Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006996

Physical Location & Seq

Genomic Coordinates Forward (+)

14277922 .. 14279993

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAGTGCTTCGAAGTTCATAAAATGTGTTACTGTTGGAGATGGGGCTGTTGGGAAGACATGTATGCTTATCTGTTACACTAGCAACAAGTTTCCTACTGATTATATACCGACTGTGTTCGACAATTTCAGTGCCAATGTAGCTGTGGATGGACAAATCGTTAATTTAGGGCTATGGGACACTGCCGGTCAAGAAGATTACAGTAGGTTAAGACCATTGAGTTATAGAGGAGCTGATATCTTCGTCTTAGCCTTTTCGCTTATTAGCAAGGCGAGTTACGAAAATGTACTCAAGAAGTGGATGCCTGAACTTCGTCGGTTTGCGCCAAATGTTCCCATAGTTCTTGTTGGTACAAAGCTAGATCTCCGGGATGACAAGGGATACCTCGCGGATCACACCAATGTCATTACCTCTACTCAGGGAGAGGAATTGAGGAAGCAAATTGGTGCAGCTGCTTATATTGAGTGTAGTTCCAAGACTCAACAAAATGTGAAAGCAGTGTTTGATACAGCGATCAAGGTGGTTCTTCAGCCTCCAAGGAGGAAAGAGGTCCCGAGGAGGAGGAAGAATCATAGAAGATCCGGTTGCTCCATTGCGAGTATTGTCTGTGGAGGTTGCACCGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0019899 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

209

Amino Acids

23.04

Weight (kDa)

