Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006996

Physical Location & Seq

Genomic Coordinates Reverse (-)

4785848 .. 4788930

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAGTGCTTCAAAGTTCATTAAATGTGTTACTGTTGGGGATGGAGCTGTAGGGAAGACCTGCATGCTAATTTGCTACACCAGCAACAAGTTTCCTACTGATTATATACCCACAGTGTTTGACAATTTTAGTGCAAATGTGGCTGTAGATGGAAATATTGTCAATTTGGGGCTGTGGGACACTGCAGGTCAGGAGGACTACAGCAGGTTGAGGCCACTAAGTTACAGAGGTGCAGATATATTTGTGTTGGCTTTCTCTCTAATTAGTAGAGCTAGCTATGAGAATGTTCTTAAGAAGTGGATGCCAGAACTTCGCCGATTTGCGCCTAATGTTCCAATTGTCCTTGTTGGGACAAAGCTTGATCTTCGTGAGGACATGCGCTATCTAGCTGATCATATGGGATCAAACATCATAACTTCTGCTCAGGTACTGATTTGTGTGTATTGGTTCATTTTCGTATTGTATTTTCATAAAAGCGTTACATTTATGTATAAGAAGCTCATTATGCTTAGTATACAGGGAGAGGAGTTGAGAAAGCAAATAGGAGCCGCAGCTTATATTGAATGCAGCTCTAAGACCCAACAGAATGTCAAAGCGGTGTTTGACACTGCCATCAAGGCTGTTCTTCAACCTCCAAGAAGGAAGGATATAGTTAAGCAGAAAAGGCACCGAAGGTCTGGTTGCTCATTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0019899 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

231

Amino Acids

26.19

Weight (kDa)

