MD10G1171900.v1.1

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0011140
Physical Location & Seq
Reverse (-)
26443462 .. 26445516
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1171900.v1.1.491

Sequence Viewer

Length: 966 bp
ATGGCTTCTGTGGCAAATTCTCCCTTCTACATTCTCAAACCTCCAAATCACACTCACTACAAACTCAGCAGTGGAATCAGAACCACCCTCTGGTCATTCTCTTGTAGCAATGCACAATTTCTCACTCTGCAGACCTCAAAGCACAAGTCTTCAACCATCACATGCTTTGCAACTGATAAGCAAACTTCTTCTACTGAAATCAGTTCCACAGCCAGGATTAGGAGTGAAGTTCTCACTCCCTTTCGCTCCGTTCGAATGTTTTTCTATCTTGCTTTCATTGCAAGTGGTGGTTTAGGAGGATTAATAGCAACCACACAGTTAATTGCAGCACTAACAAATCCATCAAGAGCACTCGACGCCCCCGAAATTGCAAAGGGTCTTGGCATAGACCTTGGAGCAGTGTCTCTCTTTGCATTCTTGTATTTGAGGGAGAACAAGGCCAAGAATGCACAGATTGCCAGGCTCTCTCGAGAGGAAAATCTTTCAAATCTCAAGCTTCGTGTTTCTGAAAAGACGGTCATTCCTGTTAGCTCTTTGAGAGGGATTGCTCGGCTTGTAATATGCGCTGGCCCTGCATCGTTCATCACAGAATCGTTCAACCGAAGTGAGCCTTTCACCGAAGGGCTTGTGGAAAGAGGAGTGCTTGTTGTGCCCTTGGCTACGGATGGAAACATGCCTAGTTTTGAGTTTGAAGAAAGTGAAGAGGCTAAGGATATTACTACAAAGAGGAAAAGACTCTGGCAGCTAACTCCAATTTATGTTACTGAATGGACCAACTGGTTGGACGAACAAAAGAAGCTGGCCGGTGTCACCTCTGACTCTCCCGTATATATATCTCTTCGCCTGGATGGTCGTGTTCGTGGCAGTGGCGTTGGTTACCCACCTTGGAATGCTTTCGTTGCACAGTTACCACCTGTCAAGGGAATGTGGTCTGGTCTTCTCGACGGGTTTGATGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

322

Amino Acids

35.29

Weight (kDa)

