RchiOBHm_Chr6g0285631

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011140
Physical Location & Seq
Reverse (-)
48958892 .. 48961015
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25621

Sequence Viewer

Length: 969 bp
ATGGCTTCTGTGGCAAACGCTCCCTTAAACCTTCTTAAACCTCTCAACCTTCCTCGTTACAAACCCGGCATCGGCAGTGGTTTTGTAACGACGCCGTCACGTTCTACCATTAATGCACCATTCCTCACAGCTCAGAGCTCAAAGCAAAGCTCTTCACCCATCATCTGCTTTGCTTCTGAGAAGCAAAATTCCTCTACTGATGCTAGTTCCACGGCCAGGATTAGGAGTGAAGTTCTCACTCCCTTTCGTTCCGTTCGGATGTTTTTCTATCTTGCTTTCATTGCAAGTGGTGGTTTAGGAACACTGATAGCAACCACACAATTGATTGCAGCACTAACAAACCCATCAAGAGCACTTGATGCCCCTGAAATTGCAAAGGGTCTCGGCATCGACATTTGCGCGGTGTCTCTCTTTGCATTCTTGTATTATAGGGAGAACACTGCTAAGAATGCGCAGATTGCTAGGCTGTCAAGAGAGGAGAACCTTTCGAATCTTAAGCTCCGGGTGGATGAAAAGAGGGTCATTCCTGTCAGCTCTTTGAGAGGGTTTGCTAGGCTTGTGATATGTGCTGGCCCTGCGTCGTTCATCACTGAGTCGTTTAAGTTCAGCGAGCCTTTCACTGAAGGGCTTGTGGAAAGAGGAGTGTTGGTGGTGCCCTTTGCTACGGATGGTAATTCACCAAGTTTTGAGTTTGATGAAAGTGACGAGTCTAAGGATTTTACTTCAAAGAGAAAGAGACTCTGGCAGCTGAATCCAGTTATTGTTAGTGAATGGACCAATTGGTTAGATGAACAAAAGAAACTGGCTGGTGTCTCCTCTGACTCTCCTGTGTATATATCTCTACGCCTGGACGGTCGTGTTCGTGGCAGTGGCATAGGTTACCCGCCTTGGAATGCTTTTGTTGCACAGTTACCGCCTGTTAAGGGAATGTGGTCAGGTCTTCTGGATGGTTTTGATGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

322

Amino Acids

35.13

Weight (kDa)

