Rorug02G0013800
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
1170810 .. 1174748
3939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0013800.1

Sequence Viewer

Length: 1050 bp
ATGCTAAGCTCATTAGTACACGCGCCACCACTCGCTTTTCTCTCCGCCTCGCTTCCCCGCCTTTTCTCCACGCACAACGCCACGCGCGCCGCCATGGCCGCCGCCACCTCAGCTCGAATCGTAGTCGTCGGCGACGTCCATGATCAGTGGAATCTAGAAGACGACACGAAAGCTCTTCGATTTCTGCAGCCGGATTTGGTTCTTTTTACAGGTGATTTTGGTGAAGAGAACATTGAACTTGTTCGCAGCGTTGCAAATCTTGAATTTGCTAAAGCAGTTATTTTGGGAAACCATGATGCCTGGCATACAAAAAAGTTTTCAGGGAAGACAAAAGACGGCGTTCAACTTCAGCTAGACTGTCTAGGCGAGGAGCATGTAGCTTATAGATGTTTGGACTTTGCTACGGTAAAACTGAGCATTGTTGGTGGACGACCTTTTTCTAGTGGGGGAAACCAGTTATTTCGATTAAAGCTTCTGTCTGCAAGGTATGGAGTCCAAGACATGGATGGAAGTGCTAAGAGAATCTGCAAAGCAGCTTTGGGTGCTCCAGAGGACCATATGGTCATTATTCTTGCACACAATGGACCCACAGGTCTTGGTTCTAACTTGGATGACATATGTGGAAAAGACTGGGACTTTGGAGGTGGAGATCATGGTGATGCAGATCTAGCACAAGCCCTGTCCCTCCTAAAAGAGTCCGGCAAAACCTGTGTTCCATTGGTAGTGTTTGGTCACATGCATAAACAGCTAGCAGGTGGAAATGGTCTTCGGAAAATGATCGTGGTTGGAGCTGACAATACTATATACCTGAATGCGGCCATTGTTCCTAGAGTCAAGAGACTAAATGATGAACAAGGAACTAGCAATAAAAGCTTCGTGAATAATGAACCCAGTCTTTCAACGCCGGAGTCCTGTGGCACCATTCGAGCCTTCACTTTAGTGGAGATTTTGGACGGAGGAGTAGATAAGATTGTTGAAACTTGGGTTTCTGTTGTGGGTGATAGGACCAAATTGGAAGAGGAGCACATATTATTCAGAAGTGGCAGTTAG

Protein Analysis

349

Amino Acids

37.61

Weight (kDa)

