Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006996

Physical Location & Seq

Genomic Coordinates Reverse (-)

5028006 .. 5030862

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1062800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAGTGTTTCTAAGTTCATTAAATGTGTCACTGTTGGTGATGGAGCTGTTGGGAAGACCTGTATGCTCATTTGTTACACCAGCAACAAGTTTCCCACTGATTATGTACCAACAGTTTTTGACAATTTTAGTGCAAATGTTGCTGTTGATGGGAACATAGTGAACCTGGGGCTATGGGACACTGCAGGCCAGGAGGATTACAGCAGGTTGAGGCCACTGAGTTATAGAGGTGCAGACATATTTGTGTTAGCTTTCTCCTTAATTAGTAGGGCAAGCTATGAGAATGTTCTTAAGAAGTGGATGCCGGAACTTCGTAGGTTTGCTCCCAATGTTCCGATTGTTCTTGTTGGGACAAAGCTAGATCTTCGTGAGGACATGGGGTACCTAGCTGATCATATGGGATCATCCAACATCATAACTTCTGCTCAGGGTGAGGAGCTGAGAAAGCAAGTAGGTGCTGCAGCTTATATCGAGTGCAGCTCGAAGACTCAGCAGAATGTCAAAGCTGTTTTCGATACTGCCATTAAGGTTGTTCTTCAACCTCCGAGAAGGAAGGATGTGGCTCAGAAGAAAAGGCACCGGAGATCTGCTTGCTTAATTGCAAGCATTGTGTGTGGAGGCTGTGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0019899 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

211

Amino Acids

23.12

Weight (kDa)