9.35

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 69 - 146 1.4e-24 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 652
AccII CGCG 1 cut(s) 401
AciI CCGC 3 cut(s) 401, 884, 914
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 642
AcyI GRCGYC 1 cut(s) 92
AfiI CCNNNNNNNGG 4 cut(s) 71, 216, 222, 923
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 1 cut(s) 726
AjnI CCWGG 2 cut(s) 215, 846
AluBI AGCT 6 cut(s) 131, 138, 150, 499, 534, 748
AluI AGCT 6 cut(s) 131, 138, 150, 499, 534, 748
Alw21I GWGCWC 2 cut(s) 140, 355
Alw26I GTCTC 4 cut(s) 386, 411, 730, 817
AoxI GGCC 2 cut(s) 213, 571
ApeKI GCWGC 2 cut(s) 329, 745
ApoI RAATTY 1 cut(s) 187
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 2 cut(s) 401, 454
AspS9I GGNCC 2 cut(s) 572, 774
AsuC2I CCSGG 2 cut(s) 66, 503
AsuHPI GGTGA 2 cut(s) 147, 669
AsuII TTCGAA 1 cut(s) 488
AvaII GGWCC 1 cut(s) 774
BaeGI GKGCMC 1 cut(s) 657
BanI GGYRCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 932
Bbv12I GWGCWC 2 cut(s) 140, 355
BbvI GCAGC 2 cut(s) 341, 757
BccI CCATC 5 cut(s) 167, 352, 662, 941, 950
BceAI ACGGC 2 cut(s) 79, 228
BciT130I CCWGG 2 cut(s) 217, 848
BcnI CCSGG 2 cut(s) 66, 503
BcoDI GTCTC 4 cut(s) 386, 411, 730, 817
BfaI CTAG 3 cut(s) 204, 462, 552
BfrI CTTAAG 1 cut(s) 494
BisI GCNGC 2 cut(s) 330, 746
BlsI GCNGC 2 cut(s) 331, 747
Bme1390I CCNGG 4 cut(s) 66, 217, 503, 848
Bme18I GGWCC 1 cut(s) 774
BmgT120I GGNCC 2 cut(s) 572, 774
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 4 cut(s) 66, 217, 503, 848
BmsI GCATC 4 cut(s) 78, 190, 349, 396
BpiI GAAGAC 1 cut(s) 932
Bpu14I TTCGAA 1 cut(s) 488
BpuMI CCSGG 2 cut(s) 66, 503
BsaHI GRCGYC 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 210, 887
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 216, 222, 923
Bse1I ACTGG 2 cut(s) 755, 807
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 2 cut(s) 217, 848
BseDI CCNNGG 2 cut(s) 210, 887
BseGI GGATG 4 cut(s) 264, 514, 673, 952
BseLI CCNNNNNNNGG 4 cut(s) 71, 216, 222, 923
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 3 cut(s) 146, 168, 582
BseNI ACTGG 2 cut(s) 755, 807
BseRI GAGGAG 3 cut(s) 491, 654, 805
BseSI GKGCMC 1 cut(s) 657
BseXI GCAGC 2 cut(s) 341, 757
Bsh1236I CGCG 1 cut(s) 401
Bsh1285I CGRYCG 1 cut(s) 856
BshFI GGCC 2 cut(s) 215, 573
BshNI GGYRCC 1 cut(s) 652
BsiEI CGRYCG 1 cut(s) 856
BsiHKAI GWGCWC 2 cut(s) 140, 355
BsiSI CCGG 2 cut(s) 66, 502
BslI CCNNNNNNNGG 4 cut(s) 71, 216, 222, 923
BsmAI GTCTC 4 cut(s) 386, 411, 730, 817
BsmI GAATGC 3 cut(s) 416, 454, 898
BsnI GGCC 2 cut(s) 215, 573
Bso31I GGTCTC 1 cut(s) 386
Bsp119I TTCGAA 1 cut(s) 488
Bsp1286I GDGCHC 3 cut(s) 140, 355, 657
BspACI CCGC 3 cut(s) 401, 884, 914
BspANI GGCC 2 cut(s) 215, 573
BspCNI CTCAG 3 cut(s) 145, 169, 583
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 1 cut(s) 654
BspQI GCTCTTC 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 652
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 2 cut(s) 755, 807
BssECI CCNNGG 2 cut(s) 210, 887
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 887
Bst2UI CCWGG 2 cut(s) 217, 848
Bst4CI ACNGT 2 cut(s) 854, 909
Bst6I CTCTTC 2 cut(s) 157, 955
BstACI GRCGYC 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 494
BstAPI GCANNNNNTGC 1 cut(s) 359
BstBI TTCGAA 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 571, 611
BstDEI CTNAG 5 cut(s) 132, 177, 444, 591, 711
BstDSI CCRYGG 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 878
BstF5I GGATG 4 cut(s) 264, 514, 673, 952
BstFNI CGCG 1 cut(s) 401
BstHHI GCGC 2 cut(s) 401, 454
BstMAI GTCTC 4 cut(s) 386, 411, 730, 817
BstMCI CGRYCG 1 cut(s) 856
BstMWI GCNNNNNNNGC 7 cut(s) 11, 281, 359, 449, 458, 575, 902
BstNI CCWGG 2 cut(s) 217, 848
BstPI GGTNACC 1 cut(s) 878
BstSCI CCNGG 4 cut(s) 64, 215, 501, 846
BstSLI GKGCMC 1 cut(s) 657
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 2 cut(s) 341, 757
BstV2I GAAGAC 1 cut(s) 932
BsuRI GGCC 2 cut(s) 215, 573
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 4 cut(s) 264, 514, 673, 952
BtsI GCAGTG 3 cut(s) 82, 438, 874
BtsIMutI CAGTG 6 cut(s) 82, 302, 438, 588, 618, 874
Cac8I GCNNGC 2 cut(s) 571, 611
CfoI GCGC 2 cut(s) 401, 454
Cfr13I GGNCC 2 cut(s) 572, 774
CseI GACGC 2 cut(s) 100, 567
DdeI CTNAG 5 cut(s) 132, 177, 444, 591, 711
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 157, 955
EarI CTCTTC 2 cut(s) 157, 955
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 887
