Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006996

Physical Location & Seq

Genomic Coordinates Reverse (-)

11986027 .. 11988212

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAGTGCTTCAAAGTTCATTAAATGTGTCACAGTTGGAGATGGAGCTGTTGGGAAGACCTGTATGCTTATTTGTTACACCAGCAACAAGTTTCCTACCGATTATATACCCACAGTTTTTGACAATTTTAGTGCAAATGTGGCTGTGGATGGGAATATAGTGAACTTGGGGCTATGGGACACTGCAGGCCAGGAGGATTACAGCAGGTTGAGGCCGCTGAGTTATAGAGGTGCAGACATATTTGTGTTAGCTTTCTCTTTAATTAGCAGGCCAAGCTATGAGAATGTTCTTAAGAAGTGGATGCCGGAACTTCGTAGGTTTGCTCCCAATGTTCCAATTGTTCTTGTTGGTACAAAGCTAGATCTTCGCGAGGACATGGGGTATCTAGCCGATCATATGGGATCCAACATCATAACTTCTGCTCAGGGAGAGGAGCTGAGAAAACAAATAGGTGCTGCAGCTTATATCGAGTGCAGCTCGAAGACCCAGCAGAATGTCAAAGCTGTTTTCGATACTGCCATTAAGGTTGTTCTTCAACCTCCGAGAAGGAAGGATATGGCTAAGAAGAAAAGGCACCAGAGATCTGCTTGCTCAATTGCGAGCATTGTCTGTGGAGGCTGTGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0019899 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

210

Amino Acids

23.04

Weight (kDa)

