FvH4_1g05470
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
2888514 .. 2890784
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05470.t1

Sequence Viewer

Length: 630 bp
ATGAGTGCTTCAAAGTTCATTAAATGTGTTACTGTTGGGGATGGAGCTGTGGGGAAGACCTGTATGCTAATTTGCTACACCAGCAACAAGTTTCCTACTGATTATATACCCACAGTGTTTGACAATTTCAGTGCAAATGTGGCTGTGGATGGGAATATTGTCAATTTGGGGTTATGGGACACTGCAGGTCAGGAGGACTACAGCAGGTTGAGGCCACTAAGTTACAGAGGTGCAGATATATTTGTGTTGGCTTTCTCTCTAATTAGTAGGGCAAGCTATGAGAATGTTCTTAAGAAGTGGATGCCAGAACTTCGGCGATTTGCACCTAATGTTCCAATTGTCCTTGTTGGGACAAAGCTTGATCTTCGTGACGACATGCGCTGTCTAGCTGATCATATGGGATCCAACATCATAACTTCTGCTCAGGGAGAGGAGTTGAGAAAGCAAATAGGAGCTGCAGCTTATATTGAGTGCAGTTCTAAGACCCAACAGAATGTCAAAGCGGTGTTTGATACCGCCATCAAGGCTGTTCTTCAACCTCCAAGAAGGAAGGATATGGTTAAGCAGAAAAGGCACCGAAGATCTGGTTGTTCAATTGTGAGCATTGTCTGTGGAGGATGTGATGTGTAG

Protein Analysis

210

Amino Acids

23.08

Weight (kDa)