9.36

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 176	7.6e-51	Ras family
Roc	PF08477	8 - 121	5.4e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28950
fragaria_vesca	FvH4_1g05470
malus_domestica	MD02G1062800.v1.1 MD15G1190600.v1.1
prunus_persica	Prupe.7G226500_v2.0.a1
pyrus_communis	pycom02g04300 pycom15g17080
rosa_chinensis	RchiOBHm_Chr1g0336361 RchiOBHm_Chr2g0091151 RchiOBHm_Chr2g0104461 RchiOBHm_Chr2g0173521 RchiOBHm_Chr3g0493291
rosa_laevigata	RLG00000016186
rosa_multiflora	Rmu_sc0004311.1_g000035 Rmu_sc0031332.1_g000001 Rmu_ssc0000446.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150490
rosa_rugosa	Rorug02G0013800
rosa_samantha	Rh2AG059700 Rh2BG058400 Rh2CG060200 Rh2CG175500 Rh2DG059000 Rh3AG309100
rosa_wichuraiana	Rw2G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	389
AciI	CCGC	2 cut(s)	389, 621
AclWI	GGATC	2 cut(s)	399, 573
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	2 cut(s)	288, 352
AflIII	ACRYGT	1 cut(s)	59
AluBI	AGCT	4 cut(s)	143, 233, 358, 452
AluI	AGCT	4 cut(s)	143, 233, 358, 452
AlwI	GGATC	2 cut(s)	399, 573
Ama87I	CYCGRG	1 cut(s)	553
ApeKI	GCWGC	3 cut(s)	449, 452, 623
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	550
AsuC2I	CCSGG	1 cut(s)	368
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	439, 461, 610
BccI	CCATC	2 cut(s)	35, 143
BciVI	GTATCC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	368
BfaI	CTAG	2 cut(s)	81, 359
BfuI	GTATCC	1 cut(s)	374
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	3 cut(s)	450, 453, 624
BlsI	GCNGC	3 cut(s)	451, 454, 625
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	550
BmeT110I	CYCGRG	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	536, 554
BsaWI	WCCGGW	1 cut(s)	581
Bse118I	RCCGGY	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	591
BseDI	CCNNGG	2 cut(s)	536, 554
BseGI	GGATG	3 cut(s)	154, 306, 376
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	431
BseRI	GAGGAG	3 cut(s)	243, 571, 574
BseXI	GCAGC	3 cut(s)	439, 461, 610
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	553
BsiSI	CCGG	3 cut(s)	186, 367, 582
BslFI	GGGAC	2 cut(s)	191, 536
BsmFI	GGGAC	2 cut(s)	191, 536
BsoBI	CYCGRG	1 cut(s)	553
Bsp119I	TTCGAA	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	361, 391, 513, 578
BspACI	CCGC	2 cut(s)	389, 621
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	389
BspLI	GGNNCC	1 cut(s)	552
BspPI	GGATC	2 cut(s)	399, 573
BspT104I	TTCGAA	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	536, 554
BssMI	GATC	4 cut(s)	361, 391, 513, 578
BssT1I	CCWWGG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	34, 115, 203
BstBI	TTCGAA	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	247, 417
BstF5I	GGATG	3 cut(s)	154, 306, 376
BstFNI	CGCG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	4 cut(s)	364, 394, 516, 581
BstMBI	GATC	4 cut(s)	361, 391, 513, 578
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	439, 461, 610
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	361, 578
BstYI	RGATCY	2 cut(s)	361, 578
BsuI	GTATCC	1 cut(s)	374
BtsCI	GGATG	3 cut(s)	154, 306, 376
BtsI	GCAGTG	2 cut(s)	180, 504
BtsIMutI	CAGTG	3 cut(s)	136, 180, 504
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	287, 351
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	8 cut(s)	47, 143, 172, 233, 251, 358, 452, 532
CviKI_1	RGCY	8 cut(s)	47, 143, 172, 233, 251, 358, 452, 532
CviQI	GTAC	2 cut(s)	287, 351
DdeI	CTNAG	2 cut(s)	247, 417
DpnI	GATC	4 cut(s)	363, 393, 515, 580
DpnII	GATC	4 cut(s)	361, 391, 513, 578
Eco130I	CCWWGG	1 cut(s)	536
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	1 cut(s)	63
FaqI	GGGAC	2 cut(s)	191, 536
FatI	CATG	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	450, 453, 624
FokI	GGATG	3 cut(s)	161, 313, 383
Fsp4HI	GCNGC	3 cut(s)	450, 453, 624
FspBI	CTAG	2 cut(s)	81, 359
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	3 cut(s)	450, 453, 624
HapII	CCGG	3 cut(s)	186, 367, 582
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	2 cut(s)	478, 568
HpaII	CCGG	3 cut(s)	186, 367, 582
Hpy188III	TCNNGA	3 cut(s)	191, 292, 553
Hpy99I	CGWCG	1 cut(s)	318
HpyCH4III	ACNGT	3 cut(s)	34, 115, 203
HpyCH4V	TGCA	2 cut(s)	449, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	247, 417
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	361, 391, 513, 578
LmnI	GCTCC	2 cut(s)	230, 593
LpnPI	CCDG	5 cut(s)	199, 318, 380, 404, 595
Lsp1109I	GCAGC	3 cut(s)	439, 461, 610
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	81, 359
MaeIII	GTNAC	3 cut(s)	28, 74, 275
MalI	GATC	4 cut(s)	363, 393, 515, 580
MboI	GATC	4 cut(s)	361, 391, 513, 578
MboII	GAAGA	6 cut(s)	67, 206, 232, 518, 577, 588
MflI	RGATCY	2 cut(s)	361, 578
MluCI	AATT	4 cut(s)	124, 163, 428, 441
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	16
MseI	TTAA	3 cut(s)	162, 209, 628
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	2 cut(s)	452, 623
MspI	CCGG	3 cut(s)	186, 367, 582
MspR9I	CCNGG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	4 cut(s)	361, 391, 513, 578
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	552
NspI	RCATGY	1 cut(s)	63
NspV	TTCGAA	1 cut(s)	11
PciI	ACATGT	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	568
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	451, 454, 625
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	550
PscI	ACATGT	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	550
PspPPI	RGGWCCY	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	361, 578
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	288, 352
RsaNI	GTAC	2 cut(s)	287, 351
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	162, 209, 628
SatI	GCNGC	3 cut(s)	450, 453, 624
Sau3AI	GATC	4 cut(s)	361, 391, 513, 578
Sau96I	GGNCC	1 cut(s)	550
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	368
SfaNI	GCATC	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	11
SinI	GGWCC	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	124, 163, 428, 441
SsiI	CCGC	2 cut(s)	389, 621
SspMI	CTAG	2 cut(s)	81, 359
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	3 cut(s)	34, 115, 203
TaqI	TCGA	2 cut(s)	11, 120
TasI	AATT	4 cut(s)	124, 163, 428, 441
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	3 cut(s)	162, 209, 628
Tru9I	TTAA	3 cut(s)	162, 209, 628
TscAI	CASTG	3 cut(s)	136, 187, 504
TseI	GCWGC	3 cut(s)	449, 452, 623
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	3 cut(s)	136, 187, 504
VpaK11BI	GGWCC	1 cut(s)	550
XceI	RCATGY	1 cut(s)	63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XspI	CTAG	2 cut(s)	81, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.