Eco24I GRGCYC 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 774
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 642
Eco91I GGTNACC 1 cut(s) 878
EcoICRI GAGCTC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 878
EcoRII CCWGG 2 cut(s) 215, 846
EcoT14I CCWWGG 1 cut(s) 887
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 887
FaiI YATR 5 cut(s) 429, 565, 834, 836, 875
FauI CCCGC 1 cut(s) 891
Fnu4HI GCNGC 2 cut(s) 330, 746
FokI GGATG 4 cut(s) 271, 521, 680, 959
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 330, 746
FspBI CTAG 3 cut(s) 204, 462, 552
FspI TGCGCA 1 cut(s) 453
GlaI GCGC 2 cut(s) 400, 453
GluI GCNGC 2 cut(s) 330, 746
HaeIII GGCC 2 cut(s) 215, 573
HapII CCGG 2 cut(s) 66, 502
HgaI GACGC 2 cut(s) 100, 567
HhaI GCGC 2 cut(s) 401, 454
Hin1I GRCGYC 1 cut(s) 92
Hin6I GCGC 2 cut(s) 399, 452
HinP1I GCGC 2 cut(s) 399, 452
HinfI GANTC 6 cut(s) 490, 593, 707, 738, 751, 821
HpaII CCGG 2 cut(s) 66, 502
HphI GGTGA 2 cut(s) 147, 669
Hpy188I TCNGA 4 cut(s) 135, 178, 258, 820
Hpy188III TCNNGA 3 cut(s) 348, 471, 944
Hpy99I CGWCG 2 cut(s) 94, 583
HpyAV CCTTC 3 cut(s) 41, 59, 617
HpyCH4III ACNGT 2 cut(s) 854, 909
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 6 cut(s) 116, 284, 329, 374, 416, 905
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 281, 359, 449, 458, 575, 902
HpyF3I CTNAG 5 cut(s) 132, 177, 444, 591, 711
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 92
HspAI GCGC 2 cut(s) 399, 452
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 25, 504
Lsp1109I GCAGC 2 cut(s) 341, 757
LweI GCATC 4 cut(s) 78, 190, 349, 396
MaeI CTAG 3 cut(s) 204, 462, 552
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 6 cut(s) 56, 85, 96, 701, 878, 909
MboII GAAGA 2 cut(s) 144, 932
MfeI CAATTG 2 cut(s) 320, 778
MhlI GDGCHC 3 cut(s) 140, 355, 657
MluCI AATT 5 cut(s) 187, 320, 369, 673, 778
MlyI GAGTC 4 cut(s) 602, 716, 732, 815
MnlI CCTC 9 cut(s) 51, 63, 134, 202, 469, 510, 536, 632, 826
MseI TTAA 7 cut(s) 26, 36, 111, 495, 600, 921, 967
MspA1I CMGCKG 1 cut(s) 748
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 2 cut(s) 66, 502
MspR9I CCNGG 4 cut(s) 66, 217, 503, 848
MunI CAATTG 2 cut(s) 320, 778
Mva1269I GAATGC 3 cut(s) 416, 454, 898
MvaI CCWGG 2 cut(s) 217, 848
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 7 cut(s) 11, 281, 359, 449, 458, 575, 902
NciI CCSGG 2 cut(s) 66, 503
NlaIV GGNNCC 1 cut(s) 654
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 2 cut(s) 96, 701
NsbI TGCGCA 1 cut(s) 453
NspV TTCGAA 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 157
PctI GAATGC 3 cut(s) 416, 454, 898
PfeI GAWTC 2 cut(s) 490, 751
PflFI GACNNNGTC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 331, 747
PleI GAGTC 4 cut(s) 601, 715, 732, 815
PpsI GAGTC 4 cut(s) 601, 715, 732, 815
PshBI ATTAAT 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 215, 846
PspEI GGTNACC 1 cut(s) 878
PspGI CCWGG 2 cut(s) 215, 846
PspN4I GGNNCC 1 cut(s) 654
PspPI GGNCC 2 cut(s) 572, 774
PsyI GACNNNGTC 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 748
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 7 cut(s) 26, 36, 111, 495, 600, 921, 967
SatI GCNGC 2 cut(s) 330, 746
Sau96I GGNCC 2 cut(s) 572, 774
SchI GAGTC 4 cut(s) 602, 716, 732, 815
ScrFI CCNGG 4 cut(s) 66, 217, 503, 848
SduI GDGCHC 3 cut(s) 140, 355, 657
SfaNI GCATC 4 cut(s) 78, 190, 349, 396
SfuI TTCGAA 1 cut(s) 488
SinI GGWCC 1 cut(s) 774
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 5 cut(s) 187, 320, 369, 673, 778
SsiI CCGC 3 cut(s) 401, 884, 914
SspMI CTAG 3 cut(s) 204, 462, 552
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 4 cut(s) 64, 215, 501, 846
StyI CCWWGG 1 cut(s) 887
TaaI ACNGT 2 cut(s) 854, 909
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 390, 488
TasI AATT 5 cut(s) 187, 320, 369, 673, 778
TfiI GAWTC 2 cut(s) 490, 751
Tru1I TTAA 7 cut(s) 26, 36, 111, 495, 600, 921, 967
Tru9I TTAA 7 cut(s) 26, 36, 111, 495, 600, 921, 967
TscAI CASTG 6 cut(s) 82, 309, 445, 595, 625, 874
TseFI GTSAC 2 cut(s) 96, 701
TseI GCWGC 2 cut(s) 329, 745
Tsp45I GTSAC 2 cut(s) 96, 701
TspDTI ATGAA 5 cut(s) 268, 525, 574, 711, 804
TspGWI ACGGA 2 cut(s) 241, 680
TspRI CASTG 6 cut(s) 82, 309, 445, 595, 625, 874
Tth111I GACNNNGTC 1 cut(s) 94
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 774
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 187
XspI CTAG 3 cut(s) 204, 462, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.