9.42

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 69 - 145 6.6e-25 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 357
AfiI CCNNNNNNNGG 4 cut(s) 90, 213, 219, 920
AgsI TTSAA 4 cut(s) 153, 486, 598, 692
AjnI CCWGG 3 cut(s) 212, 458, 843
AluBI AGCT 4 cut(s) 496, 531, 745, 799
AluI AGCT 4 cut(s) 496, 531, 745, 799
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 1 cut(s) 408
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 3 cut(s) 438, 568, 801
ApeKI GCWGC 2 cut(s) 326, 742
ApoI RAATTY 1 cut(s) 16
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AseI ATTAAT 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 893
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 2 cut(s) 569, 771
AsuHPI GGTGA 2 cut(s) 607, 802
AsuII TTCGAA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 468
AvaII GGWCC 1 cut(s) 771
BaeGI GKGCMC 1 cut(s) 654
BbsI GAAGAC 2 cut(s) 141, 929
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 338, 754
BccI CCATC 5 cut(s) 164, 349, 659, 842, 947
BciT130I CCWGG 3 cut(s) 214, 460, 845
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 678
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 327, 743
BlsI GCNGC 2 cut(s) 328, 744
Bme1390I CCNGG 3 cut(s) 214, 460, 845
Bme18I GGWCC 1 cut(s) 771
BmeT110I CYCGRG 1 cut(s) 468
BmgT120I GGNCC 2 cut(s) 569, 771
BmrFI CCNGG 3 cut(s) 214, 460, 845
BmsI GCATC 1 cut(s) 584
BpiI GAAGAC 2 cut(s) 141, 929
Bpu10I CCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 391, 654, 884
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 213, 219, 920
Bse118I RCCGGY 1 cut(s) 803
Bse1I ACTGG 1 cut(s) 782
Bse3DI GCAATG 2 cut(s) 115, 276
BseBI CCWGG 3 cut(s) 214, 460, 845
BseDI CCNNGG 3 cut(s) 391, 654, 884
BseGI GGATG 2 cut(s) 670, 853
BseLI CCNNNNNNNGG 4 cut(s) 90, 213, 219, 920
BseMI GCAATG 2 cut(s) 115, 276
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 782
BseRI GAGGAG 1 cut(s) 651
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 2 cut(s) 338, 754
BshFI GGCC 3 cut(s) 440, 570, 803
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 1 cut(s) 804
BslI CCNNNNNNNGG 4 cut(s) 90, 213, 219, 920
BsmAI GTCTC 1 cut(s) 408
BsmI GAATGC 3 cut(s) 413, 451, 895
BsnI GGCC 3 cut(s) 440, 570, 803
BsoBI CYCGRG 1 cut(s) 468
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 2 cut(s) 352, 654
BspANI GGCC 3 cut(s) 440, 570, 803
BspCNI CTCAG 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 115, 276
BsrFI RCCGGY 1 cut(s) 803
BsrI ACTGG 1 cut(s) 782
BssAI RCCGGY 1 cut(s) 803
BssECI CCNNGG 3 cut(s) 391, 654, 884
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 3 cut(s) 391, 654, 884
Bst2UI CCWGG 3 cut(s) 214, 460, 845
Bst4CI ACNGT 3 cut(s) 318, 517, 906
Bst6I CTCTTC 3 cut(s) 696, 843, 952
BstACI GRCGYC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 568, 801
BstDEI CTNAG 2 cut(s) 65, 708
BstEII GGTNACC 1 cut(s) 875
BstF5I GGATG 2 cut(s) 670, 853
BstHHI GCGC 1 cut(s) 566
BstMAI GTCTC 1 cut(s) 408
BstMWI GCNNNNNNNGC 8 cut(s) 11, 278, 356, 446, 455, 572, 649, 899
BstNI CCWGG 3 cut(s) 214, 460, 845
BstNSI RCATGY 2 cut(s) 165, 676
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 3 cut(s) 212, 458, 843
BstSFI CTRYAG 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 654
BstV1I GCAGC 2 cut(s) 338, 754
BstV2I GAAGAC 2 cut(s) 141, 929
BstXI CCANNNNNNTGG 1 cut(s) 781
BsuRI GGCC 3 cut(s) 440, 570, 803
BtsCI GGATG 2 cut(s) 670, 853
BtsI GCAGTG 3 cut(s) 76, 405, 871
BtsIMutI CAGTG 3 cut(s) 76, 405, 871
Cac8I GCNNGC 2 cut(s) 568, 801
CfoI GCGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 803
Cfr13I GGNCC 2 cut(s) 569, 771
CseI GACGC 1 cut(s) 365
CviAII CATG 2 cut(s) 162, 673
DdeI CTNAG 2 cut(s) 65, 708
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 3 cut(s) 696, 843, 952
EarI CTCTTC 3 cut(s) 696, 843, 952