9.13

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 1.1e-50 Ras family
Roc PF08477 8 - 121 5.9e-23 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 176, 195
AccB1I GGYRCC 1 cut(s) 573
AciI CCGC 2 cut(s) 503, 516
AclWI GGATC 2 cut(s) 396, 409
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 12, 536, 594
AluBI AGCT 6 cut(s) 47, 276, 358, 389, 455, 461
AluI AGCT 6 cut(s) 47, 276, 358, 389, 455, 461
AlwI GGATC 2 cut(s) 396, 409
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 455, 458
AspLEI GCGC 1 cut(s) 381
BamHI GGATCC 1 cut(s) 401
BanI GGYRCC 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 442, 470
BccI CCATC 3 cut(s) 35, 143, 527
BclI TGATCA 1 cut(s) 391
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 3 cut(s) 183, 199, 456
BfrI CTTAAG 1 cut(s) 290
BfuAI ACCTGC 2 cut(s) 176, 195
BglI GCCNNNNNGGC 1 cut(s) 524
BglII AGATCT 1 cut(s) 581
BisI GCNGC 2 cut(s) 456, 459
BlsI GCNGC 2 cut(s) 457, 460
BmiI GGNNCC 2 cut(s) 403, 575
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 423
BseGI GGATG 4 cut(s) 46, 154, 306, 623
BseMII CTCAG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 2 cut(s) 442, 470
BsgI GTGCAG 2 cut(s) 252, 493
BshFI GGCC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 573
BslFI GGGAC 2 cut(s) 191, 364
BsmFI GGGAC 2 cut(s) 191, 364
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 4 cut(s) 361, 391, 401, 581
BspACI CCGC 2 cut(s) 503, 516
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 403, 575
BspMAI CTGCAG 2 cut(s) 187, 460
BspMI ACCTGC 2 cut(s) 176, 195
BspPI GGATC 2 cut(s) 396, 409
BspT107I GGYRCC 1 cut(s) 573
BspTI CTTAAG 1 cut(s) 290
BssMI GATC 4 cut(s) 361, 391, 401, 581
Bst4CI ACNGT 2 cut(s) 34, 115
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 3 cut(s) 218, 423, 480
BstF5I GGATG 4 cut(s) 46, 154, 306, 623
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 4 cut(s) 364, 394, 404, 584
BstMBI GATC 4 cut(s) 361, 391, 401, 581
BstMWI GCNNNNNNNGC 4 cut(s) 81, 140, 524, 571
BstNSI RCATGY 1 cut(s) 379
BstSFI CTRYAG 3 cut(s) 183, 199, 456
BstV1I GCAGC 2 cut(s) 442, 470
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 2 cut(s) 401, 581
BstYI RGATCY 2 cut(s) 401, 581
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 4 cut(s) 46, 154, 306, 623
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 3 cut(s) 120, 136, 180
BveI ACCTGC 2 cut(s) 176, 195
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 381
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 1 cut(s) 376
DdeI CTNAG 3 cut(s) 218, 423, 480
DpnI GATC 4 cut(s) 363, 393, 403, 583
DpnII GATC 4 cut(s) 361, 391, 401, 581
FaeI CATG 1 cut(s) 379
FaqI GGGAC 2 cut(s) 191, 364
FatI CATG 1 cut(s) 375
FauNDI CATATG 1 cut(s) 396
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 456, 459
FokI GGATG 3 cut(s) 53, 161, 313
Fsp4HI GCNGC 2 cut(s) 456, 459
FspBI CTAG 1 cut(s) 386
GlaI GCGC 1 cut(s) 380
GluI GCNGC 2 cut(s) 456, 459
HaeIII GGCC 1 cut(s) 214
HhaI GCGC 1 cut(s) 381
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 356
Hpy188III TCNNGA 2 cut(s) 191, 368
HpyAV CCTTC 2 cut(s) 540, 544
HpyCH4III ACNGT 2 cut(s) 34, 115
HpyCH4V TGCA 6 cut(s) 134, 185, 233, 323, 458, 474
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 140, 524, 571
HpyF3I CTNAG 3 cut(s) 218, 423, 480
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 4 cut(s) 361, 391, 401, 581
LmnI GCTCC 2 cut(s) 44, 452
LpnPI CCDG 8 cut(s) 73, 94, 171, 176, 190, 318, 410, 570
Lsp1109I GCAGC 2 cut(s) 442, 470
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 3 cut(s) 28, 221, 368
MalI GATC 4 cut(s) 363, 393, 403, 583
MboI GATC 4 cut(s) 361, 391, 401, 581
MboII GAAGA 4 cut(s) 67, 356, 524, 591
MfeI CAATTG 2 cut(s) 336, 594
MflI RGATCY 2 cut(s) 401, 581
MluCI AATT 6 cut(s) 69, 124, 163, 261, 336, 594
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 6 cut(s) 187, 204, 221, 424, 549, 608
MseI TTAA 3 cut(s) 21, 291, 561
MspCI CTTAAG 1 cut(s) 290
MunI CAATTG 2 cut(s) 336, 594
MwoI GCNNNNNNNGC 4 cut(s) 81, 140, 524, 571
NdeI CATATG 1 cut(s) 396
NdeII GATC 4 cut(s) 361, 391, 401, 581
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 2 cut(s) 403, 575
NmuCI GTSAC 1 cut(s) 368
NspI RCATGY 1 cut(s) 379
PkrI GCNGC 2 cut(s) 457, 460
PspN4I GGNNCC 2 cut(s) 403, 575
PstI CTGCAG 2 cut(s) 187, 460
PsuI RGATCY 2 cut(s) 401, 581
SaqAI TTAA 3 cut(s) 21, 291, 561
SatI GCNGC 2 cut(s) 456, 459
Sau3AI GATC 4 cut(s) 361, 391, 401, 581
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 3 cut(s) 183, 199, 456
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 6 cut(s) 69, 124, 163, 261, 336, 594
SsiI CCGC 2 cut(s) 503, 516
SspI AATATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 34, 115
TasI AATT 6 cut(s) 69, 124, 163, 261, 336, 594
Tru1I TTAA 3 cut(s) 21, 291, 561
Tru9I TTAA 3 cut(s) 21, 291, 561
TscAI CASTG 3 cut(s) 120, 136, 187
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 2 cut(s) 455, 458
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 3 cut(s) 120, 136, 187
Vha464I CTTAAG 1 cut(s) 290
XceI RCATGY 1 cut(s) 379
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.