RchiOBHm_Chr2g0104461
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
15803772 .. 15805450
1679 bp
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UTR
Exon/CDS
Intron
PRQ47873

Sequence Viewer

Length: 603 bp
ATGAGTGCTTCAAAGTTCATTAAATGTGTTACTGTTGGGGATGGAGCTGTAGGGAAGACCTGCATGCTAATTTGCTACACCAGCAACAAGTTTCCTACTGATTATATACCCACAGTGTTTGACAATTTTAGTGCAAATGTGGCTGTGGATGGAAATATTGTCAATTTGGGGCTATGGGACACTGCAGGTCAGGAGGACTACAGCAGGTTGAGGCCACTAAGTTACAGAGGTGCAGATATATTTGTGTTGGCTTTCTCTCTAATTAGTAGAGCTAGCTATGAGAATGTTCTTAAGAAGTGGATGCCAGAACTTCGCCGATTTGCGCCTAATGTTCCAATTGTCCTTGTTGGGACAAAGCTTGATCTTCGTGAGGACATGCGCTATCTAGCTGATCATATGGGATCGAACATCATAACTTCTGCTCAGGGAGAGGAGTTAAGAAAGCAAATAGGAGCCGCAGCTTATATTGAATGCAGCTCTAAGACCCAACAGAATGTCAAAGCGGTGTTTGACACTGCCATCAAGGCTGTTCTTCAACCTCCAAGAAGGAAGGATATAGTTAAGCAGAAAAGGCACCGAAGGTCTGGTTGCTCATTTGTGTAA

Protein Analysis

200

Amino Acids

22.33

Weight (kDa)

