MD05G1184000.v1.1

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011140
Physical Location & Seq
Reverse (-)
31251591 .. 31253965
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1184000.v1.1.491

Sequence Viewer

Length: 969 bp
ATGGCTTCTGTTGCAAACTCTCCCTTACACATCCTCAAACCTCGAAATCACACTCACTACAAACTCAGCAGTGGAATCAGAACGACCCTCTGGTCATTCTCTTGTACAAATGCACCATTTCTCACTCTGCAGACCTCAAAGCATAAGTCTTCAACCATCACATGCTTTGCAACTGATAAGCAAACTTCTCCTACTGAAATCAGGTCTTCCCTTTTCCAGTATTTTGAGAATGATTGTTTCGTTTGTTTGTTCCTCAGTTCCACAGCCAGGATCAGGAGTGAAGTTCTCACTCCCTTTCGCTCCGTTCGAATGTTTTTCTATCTTGCTTTCATTGCAAGTGGTGGTTTAGGAGGACTAATAGCAACCACACAGTTGATTGCAGCACGAACAAACCCATCAAGAGCACTTGATGCCACCGAAATTGCCAAGGGTCTTGGCAAAGACCTTGGAGCAGTGTCTCTCTTTGCATTTTTGTATTTGAGGGAGAACAAGGCCAAAGATGCACAGATTGCTAGGCTCTCTCGAGAGGAAAACCTTTCGAATCTTAAGCTTCGTGCTTCTGAAAAGAAAGTCATTCTCCTTAGCTCTTTGAGAGGGATTGCTCGGCTGGTAATATGTGCTGGCCCTGCATCGTTCATCACAGAATCCTTCAATCGAAGTGAGCCTTTCACTAAAGGGCCTGTGGAAAGAGGAGTGCTCGTTGTGCCCTTGGCTACGCATGGAAACGTACCTAGTTTTGAGTTTGAAGAAAGTGAAGAGGCTAAGGATATTACTGCAAAGAGGAAAAGACTCTGGCAGCTGACTCCAATTAATGTCACTGAATGGACCAAGTATATATCTCTTCGCCTGGATGGTCGTGTTCGTGGCAGTGGCGTTGGTTACCCACCTTGGAATGCTTTTGTTGCGCAGTTACCACCTGTAAAGGGAATGTGGTCTGGTCTCCTCGACGGGGTTGATGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

323

Amino Acids

35.59

Weight (kDa)

