTNACC 1 cut(s) 875
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 2 cut(s) 569, 771
PsuI RGATCY 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 745
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 6 cut(s) 26, 36, 492, 597, 918, 964
SatI GCNGC 2 cut(s) 327, 743
Sau3AI GATC 2 cut(s) 149, 216
Sau96I GGNCC 2 cut(s) 569, 771
SchI GAGTC 6 cut(s) 229, 599, 713, 729, 742, 812
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 3 cut(s) 140, 352, 654
SfaNI GCATC 2 cut(s) 346, 584
SinI GGWCC 1 cut(s) 771
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 3 cut(s) 366, 670, 775
SsiI CCGC 2 cut(s) 67, 911
SspMI CTAG 2 cut(s) 201, 459
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 1 cut(s) 884
TaaI ACNGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 846
TasI AATT 3 cut(s) 366, 670, 775
Tru1I TTAA 6 cut(s) 26, 36, 492, 597, 918, 964
Tru9I TTAA 6 cut(s) 26, 36, 492, 597, 918, 964
TscAI CASTG 3 cut(s) 405, 442, 871
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 326, 742
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 7 cut(s) 129, 144, 265, 522, 571, 708, 801
TspGWI ACGGA 2 cut(s) 238, 677
TspRI CASTG 3 cut(s) 405, 442, 871
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 771
XspI CTAG 2 cut(s) 201, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.