5.94

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 39 - 248 1.8e-13 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 743
AasI GACNNNNNNGTC 2 cut(s) 560, 591
AatII GACGTC 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 917
AccB7I CCANNNNNTGG 1 cut(s) 502
AccII CGCG 3 cut(s) 23, 85, 87
AciI CCGC 6 cut(s) 45, 58, 90, 99, 102, 815
AcoI YGGCCR 2 cut(s) 96, 816
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 502, 814
AgsI TTSAA 5 cut(s) 236, 263, 344, 900, 977
AjnI CCWGG 1 cut(s) 299
AleI CACNNNNGTG 1 cut(s) 938
Alw21I GWGCWC 2 cut(s) 547, 1026
Alw26I GTCTC 1 cut(s) 832
AoxI GGCC 2 cut(s) 96, 816
ApeKI GCWGC 3 cut(s) 187, 246, 533
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 3 cut(s) 25, 87, 89
AspS9I GGNCC 3 cut(s) 553, 584, 1005
AsuHPI GGTGA 4 cut(s) 224, 233, 668, 1010
AsuNHI GCTAGC 1 cut(s) 748
AvaII GGWCC 3 cut(s) 553, 584, 1005
BanI GGYRCC 1 cut(s) 917
BbsI GAAGAC 3 cut(s) 165, 332, 758
Bbv12I GWGCWC 2 cut(s) 547, 1026
BbvCI CCTCAGC 1 cut(s) 109
BbvI GCAGC 3 cut(s) 199, 258, 545
BccI CCATC 1 cut(s) 500
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 301
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 832
BfaI CTAG 8 cut(s) 155, 353, 362, 441, 668, 749, 828, 861
BfmI CTRYAG 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 743
BglI GCCNNNNNGGC 1 cut(s) 95
BglII AGATCT 1 cut(s) 664
BisI GCNGC 7 cut(s) 90, 99, 102, 188, 247, 534, 816
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 7 cut(s) 91, 100, 103, 189, 248, 535, 817
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 3 cut(s) 553, 584, 1005
BmgT120I GGNCC 3 cut(s) 553, 584, 1005
BmiI GGNNCC 2 cut(s) 586, 919
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 2 cut(s) 640, 885
BmsI GCATC 2 cut(s) 286, 649
BmtI GCTAGC 1 cut(s) 752
BmuI ACTGGG 2 cut(s) 640, 885
BpiI GAAGAC 3 cut(s) 165, 332, 758
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 109
Bpu1102I GCTNAGC 1 cut(s) 5
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 814
Bse1I ACTGG 3 cut(s) 454, 635, 891
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 511, 616
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 502, 814
BseMII CTCAG 2 cut(s) 123, 404
BseNI ACTGG 3 cut(s) 454, 635, 891
BsePI GCGCGC 1 cut(s) 85
BseRI GAGGAG 3 cut(s) 383, 972, 1034
BseXI GCAGC 3 cut(s) 199, 258, 545
Bsh1236I CGCG 3 cut(s) 23, 85, 87
BshFI GGCC 2 cut(s) 98, 818
BshNI GGYRCC 1 cut(s) 917
BsiHKAI GWGCWC 2 cut(s) 547, 1026
BsiSI CCGG 3 cut(s) 191, 699, 905
BslFI GGGAC 2 cut(s) 647, 667
BslI CCNNNNNNNGG 2 cut(s) 502, 814
BsmAI GTCTC 1 cut(s) 832
BsmFI GGGAC 2 cut(s) 647, 667
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 2 cut(s) 98, 818
Bsp1286I GDGCHC 2 cut(s) 547, 1026
Bsp143I GATC 4 cut(s) 142, 649, 664, 777
Bsp1720I GCTNAGC 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 6 cut(s) 45, 58, 90, 99, 102, 815
BspANI GGCC 2 cut(s) 98, 818
BspCNI CTCAG 2 cut(s) 122, 405
BspFNI CGCG 3 cut(s) 23, 85, 87
BspLI GGNNCC 2 cut(s) 586, 919
BspMAI CTGCAG 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 743
BspOI GCTAGC 1 cut(s) 752
BspQI GCTCTTC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 917
BsrI ACTGG 3 cut(s) 454, 635, 891
BssECI CCNNGG 1 cut(s) 93
BssHII GCGCGC 1 cut(s) 85
BssMI GATC 4 cut(s) 142, 649, 664, 777
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 359, 406
Bst6I CTCTTC 3 cut(s) 180, 219, 1011
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 87, 750
BstDEI CTNAG 4 cut(s) 5, 109, 413, 516
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 511, 616
BstFNI CGCG 3 cut(s) 23, 85, 87
BstHHI GCGC 3 cut(s) 25, 87, 89
BstKTI GATC 4 cut(s) 145, 652, 667, 780
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 4 cut(s) 142, 649, 664, 777
BstMWI GCNNNNNNNGC 8 cut(s) 86, 95, 98, 110, 542, 668, 745, 870
BstNI CCWGG 1 cut(s) 301
BstNSI RCATGY 2 cut(s) 377, 739
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 3 cut(s) 23, 85, 87
BstV1I GCAGC 3 cut(s) 199, 258, 545
BstV2I GAAGAC 3 cut(s) 165, 332, 758
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 2 cut(s) 98, 818
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 511, 616
BtsIMutI CAGTG 1 cut(s) 152
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 2 cut(s) 87, 750
CfoI GCGC 3 cut(s) 25, 87, 89
Cfr13I GGNCC 3 cut(s) 553, 584, 1005
Csp6I GTAC 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 7 cut(s) 94, 140, 293, 374, 502, 653, 736
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 4 cut(s) 5, 109, 413, 516
DpnI GATC 4 cut(s) 144, 651, 666, 779
DpnII GATC 4 cut(s) 142, 649, 664, 777
DrdI GACNNNNNNGTC 2 cut(s) 560, 591
DseDI GACNNNNNNGTC 2 cut(s) 560, 591
EaeI YGGCCR 2 cut(s) 96, 816
Eam1104I CTCTTC 3 cut(s) 180, 219, 1011
EarI CTCTTC 3 cut(s) 180, 219, 1011
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 3 cut(s) 553, 584, 1005