9.42

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 9.2e-51 Ras family
Roc PF08477 8 - 121 5.2e-23 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 68, 176, 195
AccB1I GGYRCC 1 cut(s) 573
AciI CCGC 2 cut(s) 456, 503
AclWI GGATC 1 cut(s) 409
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 12, 470, 536
AluBI AGCT 7 cut(s) 47, 272, 276, 358, 389, 461, 477
AluI AGCT 7 cut(s) 47, 272, 276, 358, 389, 461, 477
AlwI GGATC 1 cut(s) 409
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 458, 474
AspLEI GCGC 2 cut(s) 325, 381
AsuNHI GCTAGC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 470, 486
BccI CCATC 3 cut(s) 35, 143, 527
BclI TGATCA 1 cut(s) 391
BfaI CTAG 2 cut(s) 273, 386
BfmI CTRYAG 3 cut(s) 48, 183, 199
BfrI CTTAAG 1 cut(s) 290
BfuAI ACCTGC 3 cut(s) 68, 176, 195
BglI GCCNNNNNGGC 1 cut(s) 524
BisI GCNGC 3 cut(s) 456, 459, 475
BlsI GCNGC 3 cut(s) 457, 460, 476
BmiI GGNNCC 2 cut(s) 454, 575
BmsI GCATC 1 cut(s) 291
BmtI GCTAGC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 423
BseGI GGATG 3 cut(s) 46, 154, 306
BseMII CTCAG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 2 cut(s) 470, 486
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 573
BslFI GGGAC 2 cut(s) 191, 364
BsmFI GGGAC 2 cut(s) 191, 364
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 3 cut(s) 361, 391, 401
BspACI CCGC 2 cut(s) 456, 503
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 454, 575
BspMAI CTGCAG 1 cut(s) 187
BspMI ACCTGC 3 cut(s) 68, 176, 195
BspOI GCTAGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 573
BspTI CTTAAG 1 cut(s) 290
BssMI GATC 3 cut(s) 361, 391, 401
Bst4CI ACNGT 2 cut(s) 34, 115
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 65, 274
BstDEI CTNAG 3 cut(s) 218, 423, 480
BstF5I GGATG 3 cut(s) 46, 154, 306
BstHHI GCGC 2 cut(s) 325, 381
BstKTI GATC 3 cut(s) 364, 394, 404
BstMBI GATC 3 cut(s) 361, 391, 401
BstMWI GCNNNNNNNGC 4 cut(s) 81, 140, 524, 571
BstNSI RCATGY 2 cut(s) 67, 379
BstSFI CTRYAG 3 cut(s) 48, 183, 199
BstV1I GCAGC 2 cut(s) 470, 486
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 3 cut(s) 46, 154, 306
BtsI GCAGTG 2 cut(s) 180, 513
BtsIMutI CAGTG 3 cut(s) 120, 180, 513
BveI ACCTGC 3 cut(s) 68, 176, 195
Cac8I GCNNGC 2 cut(s) 65, 274
CfoI GCGC 2 cut(s) 325, 381
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 2 cut(s) 64, 376
DdeI CTNAG 3 cut(s) 218, 423, 480
DpnI GATC 3 cut(s) 363, 393, 403
DpnII GATC 3 cut(s) 361, 391, 401
FaeI CATG 2 cut(s) 67, 379
FaqI GGGAC 2 cut(s) 191, 364
FatI CATG 2 cut(s) 63, 375
FauNDI CATATG 1 cut(s) 396
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 3 cut(s) 456, 459, 475
FokI GGATG 3 cut(s) 53, 161, 313
Fsp4HI GCNGC 3 cut(s) 456, 459, 475
FspBI CTAG 2 cut(s) 273, 386
GlaI GCGC 2 cut(s) 324, 380
GluI GCNGC 3 cut(s) 456, 459, 475
HaeIII GGCC 1 cut(s) 214
HhaI GCGC 2 cut(s) 325, 381
Hin1II CATG 2 cut(s) 67, 379
Hin6I GCGC 2 cut(s) 323, 379
HinP1I GCGC 2 cut(s) 323, 379
HindIII AAGCTT 1 cut(s) 356
Hpy188III TCNNGA 2 cut(s) 191, 368
HpyAV CCTTC 3 cut(s) 540, 544, 573
HpyCH4III ACNGT 2 cut(s) 34, 115
HpyCH4V TGCA 5 cut(s) 63, 134, 185, 233, 474
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 140, 524, 571
HpyF3I CTNAG 3 cut(s) 218, 423, 480
Hsp92II CATG 2 cut(s) 67, 379
HspAI GCGC 2 cut(s) 323, 379
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 3 cut(s) 361, 391, 401
LmnI GCTCC 2 cut(s) 44, 452
LpnPI CCDG 8 cut(s) 73, 94, 171, 176, 190, 318, 410, 570
Lsp1109I GCAGC 2 cut(s) 470, 486
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 273, 386
MaeIII GTNAC 2 cut(s) 28, 221
MalI GATC 3 cut(s) 363, 393, 403
MboI GATC 3 cut(s) 361, 391, 401
MboII GAAGA 3 cut(s) 67, 356, 524
MfeI CAATTG 1 cut(s) 336
MluCI AATT 5 cut(s) 69, 124, 163, 261, 336
MnlI CCTC 6 cut(s) 187, 204, 221, 364, 424, 549
MseI TTAA 4 cut(s) 21, 291, 437, 561
MspCI CTTAAG 1 cut(s) 290
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 476
MwoI GCNNNNNNNGC 4 cut(s) 81, 140, 524, 571
NdeI CATATG 1 cut(s) 396
NdeII GATC 3 cut(s) 361, 391, 401
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 2 cut(s) 67, 379
NlaIV GGNNCC 2 cut(s) 454, 575
NspI RCATGY 2 cut(s) 67, 379
PaeI GCATGC 1 cut(s) 67
PctI GAATGC 1 cut(s) 476
PkrI GCNGC 3 cut(s) 457, 460, 476
PspN4I GGNNCC 2 cut(s) 454, 575
PstI CTGCAG 1 cut(s) 187
SaqAI TTAA 4 cut(s) 21, 291, 437, 561
SatI GCNGC 3 cut(s) 456, 459, 475
Sau3AI GATC 3 cut(s) 361, 391, 401
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 3 cut(s) 48, 183, 199
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 67
Sse9I AATT 5 cut(s) 69, 124, 163, 261, 336
SsiI CCGC 2 cut(s) 456, 503
SspI AATATT 1 cut(s) 157
SspMI CTAG 2 cut(s) 273, 386
TaaI ACNGT 2 cut(s) 34, 115
TaqI TCGA 1 cut(s) 404
TasI AATT 5 cut(s) 69, 124, 163, 261, 336
TauI GCSGC 1 cut(s) 458
Tru1I TTAA 4 cut(s) 21, 291, 437, 561
Tru9I TTAA 4 cut(s) 21, 291, 437, 561
TscAI CASTG 3 cut(s) 120, 187, 520
TseI GCWGC 2 cut(s) 458, 474
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 3 cut(s) 120, 187, 520
Vha464I CTTAAG 1 cut(s) 290
XceI RCATGY 2 cut(s) 67, 379
XspI CTAG 2 cut(s) 273, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.