9.49

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 209	3.9e-47	Ras family
Roc	PF08477	8 - 121	7.7e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28950
fragaria_vesca	FvH4_1g05470
malus_domestica	MD02G1062800.v1.1 MD15G1190600.v1.1
prunus_persica	Prupe.7G226500_v2.0.a1
pyrus_communis	pycom02g04300 pycom15g17080
rosa_chinensis	RchiOBHm_Chr1g0336361 RchiOBHm_Chr2g0091151 RchiOBHm_Chr2g0104461 RchiOBHm_Chr2g0173521 RchiOBHm_Chr3g0493291
rosa_laevigata	RLG00000016186
rosa_multiflora	Rmu_sc0004311.1_g000035 Rmu_sc0031332.1_g000001 Rmu_ssc0000446.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150490
rosa_rugosa	Rorug02G0013800
rosa_samantha	Rh2AG059700 Rh2BG058400 Rh2CG060200 Rh2CG175500 Rh2DG059000 Rh3AG309100
rosa_wichuraiana	Rw2G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	68, 176, 195
AccB1I	GGYRCC	1 cut(s)	666
AccI	GTMKAC	1 cut(s)	514
AciI	CCGC	2 cut(s)	549, 596
AclWI	GGATC	1 cut(s)	409
AfaI	GTAC	1 cut(s)	429
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	12, 563, 629
AluBI	AGCT	8 cut(s)	47, 272, 276, 358, 389, 499, 554, 570
AluI	AGCT	8 cut(s)	47, 272, 276, 358, 389, 499, 554, 570
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	430
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	551, 567
AspLEI	GCGC	2 cut(s)	325, 381
AsuNHI	GCTAGC	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	563, 579
BccI	CCATC	3 cut(s)	35, 143, 620
BclI	TGATCA	1 cut(s)	391
BfaI	CTAG	2 cut(s)	273, 386
BfmI	CTRYAG	4 cut(s)	48, 144, 183, 199
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	3 cut(s)	68, 176, 195
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	3 cut(s)	549, 552, 568
BlsI	GCNGC	3 cut(s)	550, 553, 569
BmiI	GGNNCC	2 cut(s)	547, 668
BmsI	GCATC	1 cut(s)	291
BmtI	GCTAGC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	423
BseGI	GGATG	2 cut(s)	46, 306
BseMII	CTCAG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	563, 579
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	666
BslFI	GGGAC	2 cut(s)	191, 364
BsmFI	GGGAC	2 cut(s)	191, 364
BsmI	GAATGC	1 cut(s)	569
BsnI	GGCC	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	361, 391, 401
BspACI	CCGC	2 cut(s)	549, 596
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	547, 668
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	3 cut(s)	68, 176, 195
BspOI	GCTAGC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	666
BspTI	CTTAAG	1 cut(s)	290
BssMI	GATC	3 cut(s)	361, 391, 401
BssNAI	GTATAC	1 cut(s)	515
Bst1107I	GTATAC	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	34, 115
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	65, 274
BstDEI	CTNAG	4 cut(s)	218, 423, 509, 573
BstF5I	GGATG	2 cut(s)	46, 306
BstHHI	GCGC	2 cut(s)	325, 381
BstKTI	GATC	3 cut(s)	364, 394, 404
BstMBI	GATC	3 cut(s)	361, 391, 401
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 140, 505, 617, 664
BstNSI	RCATGY	2 cut(s)	67, 379
BstSFI	CTRYAG	4 cut(s)	48, 144, 183, 199
BstV1I	GCAGC	2 cut(s)	563, 579
BstV2I	GAAGAC	1 cut(s)	62
BstZ17I	GTATAC	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	46, 306
BtsI	GCAGTG	2 cut(s)	180, 606
BtsIMutI	CAGTG	3 cut(s)	120, 180, 606
BveI	ACCTGC	3 cut(s)	68, 176, 195
Cac8I	GCNNGC	2 cut(s)	65, 274
CaiI	CAGNNNCTG	1 cut(s)	430
CfoI	GCGC	2 cut(s)	325, 381
Csp6I	GTAC	1 cut(s)	428
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	2 cut(s)	64, 376
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	4 cut(s)	218, 423, 509, 573
DpnI	GATC	3 cut(s)	363, 393, 403
DpnII	GATC	3 cut(s)	361, 391, 401
FaeI	CATG	2 cut(s)	67, 379
FaqI	GGGAC	2 cut(s)	191, 364
FatI	CATG	2 cut(s)	63, 375
FauNDI	CATATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	514
Fnu4HI	GCNGC	3 cut(s)	549, 552, 568
FokI	GGATG	2 cut(s)	53, 313
Fsp4HI	GCNGC	3 cut(s)	549, 552, 568
FspBI	CTAG	2 cut(s)	273, 386
GlaI	GCGC	2 cut(s)	324, 380
GluI	GCNGC	3 cut(s)	549, 552, 568
HaeIII	GGCC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	325, 381
Hin1II	CATG	2 cut(s)	67, 379
Hin6I	GCGC	2 cut(s)	323, 379
HinP1I	GCGC	2 cut(s)	323, 379
HindIII	AAGCTT	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188III	TCNNGA	2 cut(s)	191, 368
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	3 cut(s)	633, 637, 666
HpyCH4III	ACNGT	2 cut(s)	34, 115
HpyCH4V	TGCA	5 cut(s)	63, 134, 185, 233, 567
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 140, 505, 617, 664
HpyF3I	CTNAG	4 cut(s)	218, 423, 509, 573
Hsp92II	CATG	2 cut(s)	67, 379
HspAI	GCGC	2 cut(s)	323, 379
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	361, 391, 401
LmnI	GCTCC	2 cut(s)	44, 545
LpnPI	CCDG	9 cut(s)	73, 94, 171, 176, 190, 318, 410, 503, 663
Lsp1109I	GCAGC	2 cut(s)	563, 579
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	273, 386
MaeIII	GTNAC	3 cut(s)	28, 221, 478
MalI	GATC	3 cut(s)	363, 393, 403
MboI	GATC	3 cut(s)	361, 391, 401
MboII	GAAGA	3 cut(s)	67, 356, 617
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	5 cut(s)	69, 124, 163, 261, 336
MnlI	CCTC	6 cut(s)	187, 204, 221, 364, 517, 642
MseI	TTAA	3 cut(s)	21, 291, 654
MspCI	CTTAAG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	569
MwoI	GCNNNNNNNGC	5 cut(s)	81, 140, 505, 617, 664
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	3 cut(s)	361, 391, 401
NheI	GCTAGC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	67, 379
NlaIV	GGNNCC	2 cut(s)	547, 668
NspI	RCATGY	2 cut(s)	67, 379
PaeI	GCATGC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	569
PkrI	GCNGC	3 cut(s)	550, 553, 569
PspN4I	GGNNCC	2 cut(s)	547, 668
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	430
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	21, 291, 654
SatI	GCNGC	3 cut(s)	549, 552, 568
Sau3AI	GATC	3 cut(s)	361, 391, 401
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	4 cut(s)	48, 144, 183, 199
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	5 cut(s)	69, 124, 163, 261, 336
SsiI	CCGC	2 cut(s)	549, 596
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	2 cut(s)	273, 386
TaaI	ACNGT	2 cut(s)	34, 115
TasI	AATT	5 cut(s)	69, 124, 163, 261, 336
TauI	GCSGC	1 cut(s)	551
Tru1I	TTAA	3 cut(s)	21, 291, 654
Tru9I	TTAA	3 cut(s)	21, 291, 654
TscAI	CASTG	3 cut(s)	120, 187, 613
TseI	GCWGC	2 cut(s)	551, 567
TspDTI	ATGAA	3 cut(s)	7, 439, 458
TspRI	CASTG	3 cut(s)	120, 187, 613
Vha464I	CTTAAG	1 cut(s)	290
XceI	RCATGY	2 cut(s)	67, 379
XmiI	GTMKAC	1 cut(s)	514
XspI	CTAG	2 cut(s)	273, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.