9.06

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28950
fragaria_vesca	FvH4_1g05470
malus_domestica	MD02G1062800.v1.1 MD15G1190600.v1.1
prunus_persica	Prupe.7G226500_v2.0.a1
pyrus_communis	pycom02g04300 pycom15g17080
rosa_chinensis	RchiOBHm_Chr1g0336361 RchiOBHm_Chr2g0091151 RchiOBHm_Chr2g0104461 RchiOBHm_Chr2g0173521 RchiOBHm_Chr3g0493291
rosa_laevigata	RLG00000016186
rosa_multiflora	Rmu_sc0004311.1_g000035 Rmu_sc0031332.1_g000001 Rmu_ssc0000446.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150490
rosa_rugosa	Rorug02G0013800
rosa_samantha	Rh2AG059700 Rh2BG058400 Rh2CG060200 Rh2CG175500 Rh2DG059000 Rh3AG309100
rosa_wichuraiana	Rw2G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	573
AccII	CGCG	1 cut(s)	369
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	2 cut(s)	396, 409
AfaI	GTAC	1 cut(s)	352
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	12, 536
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	8 cut(s)	47, 251, 276, 358, 436, 461, 477, 503
AluI	AGCT	8 cut(s)	47, 251, 276, 358, 436, 461, 477, 503
AlwI	GGATC	2 cut(s)	396, 409
AoxI	GGCC	3 cut(s)	187, 212, 269
ApeKI	GCWGC	3 cut(s)	455, 458, 474
BamHI	GGATCC	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	573
BbsI	GAAGAC	2 cut(s)	62, 488
BbvI	GCAGC	3 cut(s)	442, 470, 486
BccI	CCATC	2 cut(s)	35, 143
BciT130I	CCWGG	1 cut(s)	191
BfaI	CTAG	2 cut(s)	359, 386
BfmI	CTRYAG	2 cut(s)	183, 456
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	195
BglII	AGATCT	2 cut(s)	361, 581
BisI	GCNGC	4 cut(s)	215, 456, 459, 475
BlsI	GCNGC	4 cut(s)	216, 457, 460, 476
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	403, 575
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	62, 488
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
Bpu10I	CCTNAGC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	154, 306
BseMII	CTCAG	3 cut(s)	209, 428, 437
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	442, 470, 486
BseYI	CCCAGC	1 cut(s)	486
BsgI	GTGCAG	2 cut(s)	252, 493
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	189, 214, 271
BshNI	GGYRCC	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	189, 214, 271
Bsp143I	GATC	4 cut(s)	361, 391, 401, 581
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	3 cut(s)	189, 214, 271
BspCNI	CTCAG	3 cut(s)	210, 429, 436
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	403, 575
BspMAI	CTGCAG	2 cut(s)	187, 460
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	396, 409
BspT107I	GGYRCC	1 cut(s)	573
BspTI	CTTAAG	1 cut(s)	290
BssMI	GATC	4 cut(s)	361, 391, 401, 581
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	34, 115
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	4 cut(s)	187, 269, 589, 601
BstDEI	CTNAG	4 cut(s)	218, 423, 437, 561
BstF5I	GGATG	2 cut(s)	154, 306
BstFNI	CGCG	1 cut(s)	369
BstKTI	GATC	4 cut(s)	364, 394, 404, 584
BstMBI	GATC	4 cut(s)	361, 391, 401, 581
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 273
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	2 cut(s)	183, 456
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	442, 470, 486
BstV2I	GAAGAC	2 cut(s)	62, 488
BstX2I	RGATCY	3 cut(s)	361, 401, 581
BstYI	RGATCY	3 cut(s)	361, 401, 581
BsuRI	GGCC	3 cut(s)	189, 214, 271
BtsCI	GGATG	2 cut(s)	154, 306
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
BtuMI	TCGCGA	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	195
Cac8I	GCNNGC	4 cut(s)	187, 269, 589, 601
Csp6I	GTAC	1 cut(s)	351
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	4 cut(s)	218, 423, 437, 561
DpnI	GATC	4 cut(s)	363, 393, 403, 583
DpnII	GATC	4 cut(s)	361, 391, 401, 581
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	379
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	396
Fnu4HI	GCNGC	4 cut(s)	215, 456, 459, 475
FokI	GGATG	2 cut(s)	161, 313
Fsp4HI	GCNGC	4 cut(s)	215, 456, 459, 475
FspBI	CTAG	2 cut(s)	359, 386
GluI	GCNGC	4 cut(s)	215, 456, 459, 475
GsaI	CCCAGC	1 cut(s)	490
HaeIII	GGCC	3 cut(s)	189, 214, 271
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	1 cut(s)	379
HpaII	CCGG	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	540, 544
HpyCH4III	ACNGT	2 cut(s)	34, 115
HpyCH4V	TGCA	5 cut(s)	134, 185, 233, 458, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 273
HpyF3I	CTNAG	4 cut(s)	218, 423, 437, 561
Hsp92II	CATG	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	361, 391, 401, 581
LmnI	GCTCC	3 cut(s)	44, 328, 433
Lsp1109I	GCAGC	3 cut(s)	442, 470, 486
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	359, 386
MaeIII	GTNAC	2 cut(s)	28, 74
MalI	GATC	4 cut(s)	363, 393, 403, 583
MboI	GATC	4 cut(s)	361, 391, 401, 581
MboII	GAAGA	5 cut(s)	67, 356, 493, 524, 577
MfeI	CAATTG	2 cut(s)	336, 594
MflI	RGATCY	3 cut(s)	361, 401, 581
MluCI	AATT	4 cut(s)	124, 261, 336, 594
MmeI	TCCRAC	2 cut(s)	16, 429
MnlI	CCTC	7 cut(s)	187, 204, 221, 364, 424, 549, 608
MseI	TTAA	4 cut(s)	21, 260, 291, 522
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	217
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	2 cut(s)	336, 594
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	140, 273
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	4 cut(s)	361, 391, 401, 581
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	403, 575
NmuCI	GTSAC	1 cut(s)	28
NruI	TCGCGA	1 cut(s)	369
PkrI	GCNGC	4 cut(s)	216, 457, 460, 476
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	403, 575
PstI	CTGCAG	2 cut(s)	187, 460
PsuI	RGATCY	3 cut(s)	361, 401, 581
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	4 cut(s)	21, 260, 291, 522
SatI	GCNGC	4 cut(s)	215, 456, 459, 475
Sau3AI	GATC	4 cut(s)	361, 391, 401, 581
ScrFI	CCNGG	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	2 cut(s)	183, 456
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	124, 261, 336, 594
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	2 cut(s)	359, 386
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	34, 115
TaqI	TCGA	3 cut(s)	468, 479, 510
TasI	AATT	4 cut(s)	124, 261, 336, 594
TauI	GCSGC	1 cut(s)	217
Tru1I	TTAA	4 cut(s)	21, 260, 291, 522
Tru9I	TTAA	4 cut(s)	21, 260, 291, 522
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	455, 458, 474
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	290
XspI	CTAG	2 cut(s)	359, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.