Rroxscaffold_7G00182870

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011140
Physical Location & Seq
Forward (+)
21964538 .. 21966887
2350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182870.1

Sequence Viewer

Length: 1026 bp
ATGGCTTCTGTGGCAAACGCTCCCTTAAACCTTCTTAAACCTTTCAACCTTCCTCGTTACAAACCCGGCATCGGCAGTGGTTTTGTAACGACGCCGTTACGTTCTACCATTAATGCACCATTCCTCACAGCTCAGAGCTCAAAGCAAAGCTCTTCACCCATCATCTGCTTTGCTTCTGAGAAGCAAAATTCCTCTACTGATGCTAGGCAGGTCACACTTTGCTCTTTGGCTTGCATATTTCTTATTCAGTCCTCAACTTTCAATTCCACGGCCAGGATTAGGAGTGAAGTTCTCACTCCCTTTCGCTCCGTTCGGATGTTTTTCTATCTTGCTTTCATTGCAAGTGGTGGTTTAGGAACACTGATAGCAATCACACAATTGATTGCAGCACTAACAAACCCATCAAGAGCACTTGATGCCCCTGAAATTGCAAAGGGTCTCGGCATAGACATTTGCGCGGTGTCTCTCTTTGCATTCTTGTATTATAGGGAGAACACTGCTAAGAATGCGCAGATTGCTAGGCTTTCAAGAGAAGAGAACCTTTCGAATCTTAAGCTCCGGGTGGATGAAAAGAGGGTCATTCCTGTCAGCTCTTTGAGAGGGTTTGCTAGGCTTGTGATATGTGCTGGCCCTGCGTCGTTCATCACTGAGTCATTTAAGTTCAGCGAGCCTTTCACTGAAGGGCTTGTGGAAAGAGGAGTGTTGGTGGTGCCCTTTGCTACGGATGGTAATTCACCAAGTTTTGAGTTTGATGAAAGTGAAGAGTCTAAGGATTTTACTTCAAAGAGAAAGAGACTCTGGCAGCTGAATCCAGTTATTGTTAGTGAATGGACCAATTGGCTAGATGAACAAAAGAAACTGGCTGGTGTCTCCTCTGACTCTCCTGTGTATATATCTCTACGCCTGGACGGTCGTGTTCGTGGCAGTGGCATAGGTTACCCGCCTTGGAATGCTTTTGTTGCACAGTTACCGCCTGTTAAGGGAATGTGGTCAGGTCTTCTGGATGGTTTTGATGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

341

Amino Acids

37.35

Weight (kDa)