Eco57I CTGAAG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 7 cut(s) 97, 143, 296, 377, 505, 656, 739
FaqI GGGAC 2 cut(s) 647, 667
FatI CATG 7 cut(s) 93, 139, 292, 373, 501, 652, 735
FauI CCCGC 1 cut(s) 65
FauNDI CATATG 2 cut(s) 558, 617
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 7 cut(s) 90, 99, 102, 188, 247, 534, 816
FokI GGATG 2 cut(s) 518, 623
Fsp4HI GCNGC 7 cut(s) 90, 99, 102, 188, 247, 534, 816
FspBI CTAG 8 cut(s) 155, 353, 362, 441, 668, 749, 828, 861
GlaI GCGC 3 cut(s) 24, 86, 88
GluI GCNGC 7 cut(s) 90, 99, 102, 188, 247, 534, 816
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 2 cut(s) 98, 818
HapII CCGG 3 cut(s) 191, 699, 905
HhaI GCGC 3 cut(s) 25, 87, 89
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 7 cut(s) 97, 143, 296, 377, 505, 656, 739
Hin6I GCGC 3 cut(s) 23, 85, 87
HinP1I GCGC 3 cut(s) 23, 85, 87
HindIII AAGCTT 2 cut(s) 470, 871
HinfI GANTC 7 cut(s) 117, 151, 492, 522, 695, 831, 908
HpaII CCGG 3 cut(s) 191, 699, 905
HphI GGTGA 4 cut(s) 224, 233, 668, 1010
Hpy166II GTNNAC 2 cut(s) 19, 428
Hpy188I TCNGA 2 cut(s) 771, 1037
Hpy188III TCNNGA 5 cut(s) 155, 260, 548, 835, 877
Hpy8I GTNNAC 2 cut(s) 19, 428
Hpy99I CGWCG 2 cut(s) 131, 137
HpyAV CCTTC 1 cut(s) 940
HpyCH4III ACNGT 2 cut(s) 359, 406
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 7 cut(s) 187, 254, 482, 528, 575, 662, 739
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 95, 98, 110, 542, 668, 745, 870
HpyF3I CTNAG 4 cut(s) 5, 109, 413, 516
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 7 cut(s) 97, 143, 296, 377, 505, 656, 739
HspAI GCGC 3 cut(s) 23, 85, 87
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 4 cut(s) 142, 649, 664, 777
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 4 cut(s) 370, 550, 788, 1021
Lsp1109I GCAGC 3 cut(s) 199, 258, 545
LweI GCATC 2 cut(s) 286, 649
MaeI CTAG 8 cut(s) 155, 353, 362, 441, 668, 749, 828, 861
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 731
MalI GATC 4 cut(s) 144, 651, 666, 779
MboI GATC 4 cut(s) 142, 649, 664, 777
MboII GAAGA 6 cut(s) 167, 170, 236, 337, 758, 1028
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 2 cut(s) 547, 1026
MluCI AATT 2 cut(s) 263, 1010
MlyI GAGTC 4 cut(s) 501, 704, 840, 917
MmeI TCCRAC 1 cut(s) 766
MnlI CCTC 8 cut(s) 58, 118, 361, 544, 635, 695, 950, 1012
Mph1103I ATGCAT 1 cut(s) 741
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 2 cut(s) 657, 938
MspI CCGG 3 cut(s) 191, 699, 905
MspR9I CCNGG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 1 cut(s) 301
MvnI CGCG 3 cut(s) 23, 85, 87
MwoI GCNNNNNNNGC 8 cut(s) 86, 95, 98, 110, 542, 668, 745, 870
NcoI CCATGG 1 cut(s) 93
NdeI CATATG 2 cut(s) 558, 617
NdeII GATC 4 cut(s) 142, 649, 664, 777
NheI GCTAGC 1 cut(s) 748
NlaIII CATG 7 cut(s) 97, 143, 296, 377, 505, 656, 739
NlaIV GGNNCC 2 cut(s) 586, 919
NmuCI GTSAC 1 cut(s) 731
NsiI ATGCAT 1 cut(s) 741
NspI RCATGY 2 cut(s) 377, 739
OliI CACNNNNGTG 1 cut(s) 938
PaqCI CACCTGC 1 cut(s) 743
PauI GCGCGC 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 117, 151, 522
PflMI CCANNNNNTGG 1 cut(s) 502
PkrI GCNGC 7 cut(s) 91, 100, 103, 189, 248, 535, 817
PleI GAGTC 4 cut(s) 500, 703, 839, 916
PpsI GAGTC 4 cut(s) 500, 703, 839, 916
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 586, 919
PspPI GGNCC 3 cut(s) 553, 584, 1005
PstI CTGCAG 1 cut(s) 189
PsuI RGATCY 1 cut(s) 664
PteI GCGCGC 1 cut(s) 85
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 2 cut(s) 657, 938
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 7 cut(s) 90, 99, 102, 188, 247, 534, 816
Sau3AI GATC 4 cut(s) 142, 649, 664, 777
Sau96I GGNCC 3 cut(s) 553, 584, 1005
SchI GAGTC 4 cut(s) 501, 704, 840, 917
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 2 cut(s) 547, 1026
SfaNI GCATC 2 cut(s) 286, 649
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 3 cut(s) 553, 584, 1005
SmiMI CAYNNNNRTG 2 cut(s) 657, 938
Sse9I AATT 2 cut(s) 263, 1010
SsiI CCGC 6 cut(s) 45, 58, 90, 99, 102, 815
SspMI CTAG 8 cut(s) 155, 353, 362, 441, 668, 749, 828, 861
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 359, 406
TaiI ACGT 1 cut(s) 138
TaqI TCGA 4 cut(s) 115, 178, 463, 925
TasI AATT 2 cut(s) 263, 1010
TatI WGTACW 1 cut(s) 16
TauI GCSGC 4 cut(s) 92, 101, 104, 818
TfiI GAWTC 3 cut(s) 117, 151, 522
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 3 cut(s) 187, 246, 533
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 2 cut(s) 864, 900
TspGWI ACGGA 1 cut(s) 969
TspRI CASTG 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 3 cut(s) 553, 584, 1005
XapI RAATTY 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 154
XceI RCATGY 2 cut(s) 377, 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 8 cut(s) 155, 353, 362, 441, 668, 749, 828, 861
ZraI GACGTC 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.