Eco130I CCWWGG 3 cut(s) 391, 654, 884
Eco47I GGWCC 1 cut(s) 771
Eco88I CYCGRG 1 cut(s) 468
Eco91I GGTNACC 1 cut(s) 875
EcoO65I GGTNACC 1 cut(s) 875
EcoRII CCWGG 3 cut(s) 212, 458, 843
EcoT14I CCWWGG 3 cut(s) 391, 654, 884
ErhI CCWWGG 3 cut(s) 391, 654, 884
FaeI CATG 2 cut(s) 165, 676
FaiI YATR 8 cut(s) 163, 386, 562, 674, 759, 829, 831, 833
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FatI CATG 2 cut(s) 161, 672
Fnu4HI GCNGC 2 cut(s) 327, 743
FokI GGATG 2 cut(s) 677, 860
Fsp4HI GCNGC 2 cut(s) 327, 743
FspBI CTAG 1 cut(s) 678
GlaI GCGC 1 cut(s) 565
GluI GCNGC 2 cut(s) 327, 743
HaeIII GGCC 3 cut(s) 440, 570, 803
HapII CCGG 1 cut(s) 804
HgaI GACGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 566
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 2 cut(s) 165, 676
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 4 cut(s) 75, 590, 735, 818
HpaII CCGG 1 cut(s) 804
HphI GGTGA 2 cut(s) 607, 802
Hpy188I TCNGA 3 cut(s) 80, 508, 817
Hpy188III TCNNGA 4 cut(s) 345, 468, 470, 941
Hpy99I CGWCG 2 cut(s) 359, 947
HpyAV CCTTC 2 cut(s) 34, 614
HpyCH4III ACNGT 3 cut(s) 318, 517, 906
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 278, 356, 446, 455, 572, 649, 899
HpyF3I CTNAG 2 cut(s) 65, 708
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 2 cut(s) 165, 676
HspAI GCGC 1 cut(s) 564
LmnI GCTCC 2 cut(s) 251, 395
Lsp1109I GCAGC 2 cut(s) 338, 754
LweI GCATC 1 cut(s) 584
MaeI CTAG 1 cut(s) 678
MaeIII GTNAC 4 cut(s) 760, 808, 875, 906
MboII GAAGA 6 cut(s) 141, 180, 704, 713, 830, 929
MhlI GDGCHC 2 cut(s) 352, 654
MluCI AATT 5 cut(s) 16, 116, 321, 366, 753
MlyI GAGTC 2 cut(s) 729, 812
MmeI TCCRAC 1 cut(s) 762
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 3 cut(s) 302, 320, 964
MspI CCGG 1 cut(s) 804
MspR9I CCNGG 3 cut(s) 214, 460, 845
Mva1269I GAATGC 3 cut(s) 413, 451, 895
MvaI CCWGG 3 cut(s) 214, 460, 845
MwoI GCNNNNNNNGC 8 cut(s) 11, 278, 356, 446, 455, 572, 649, 899
NlaIII CATG 2 cut(s) 165, 676
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 808
NspI RCATGY 2 cut(s) 165, 676
NspV TTCGAA 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 468
PcsI WCGNNNNNNNCGW 2 cut(s) 250, 360
PctI GAATGC 3 cut(s) 413, 451, 895
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 2 cut(s) 75, 590
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 2 cut(s) 328, 744
PleI GAGTC 2 cut(s) 729, 812
PpsI GAGTC 2 cut(s) 729, 812
PshBI ATTAAT 1 cut(s) 302
Psp6I CCWGG 3 cut(s) 212, 458, 843
PspEI GGTNACC 1 cut(s) 875
PspGI CCWGG 3 cut(s) 212, 458, 843
PspPI GGNCC 2 cut(s) 569, 771
PstI CTGCAG 1 cut(s) 132
SaqAI TTAA 3 cut(s) 302, 320, 964
SatI GCNGC 2 cut(s) 327, 743
Sau96I GGNCC 2 cut(s) 569, 771
SchI GAGTC 2 cut(s) 729, 812
ScrFI CCNGG 3 cut(s) 214, 460, 845
SduI GDGCHC 2 cut(s) 352, 654
SfaNI GCATC 1 cut(s) 584
SfcI CTRYAG 1 cut(s) 128
Sfr274I CTCGAG 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 1 cut(s) 771
SlaI CTCGAG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 468, 491
SmoI CTYRAG 2 cut(s) 468, 491
Sse9I AATT 5 cut(s) 16, 116, 321, 366, 753
SspMI CTAG 1 cut(s) 678
StyD4I CCNGG 3 cut(s) 212, 458, 843
StyI CCWWGG 3 cut(s) 391, 654, 884
TaaI ACNGT 3 cut(s) 318, 517, 906
TaqI TCGA 4 cut(s) 253, 354, 469, 942
TasI AATT 5 cut(s) 16, 116, 321, 366, 753
TfiI GAWTC 2 cut(s) 75, 590
Tru1I TTAA 3 cut(s) 302, 320, 964
Tru9I TTAA 3 cut(s) 302, 320, 964
TscAI CASTG 3 cut(s) 76, 405, 871
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 2 cut(s) 326, 742
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 2 cut(s) 265, 571
TspGWI ACGGA 2 cut(s) 238, 677
TspRI CASTG 3 cut(s) 76, 405, 871
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 771
VspI ATTAAT 1 cut(s) 302
XapI RAATTY 1 cut(s) 16
XceI RCATGY 2 cut(s) 165, 676
XhoI CTCGAG 1 cut(s) 468
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.