9.07

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 179	4.9e-50	Ras family
Roc	PF08477	8 - 121	7e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28950
fragaria_vesca	FvH4_1g05470
malus_domestica	MD02G1062800.v1.1 MD15G1190600.v1.1
prunus_persica	Prupe.7G226500_v2.0.a1
pyrus_communis	pycom02g04300 pycom15g17080
rosa_chinensis	RchiOBHm_Chr1g0336361 RchiOBHm_Chr2g0091151 RchiOBHm_Chr2g0104461 RchiOBHm_Chr2g0173521 RchiOBHm_Chr3g0493291
rosa_laevigata	RLG00000016186
rosa_multiflora	Rmu_sc0004311.1_g000035 Rmu_sc0031332.1_g000001 Rmu_ssc0000446.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150490
rosa_rugosa	Rorug02G0013800
rosa_samantha	Rh2AG059700 Rh2BG058400 Rh2CG060200 Rh2CG175500 Rh2DG059000 Rh3AG309100
rosa_wichuraiana	Rw2G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	195
Acc65I	GGTACC	1 cut(s)	381
AccB1I	GGYRCC	2 cut(s)	381, 576
AclWI	GGATC	1 cut(s)	409
AfaI	GTAC	2 cut(s)	108, 383
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	539
AjnI	CCWGG	2 cut(s)	165, 189
AluBI	AGCT	9 cut(s)	47, 251, 276, 358, 389, 439, 464, 480, 506
AluI	AGCT	9 cut(s)	47, 251, 276, 358, 389, 439, 464, 480, 506
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	2 cut(s)	187, 212
ApeKI	GCWGC	3 cut(s)	458, 461, 477
Asp718I	GGTACC	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	50, 443
BanI	GGYRCC	2 cut(s)	381, 576
BbsI	GAAGAC	2 cut(s)	62, 491
BbvI	GCAGC	3 cut(s)	445, 473, 489
BccI	CCATC	2 cut(s)	35, 143
BciT130I	CCWGG	2 cut(s)	167, 191
BclI	TGATCA	1 cut(s)	391
BfaI	CTAG	3 cut(s)	359, 386, 631
BfmI	CTRYAG	2 cut(s)	183, 459
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	195
BglII	AGATCT	2 cut(s)	361, 584
BisI	GCNGC	3 cut(s)	459, 462, 478
BlsI	GCNGC	3 cut(s)	460, 463, 479
Bme1390I	CCNGG	2 cut(s)	167, 191
BmiI	GGNNCC	2 cut(s)	383, 578
BmrFI	CCNGG	2 cut(s)	167, 191
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	62, 491
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
Bpu10I	CCTNAGC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	167, 191
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	306, 404, 562
BseMII	CTCAG	5 cut(s)	209, 431, 440, 503, 578
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	445, 473, 489
BsgI	GTGCAG	2 cut(s)	252, 496
BshFI	GGCC	2 cut(s)	189, 214
BshNI	GGYRCC	2 cut(s)	381, 576
BsiSI	CCGG	2 cut(s)	305, 580
BslFI	GGGAC	2 cut(s)	191, 364
BsmFI	GGGAC	2 cut(s)	191, 364
BsnI	GGCC	2 cut(s)	189, 214
Bsp143I	GATC	4 cut(s)	361, 391, 401, 584
BspANI	GGCC	2 cut(s)	189, 214
BspCNI	CTCAG	5 cut(s)	210, 432, 439, 502, 577
BspLI	GGNNCC	2 cut(s)	383, 578
BspMAI	CTGCAG	2 cut(s)	187, 463
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	2 cut(s)	381, 576
BspTI	CTTAAG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	4 cut(s)	361, 391, 401, 584
Bst2UI	CCWGG	2 cut(s)	167, 191
Bst4CI	ACNGT	2 cut(s)	34, 115
BstAFI	CTTAAG	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	4 cut(s)	187, 274, 592, 604
BstDEI	CTNAG	6 cut(s)	12, 218, 426, 440, 489, 564
BstF5I	GGATG	3 cut(s)	306, 404, 562
BstKTI	GATC	4 cut(s)	364, 394, 404, 587
BstMBI	GATC	4 cut(s)	361, 391, 401, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 445
BstNI	CCWGG	2 cut(s)	167, 191
BstSCI	CCNGG	2 cut(s)	165, 189
BstSFI	CTRYAG	2 cut(s)	183, 459
BstV1I	GCAGC	3 cut(s)	445, 473, 489
BstV2I	GAAGAC	2 cut(s)	62, 491
BstX2I	RGATCY	2 cut(s)	361, 584
BstYI	RGATCY	2 cut(s)	361, 584
BsuRI	GGCC	2 cut(s)	189, 214
BtsCI	GGATG	3 cut(s)	306, 404, 562
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	4 cut(s)	30, 96, 180, 215
BveI	ACCTGC	1 cut(s)	195
Cac8I	GCNNGC	4 cut(s)	187, 274, 592, 604
Csp6I	GTAC	2 cut(s)	107, 382
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	2 cut(s)	107, 382
DdeI	CTNAG	6 cut(s)	12, 218, 426, 440, 489, 564
DpnI	GATC	4 cut(s)	363, 393, 403, 586
DpnII	GATC	4 cut(s)	361, 391, 401, 584
EcoRII	CCWGG	2 cut(s)	165, 189
FaeI	CATG	1 cut(s)	379
FaqI	GGGAC	2 cut(s)	191, 364
FatI	CATG	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	459, 462, 478
FokI	GGATG	3 cut(s)	313, 391, 569
Fsp4HI	GCNGC	3 cut(s)	459, 462, 478
FspBI	CTAG	3 cut(s)	359, 386, 631
GluI	GCNGC	3 cut(s)	459, 462, 478
HaeIII	GGCC	2 cut(s)	189, 214
HapII	CCGG	2 cut(s)	305, 580
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	1 cut(s)	487
HpaII	CCGG	2 cut(s)	305, 580
HphI	GGTGA	2 cut(s)	50, 443
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	336, 546, 567
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	543, 547
HpyCH4III	ACNGT	2 cut(s)	34, 115
HpyCH4V	TGCA	6 cut(s)	134, 185, 233, 461, 477, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 445
HpyF3I	CTNAG	6 cut(s)	12, 218, 426, 440, 489, 564
Hsp92II	CATG	1 cut(s)	379
KpnI	GGTACC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	361, 391, 401, 584
LmnI	GCTCC	3 cut(s)	44, 328, 436
Lsp1109I	GCAGC	3 cut(s)	445, 473, 489
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	3 cut(s)	359, 386, 631
MaeIII	GTNAC	2 cut(s)	28, 74
MalI	GATC	4 cut(s)	363, 393, 403, 586
MboI	GATC	4 cut(s)	361, 391, 401, 584
MboII	GAAGA	5 cut(s)	67, 356, 496, 527, 580
MflI	RGATCY	2 cut(s)	361, 584
MluCI	AATT	3 cut(s)	124, 261, 597
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	7 cut(s)	187, 204, 221, 364, 427, 552, 611
MseI	TTAA	5 cut(s)	21, 260, 291, 525, 596
MslI	CAYNNNNRTG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	2 cut(s)	305, 580
MspR9I	CCNGG	2 cut(s)	167, 191
MvaI	CCWGG	2 cut(s)	167, 191
MwoI	GCNNNNNNNGC	2 cut(s)	140, 445
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	4 cut(s)	361, 391, 401, 584
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	383, 578
NmuCI	GTSAC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	460, 463, 479
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Psp6I	CCWGG	2 cut(s)	165, 189
PspGI	CCWGG	2 cut(s)	165, 189
PspN4I	GGNNCC	2 cut(s)	383, 578
PstI	CTGCAG	2 cut(s)	187, 463
PsuI	RGATCY	2 cut(s)	361, 584
RsaI	GTAC	2 cut(s)	108, 383
RsaNI	GTAC	2 cut(s)	107, 382
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	5 cut(s)	21, 260, 291, 525, 596
SatI	GCNGC	3 cut(s)	459, 462, 478
Sau3AI	GATC	4 cut(s)	361, 391, 401, 584
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	167, 191
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	2 cut(s)	183, 459
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	124, 261, 597
SspMI	CTAG	3 cut(s)	359, 386, 631
StyD4I	CCNGG	2 cut(s)	165, 189
TaaI	ACNGT	2 cut(s)	34, 115
TaqI	TCGA	3 cut(s)	471, 482, 513
TasI	AATT	3 cut(s)	124, 261, 597
Tru1I	TTAA	5 cut(s)	21, 260, 291, 525, 596
Tru9I	TTAA	5 cut(s)	21, 260, 291, 525, 596
TscAI	CASTG	4 cut(s)	37, 103, 187, 222
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	458, 461, 477
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	4 cut(s)	37, 103, 187, 222
Vha464I	CTTAAG	1 cut(s)	290
XspI	CTAG	3 cut(s)	359, 386, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.