Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000446.1

Orthogroup ID

OG0006996

Physical Location & Seq

Genomic Coordinates Forward (+)

44719 .. 47156

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000446.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgtggcaggattatatacccacagtgtttgacaattttagtgcaaatgtggctgtggatggaaatattgtcaatttggggctatgggacactgcaggtcaggaggactacagcaggttgaggccactaagttacagaggtgcagatatatttgtgttggctttctctctaattagtagagctagctatgagaatgttcttaagaagtggatgccagaacttcgccgatttgcgcctaatgttccaattgtccttgttgggacaaagcttgatcttcgtgaggacatgcactatctagctgatcatatgggatcgaacatcataacttctgctcagggagaggagttaagaaagcaaataggagccgcagcttatattgaatgcagctctaagacccaacagaatgtcaaagcggtgtttgacactgccatcaaggctgttcttcaacctccaagaaggaaggatatagttaagcagaaaaggcaccgaaggtctggttgctcatttgtgtcttctaggcattttcgatatacttggagacagttgcaattattccacaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0019899 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

187

Amino Acids

21.53

Weight (kDa)

9.66

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28950
fragaria_vesca	FvH4_1g05470
malus_domestica	MD02G1062800.v1.1 MD15G1190600.v1.1
prunus_persica	Prupe.7G226500_v2.0.a1
pyrus_communis	pycom02g04300 pycom15g17080
rosa_chinensis	RchiOBHm_Chr1g0336361 RchiOBHm_Chr2g0091151 RchiOBHm_Chr2g0104461 RchiOBHm_Chr2g0173521 RchiOBHm_Chr3g0493291
rosa_laevigata	RLG00000016186
rosa_multiflora	Rmu_sc0004311.1_g000035 Rmu_sc0031332.1_g000001 Rmu_ssc0000446.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150490
rosa_rugosa	Rorug02G0013800
rosa_samantha	Rh2AG059700 Rh2BG058400 Rh2CG060200 Rh2CG175500 Rh2DG059000 Rh3AG309100
rosa_wichuraiana	Rw2G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	86, 105
AccB1I	GGYRCC	1 cut(s)	483
AciI	CCGC	2 cut(s)	366, 413
AclWI	GGATC	1 cut(s)	319
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	380, 446
AluBI	AGCT	6 cut(s)	182, 186, 268, 299, 371, 387
AluI	AGCT	6 cut(s)	182, 186, 268, 299, 371, 387
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	368, 384
AspLEI	GCGC	1 cut(s)	235
AsuNHI	GCTAGC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	380, 396
BccI	CCATC	2 cut(s)	53, 437
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	3 cut(s)	183, 296, 516
BfmI	CTRYAG	2 cut(s)	93, 109
BfrI	CTTAAG	1 cut(s)	200
BfuAI	ACCTGC	2 cut(s)	86, 105
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	3 cut(s)	366, 369, 385
BlsI	GCNGC	3 cut(s)	367, 370, 386
BmiI	GGNNCC	2 cut(s)	364, 485
BmsI	GCATC	1 cut(s)	201
BmtI	GCTAGC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	333
BseGI	GGATG	2 cut(s)	64, 216
BseMII	CTCAG	1 cut(s)	347
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	380, 396
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	483
BslFI	GGGAC	2 cut(s)	101, 274
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	2 cut(s)	101, 274
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	271, 301, 311
BspACI	CCGC	2 cut(s)	366, 413
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	364, 485
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	2 cut(s)	86, 105
BspOI	GCTAGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	483
BspTI	CTTAAG	1 cut(s)	200
BssMI	GATC	3 cut(s)	271, 301, 311
Bst4CI	ACNGT	2 cut(s)	25, 543
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	128, 333, 390
BstF5I	GGATG	2 cut(s)	64, 216
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	3 cut(s)	274, 304, 314
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	3 cut(s)	271, 301, 311
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 434, 481
BstNSI	RCATGY	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	93, 109
BstV1I	GCAGC	2 cut(s)	380, 396
BstV2I	GAAGAC	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	64, 216
BtsI	GCAGTG	2 cut(s)	90, 423
BtsIMutI	CAGTG	3 cut(s)	30, 90, 423
BveI	ACCTGC	2 cut(s)	86, 105
Cac8I	GCNNGC	1 cut(s)	184
CfoI	GCGC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	128, 333, 390
DpnI	GATC	3 cut(s)	273, 303, 313
DpnII	GATC	3 cut(s)	271, 301, 311
FaeI	CATG	1 cut(s)	289
FaqI	GGGAC	2 cut(s)	101, 274
FatI	CATG	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	366, 369, 385
FokI	GGATG	2 cut(s)	71, 223
Fsp4HI	GCNGC	3 cut(s)	366, 369, 385
FspBI	CTAG	3 cut(s)	183, 296, 516
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	3 cut(s)	366, 369, 385
HaeIII	GGCC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	266
Hpy188III	TCNNGA	2 cut(s)	101, 278
HpyAV	CCTTC	3 cut(s)	450, 454, 483
HpyCH4III	ACNGT	2 cut(s)	25, 543
HpyCH4V	TGCA	6 cut(s)	44, 95, 143, 289, 384, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 434, 481
HpyF3I	CTNAG	3 cut(s)	128, 333, 390
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	271, 301, 311
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	6 cut(s)	81, 86, 100, 228, 320, 480
Lsp1109I	GCAGC	2 cut(s)	380, 396
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	3 cut(s)	183, 296, 516
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	273, 303, 313
MboI	GATC	3 cut(s)	271, 301, 311
MboII	GAAGA	3 cut(s)	266, 434, 504
MfeI	CAATTG	1 cut(s)	246
MluCI	AATT	6 cut(s)	34, 73, 171, 246, 548, 559
MnlI	CCTC	6 cut(s)	97, 114, 131, 274, 334, 459
MseI	TTAA	3 cut(s)	201, 347, 471
MspCI	CTTAAG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	50, 434, 481
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	3 cut(s)	271, 301, 311
NheI	GCTAGC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	2 cut(s)	364, 485
NspI	RCATGY	1 cut(s)	289
PctI	GAATGC	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	367, 370, 386
PspN4I	GGNNCC	2 cut(s)	364, 485
PstI	CTGCAG	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	201, 347, 471
SatI	GCNGC	3 cut(s)	366, 369, 385
Sau3AI	GATC	3 cut(s)	271, 301, 311
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	2 cut(s)	93, 109
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	6 cut(s)	34, 73, 171, 246, 548, 559
SsiI	CCGC	2 cut(s)	366, 413
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	3 cut(s)	183, 296, 516
TaaI	ACNGT	2 cut(s)	25, 543
TaqI	TCGA	2 cut(s)	314, 526
TasI	AATT	6 cut(s)	34, 73, 171, 246, 548, 559
TauI	GCSGC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	201, 347, 471
Tru9I	TTAA	3 cut(s)	201, 347, 471
TscAI	CASTG	3 cut(s)	30, 97, 430
TseI	GCWGC	2 cut(s)	368, 384
TspRI	CASTG	3 cut(s)	30, 97, 430
Vha464I	CTTAAG	1 cut(s)	200
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	3 cut(s)	183, 296, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.