9.31

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 88 - 165 1.7e-24 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 709
AccII CGCG 1 cut(s) 458
AciI CCGC 3 cut(s) 458, 941, 971
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 699
AcyI GRCGYC 1 cut(s) 92
AfiI CCNNNNNNNGG 4 cut(s) 71, 273, 279, 980
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 4 cut(s) 46, 262, 528, 783
AjnI CCWGG 2 cut(s) 272, 903
AluBI AGCT 6 cut(s) 131, 138, 150, 556, 591, 805
AluI AGCT 6 cut(s) 131, 138, 150, 556, 591, 805
Alw21I GWGCWC 2 cut(s) 140, 412
Alw26I GTCTC 4 cut(s) 443, 468, 787, 874
AoxI GGCC 2 cut(s) 270, 628
ApeKI GCWGC 2 cut(s) 386, 802
ApoI RAATTY 1 cut(s) 187
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 2 cut(s) 458, 511
AspS9I GGNCC 2 cut(s) 629, 831
AsuC2I CCSGG 2 cut(s) 66, 560
AsuHPI GGTGA 2 cut(s) 147, 726
AsuII TTCGAA 1 cut(s) 545
AvaII GGWCC 1 cut(s) 831
BaeGI GKGCMC 1 cut(s) 714
BanI GGYRCC 1 cut(s) 709
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 989
Bbv12I GWGCWC 2 cut(s) 140, 412
BbvI GCAGC 2 cut(s) 398, 814
BccI CCATC 5 cut(s) 167, 409, 719, 998, 1007
BceAI ACGGC 2 cut(s) 79, 285
BciT130I CCWGG 2 cut(s) 274, 905
BcnI CCSGG 2 cut(s) 66, 560
BcoDI GTCTC 4 cut(s) 443, 468, 787, 874
BfaI CTAG 4 cut(s) 204, 519, 609, 842
BfrI CTTAAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 2 cut(s) 387, 803
BlsI GCNGC 2 cut(s) 388, 804
Bme1390I CCNGG 4 cut(s) 66, 274, 560, 905
Bme18I GGWCC 1 cut(s) 831
BmgT120I GGNCC 2 cut(s) 629, 831
BmiI GGNNCC 1 cut(s) 711
BmrFI CCNGG 4 cut(s) 66, 274, 560, 905
BmsI GCATC 3 cut(s) 78, 190, 406
BpiI GAAGAC 1 cut(s) 989
Bpu14I TTCGAA 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 66, 560
BsaBI GATNNNNATC 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 267, 944
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 273, 279, 980
Bse1I ACTGG 2 cut(s) 812, 864
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 368
BseBI CCWGG 2 cut(s) 274, 905
BseDI CCNNGG 2 cut(s) 267, 944
BseGI GGATG 4 cut(s) 321, 571, 730, 1009
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 4 cut(s) 71, 273, 279, 980
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 146, 168, 639
BseNI ACTGG 2 cut(s) 812, 864
BseRI GAGGAG 2 cut(s) 711, 862
BseSI GKGCMC 1 cut(s) 714
BseXI GCAGC 2 cut(s) 398, 814
Bsh1236I CGCG 1 cut(s) 458
Bsh1285I CGRYCG 1 cut(s) 913
BshFI GGCC 2 cut(s) 272, 630
BshNI GGYRCC 1 cut(s) 709
BsiEI CGRYCG 1 cut(s) 913
BsiHKAI GWGCWC 2 cut(s) 140, 412
BsiSI CCGG 2 cut(s) 66, 559
BslI CCNNNNNNNGG 4 cut(s) 71, 273, 279, 980
BsmAI GTCTC 4 cut(s) 443, 468, 787, 874
BsmI GAATGC 3 cut(s) 473, 511, 955
BsnI GGCC 2 cut(s) 272, 630
Bso31I GGTCTC 1 cut(s) 443
Bsp119I TTCGAA 1 cut(s) 545
Bsp1286I GDGCHC 3 cut(s) 140, 412, 714
BspACI CCGC 3 cut(s) 458, 941, 971
BspANI GGCC 2 cut(s) 272, 630
BspCNI CTCAG 3 cut(s) 145, 169, 640
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 711
BspMI ACCTGC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 709
BspTI CTTAAG 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 2 cut(s) 812, 864
BssECI CCNNGG 2 cut(s) 267, 944
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 944
Bst2UI CCWGG 2 cut(s) 274, 905
Bst4CI ACNGT 2 cut(s) 911, 966
Bst6I CTCTTC 4 cut(s) 157, 528, 756, 1012
BstACI GRCGYC 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 551
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 3 cut(s) 232, 628, 668
BstDEI CTNAG 5 cut(s) 132, 177, 501, 648, 768
BstDSI CCRYGG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 935
BstF5I GGATG 4 cut(s) 321, 571, 730, 1009
BstFNI CGCG 1 cut(s) 458
BstHHI GCGC 2 cut(s) 458, 511
BstMAI GTCTC 4 cut(s) 443, 468, 787, 874
BstMCI CGRYCG 1 cut(s) 913
BstMWI GCNNNNNNNGC 7 cut(s) 11, 338, 416, 506, 515, 632, 959
BstNI CCWGG 2 cut(s) 274, 905
BstPI GGTNACC 1 cut(s) 935
BstSCI CCNGG 4 cut(s) 64, 272, 558, 903
BstSLI GKGCMC 1 cut(s) 714
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 2 cut(s) 398, 814
BstV2I GAAGAC 1 cut(s) 989
BsuRI GGCC 2 cut(s) 272, 630
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 4 cut(s) 321, 571, 730, 1009
BtsI GCAGTG 3 cut(s) 82, 495, 931
BtsIMutI CAGTG 6 cut(s) 82, 359, 495, 645, 675, 931
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 3 cut(s) 232, 628, 668
CfoI GCGC 2 cut(s) 458, 511
Cfr13I GGNCC 2 cut(s) 629, 831
CseI GACGC 2 cut(s) 100, 624
DdeI CTNAG 5 cut(s) 132, 177, 501, 648, 768
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 4 cut(s) 157, 528, 756, 1012
EarI CTCTTC 4 cut(s) 157, 528, 756, 1012