9.82

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 87 - 163 1.5e-23 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
Acc16I TGCGCA 1 cut(s) 906
AclWI GGATC 1 cut(s) 278
AfaI GTAC 2 cut(s) 106, 729
AfiI CCNNNNNNNGG 4 cut(s) 267, 273, 923, 949
AflII CTTAAG 1 cut(s) 545
AgsI TTSAA 3 cut(s) 153, 652, 746
AjnI CCWGG 2 cut(s) 266, 846
AluBI AGCT 3 cut(s) 550, 585, 799
AluI AGCT 3 cut(s) 550, 585, 799
Alw21I GWGCWC 2 cut(s) 406, 699
Alw26I GTCTC 2 cut(s) 462, 944
AlwI GGATC 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 3 cut(s) 492, 622, 677
ApeKI GCWGC 2 cut(s) 380, 796
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AseI ATTAAT 1 cut(s) 810
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 3 cut(s) 623, 677, 825
AsuII TTCGAA 2 cut(s) 307, 539
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 1 cut(s) 825
BaeGI GKGCMC 1 cut(s) 708
BbsI GAAGAC 2 cut(s) 141, 198
Bbv12I GWGCWC 2 cut(s) 406, 699
BbvI GCAGC 2 cut(s) 392, 808
BccI CCATC 4 cut(s) 164, 403, 845, 950
BciT130I CCWGG 2 cut(s) 268, 848
BcoDI GTCTC 2 cut(s) 462, 944
BfaI CTAG 2 cut(s) 513, 732
BfmI CTRYAG 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 545
BisI GCNGC 2 cut(s) 381, 797
BlsI GCNGC 2 cut(s) 382, 798
Bme1390I CCNGG 2 cut(s) 268, 848
Bme18I GGWCC 1 cut(s) 825
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 3 cut(s) 623, 677, 825
BmrFI CCNGG 2 cut(s) 268, 848
BmsI GCATC 3 cut(s) 400, 490, 638
BpiI GAAGAC 2 cut(s) 141, 198
BplI GAGNNNNNCTC 2 cut(s) 681, 713
Bpu10I CCTNAGC 2 cut(s) 581, 762
Bpu14I TTCGAA 2 cut(s) 307, 539
BsaI GGTCTC 1 cut(s) 944
BsaJI CCNNGG 4 cut(s) 426, 445, 708, 887
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bsc4I CCNNNNNNNGG 4 cut(s) 267, 273, 923, 949
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 268, 848
BseDI CCNNGG 4 cut(s) 426, 445, 708, 887
BseGI GGATG 2 cut(s) 30, 856
BseLI CCNNNNNNNGG 4 cut(s) 267, 273, 923, 949
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 79, 268
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 705, 932
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 2 cut(s) 392, 808
BshFI GGCC 3 cut(s) 494, 624, 679
BsiHKAI GWGCWC 2 cut(s) 406, 699
BsiHKCI CYCGRG 1 cut(s) 522
BslI CCNNNNNNNGG 4 cut(s) 267, 273, 923, 949
BsmAI GTCTC 2 cut(s) 462, 944
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 3 cut(s) 494, 624, 679
Bso31I GGTCTC 1 cut(s) 944
BsoBI CYCGRG 1 cut(s) 522
Bsp119I TTCGAA 2 cut(s) 307, 539
Bsp1286I GDGCHC 3 cut(s) 406, 699, 708
Bsp1407I TGTACA 1 cut(s) 104
Bsp143I GATC 1 cut(s) 270
BspANI GGCC 3 cut(s) 494, 624, 679
BspCNI CTCAG 2 cut(s) 78, 267
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 1 cut(s) 278
BspT104I TTCGAA 2 cut(s) 307, 539
BspTI CTTAAG 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 104
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 4 cut(s) 426, 445, 708, 887
BssMI GATC 1 cut(s) 270
BssT1I CCWWGG 4 cut(s) 426, 445, 708, 887
Bst2UI CCWGG 2 cut(s) 268, 848
Bst4CI ACNGT 1 cut(s) 372
Bst6I CTCTTC 3 cut(s) 750, 846, 955
BstAFI CTTAAG 1 cut(s) 545
BstAPI GCANNNNNTGC 2 cut(s) 410, 509
BstAUI TGTACA 1 cut(s) 104
BstBI TTCGAA 2 cut(s) 307, 539
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 4 cut(s) 65, 254, 581, 762
BstEII GGTNACC 1 cut(s) 878
BstF5I GGATG 2 cut(s) 30, 856
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 462, 944
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 8 cut(s) 11, 332, 410, 500, 509, 626, 703, 902
BstNI CCWGG 2 cut(s) 268, 848
BstNSI RCATGY 1 cut(s) 165
BstPI GGTNACC 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 266, 846
BstSFI CTRYAG 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 708
BstV1I GCAGC 2 cut(s) 392, 808
BstV2I GAAGAC 2 cut(s) 141, 198
BsuRI GGCC 3 cut(s) 494, 624, 679
BtsCI GGATG 2 cut(s) 30, 856
BtsI GCAGTG 3 cut(s) 76, 459, 874
BtsIMutI CAGTG 4 cut(s) 76, 459, 816, 874
Cac8I GCNNGC 1 cut(s) 622
CfoI GCGC 1 cut(s) 907
Cfr13I GGNCC 3 cut(s) 623, 677, 825
Csp6I GTAC 2 cut(s) 105, 728
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 2 cut(s) 162, 719
CviQI GTAC 2 cut(s) 105, 728
DdeI CTNAG 4 cut(s) 65, 254, 581, 762
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 3 cut(s) 750, 846, 955
EarI CTCTTC 3 cut(s) 750, 846, 955
Eco130I CCWWGG 4 cut(s) 426, 445, 708, 887
Eco31I GGTCTC 1 cut(s) 944
Eco47I GGWCC 1 cut(s) 825
Eco88I CYCGRG 1 cut(s) 522
Eco91I GGTNACC 1 cut(s) 878
EcoO109I RGGNCCY 1 cut(s) 677
EcoO65I GGTNACC 1 cut(s) 878
EcoRII CCWGG 2 cut(s) 266, 846
EcoT14I CCWWGG 4 cut(s) 426, 445, 708, 887
ErhI CCWWGG 4 cut(s) 426, 445, 708, 887
FaeI CATG 2 cut(s) 165, 722
FaiI YATR 6 cut(s) 144, 163, 616, 720, 834, 836
FalI AAGNNNNNCTT 2 cut(s) 649, 681
FatI CATG 2 cut(s) 161, 718
Fnu4HI GCNGC 2 cut(s) 381, 797
FokI GGATG 2 cut(s) 17, 863
Fsp4HI GCNGC 2 cut(s) 381, 797
FspBI CTAG 2 cut(s) 513, 732
FspI TGCGCA 1 cut(s) 906
GlaI GCGC 1 cut(s) 906
GluI GCNGC 2 cut(s) 381, 797
HaeIII GGCC 3 cut(s) 494, 624, 679
HhaI GCGC 1 cut(s) 907
Hin1II CATG 2 cut(s) 165, 722
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 5 cut(s) 75, 541, 644, 789, 802
Hpy188I TCNGA 2 cut(s) 80, 562
Hpy188III TCNNGA 4 cut(s) 274, 399, 522, 524
Hpy99I CGWCG 1 cut(s) 950
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4IV ACGT 1 cut(s) 726
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 332, 410, 500, 509, 626, 703, 902
HpyF3I CTNAG 4 cut(s) 65, 254, 581, 762
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 2 cut(s) 165, 722
HspAI GCGC 1 cut(s) 905
Kzo9I GATC 1 cut(s) 270
LmnI GCTCC 2 cut(s) 305, 449
Lsp1109I GCAGC 2 cut(s) 392, 808
LweI GCATC 3 cut(s) 400, 490, 638
MaeI CTAG 2 cut(s) 513, 732
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 3 cut(s) 814, 878, 909
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 5 cut(s) 141, 198, 758, 767, 833
MhlI GDGCHC 3 cut(s) 406, 699, 708
MluCI AATT 2 cut(s) 420, 807
MlyI GAGTC 2 cut(s) 783, 796
MseI TTAA 3 cut(s) 546, 810, 967
MspA1I CMGCKG 1 cut(s) 799
MspCI CTTAAG 1 cut(s) 545
MspR9I CCNGG 2 cut(s) 268, 848
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 2 cut(s) 268, 848
MwoI GCNNNNNNNGC 8 cut(s) 11, 332, 410, 500, 509, 626, 703, 902
NdeII GATC 1 cut(s) 270
NlaIII CATG 2 cut(s) 165, 722
NmeAIII GCCGAG 1 cut(s) 583
NmuCI GTSAC 1 cut(s) 814
NsbI TGCGCA 1 cut(s) 906
NspI RCATGY 1 cut(s) 165
NspV TTCGAA 2 cut(s) 307, 539
PaeR7I CTCGAG 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PctI GAATGC 1 cut(s) 898
PfeI GAWTC 3 cut(s) 75, 541, 644
PkrI GCNGC 2 cut(s) 382, 798
PleI GAGTC 2 cut(s) 783, 796
PpsI GAGTC 2 cut(s) 783, 796
PshBI ATTAAT 1 cut(s) 810
Psp6I CCWGG 2 cut(s) 266, 846
PspEI GGTNACC 1 cut(s) 878
PspGI CCWGG 2 cut(s) 266, 846
PspPI GGNCC 3 cut(s) 623, 677, 825
PstI CTGCAG 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 799
RsaI GTAC 2 cut(s) 106, 729
RsaNI GTAC 2 cut(s) 105, 728
SaqAI TTAA 3 cut(s) 546, 810, 967
SatI GCNGC 2 cut(s) 381, 797
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 3 cut(s) 623, 677, 825
SchI GAGTC 2 cut(s) 783, 796
ScrFI CCNGG 2 cut(s) 268, 848
SduI GDGCHC 3 cut(s) 406, 699, 708
SfaNI GCATC 3 cut(s) 400, 490, 638
SfcI CTRYAG 1 cut(s) 128
Sfr274I CTCGAG 1 cut(s) 522
SfuI TTCGAA 2 cut(s) 307, 539
SinI GGWCC 1 cut(s) 825
SlaI CTCGAG 1 cut(s) 522
SmlI CTYRAG 2 cut(s) 522, 545
SmoI CTYRAG 2 cut(s) 522, 545
Sse9I AATT 2 cut(s) 420, 807
SspMI CTAG 2 cut(s) 513, 732
StyD4I CCNGG 2 cut(s) 266, 846
StyI CCWWGG 4 cut(s) 426, 445, 708, 887
TaaI ACNGT 1 cut(s) 372
TaiI ACGT 1 cut(s) 729
TaqI TCGA 6 cut(s) 43, 307, 523, 539, 655, 945
TasI AATT 2 cut(s) 420, 807
TatI WGTACW 1 cut(s) 104
TfiI GAWTC 3 cut(s) 75, 541, 644
Tru1I TTAA 3 cut(s) 546, 810, 967
Tru9I TTAA 3 cut(s) 546, 810, 967
TscAI CASTG 4 cut(s) 76, 459, 823, 874
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 2 cut(s) 380, 796
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 2 cut(s) 319, 625
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 4 cut(s) 76, 459, 823, 874
Vha464I CTTAAG 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 825
VspI ATTAAT 1 cut(s) 810
XceI RCATGY 1 cut(s) 165
XhoI CTCGAG 1 cut(s) 522
XspI CTAG 2 cut(s) 513, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.