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 944
Eco24I GRGCYC 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 831
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 699
Eco91I GGTNACC 1 cut(s) 935
EcoICRI GAGCTC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 935
EcoRII CCWGG 2 cut(s) 272, 903
EcoT14I CCWWGG 1 cut(s) 944
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 944
FaiI YATR 7 cut(s) 236, 446, 486, 622, 891, 893, 932
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FauI CCCGC 1 cut(s) 948
Fnu4HI GCNGC 2 cut(s) 387, 803
FokI GGATG 4 cut(s) 328, 578, 737, 1016
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 387, 803
FspBI CTAG 4 cut(s) 204, 519, 609, 842
FspI TGCGCA 1 cut(s) 510
GlaI GCGC 2 cut(s) 457, 510
GluI GCNGC 2 cut(s) 387, 803
HaeIII GGCC 2 cut(s) 272, 630
HapII CCGG 2 cut(s) 66, 559
HgaI GACGC 2 cut(s) 100, 624
HhaI GCGC 2 cut(s) 458, 511
Hin1I GRCGYC 1 cut(s) 92
Hin6I GCGC 2 cut(s) 456, 509
HinP1I GCGC 2 cut(s) 456, 509
HinfI GANTC 6 cut(s) 547, 650, 764, 795, 808, 878
HpaII CCGG 2 cut(s) 66, 559
HphI GGTGA 2 cut(s) 147, 726
Hpy188I TCNGA 4 cut(s) 135, 178, 315, 877
Hpy188III TCNNGA 3 cut(s) 405, 528, 1001
Hpy99I CGWCG 2 cut(s) 94, 640
HpyAV CCTTC 3 cut(s) 41, 59, 674
HpyCH4III ACNGT 2 cut(s) 911, 966
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 7 cut(s) 116, 234, 341, 386, 431, 473, 962
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 338, 416, 506, 515, 632, 959
HpyF3I CTNAG 5 cut(s) 132, 177, 501, 648, 768
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 92
HspAI GCGC 2 cut(s) 456, 509
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 3 cut(s) 25, 311, 561
Lsp1109I GCAGC 2 cut(s) 398, 814
LweI GCATC 3 cut(s) 78, 190, 406
MaeI CTAG 4 cut(s) 204, 519, 609, 842
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 6 cut(s) 56, 85, 96, 211, 935, 966
MboII GAAGA 4 cut(s) 144, 545, 773, 989
MfeI CAATTG 2 cut(s) 377, 835
MhlI GDGCHC 3 cut(s) 140, 412, 714
MluCI AATT 6 cut(s) 187, 262, 377, 426, 730, 835
MlyI GAGTC 4 cut(s) 659, 773, 789, 872
MnlI CCTC 8 cut(s) 63, 134, 202, 262, 567, 593, 689, 883
MseI TTAA 7 cut(s) 26, 36, 111, 552, 657, 978, 1024
MspA1I CMGCKG 1 cut(s) 805
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 2 cut(s) 66, 559
MspR9I CCNGG 4 cut(s) 66, 274, 560, 905
MunI CAATTG 2 cut(s) 377, 835
Mva1269I GAATGC 3 cut(s) 473, 511, 955
MvaI CCWGG 2 cut(s) 274, 905
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 7 cut(s) 11, 338, 416, 506, 515, 632, 959
NciI CCSGG 2 cut(s) 66, 560
NlaIV GGNNCC 1 cut(s) 711
NmeAIII GCCGAG 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 211
NsbI TGCGCA 1 cut(s) 510
NspV TTCGAA 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 157
PctI GAATGC 3 cut(s) 473, 511, 955
PfeI GAWTC 2 cut(s) 547, 808
PkrI GCNGC 2 cut(s) 388, 804
PleI GAGTC 4 cut(s) 658, 772, 789, 872
PpsI GAGTC 4 cut(s) 658, 772, 789, 872
PshBI ATTAAT 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 272, 903
PspEI GGTNACC 1 cut(s) 935
PspGI CCWGG 2 cut(s) 272, 903
PspN4I GGNNCC 1 cut(s) 711
PspPI GGNCC 2 cut(s) 629, 831
PvuII CAGCTG 1 cut(s) 805
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 7 cut(s) 26, 36, 111, 552, 657, 978, 1024
SatI GCNGC 2 cut(s) 387, 803
Sau96I GGNCC 2 cut(s) 629, 831
SchI GAGTC 4 cut(s) 659, 773, 789, 872
ScrFI CCNGG 4 cut(s) 66, 274, 560, 905
SduI GDGCHC 3 cut(s) 140, 412, 714
SfaNI GCATC 3 cut(s) 78, 190, 406
SfuI TTCGAA 1 cut(s) 545
SinI GGWCC 1 cut(s) 831
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 6 cut(s) 187, 262, 377, 426, 730, 835
SsiI CCGC 3 cut(s) 458, 941, 971
SspMI CTAG 4 cut(s) 204, 519, 609, 842
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 4 cut(s) 64, 272, 558, 903
StyI CCWWGG 1 cut(s) 944
TaaI ACNGT 2 cut(s) 911, 966
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 545
TasI AATT 6 cut(s) 187, 262, 377, 426, 730, 835
TfiI GAWTC 2 cut(s) 547, 808
Tru1I TTAA 7 cut(s) 26, 36, 111, 552, 657, 978, 1024
Tru9I TTAA 7 cut(s) 26, 36, 111, 552, 657, 978, 1024
TscAI CASTG 6 cut(s) 82, 366, 502, 652, 682, 931
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 2 cut(s) 386, 802
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 5 cut(s) 325, 582, 631, 768, 861
TspGWI ACGGA 2 cut(s) 298, 737
TspRI CASTG 6 cut(s) 82, 366, 502, 652, 682, 931
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 831
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 187
XspI CTAG 4 cut(s) 204, 519, 609, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.