Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006996

Physical Location & Seq

Genomic Coordinates Forward (+)

2830472 .. 2832575

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04300.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGTGTTTCTAAGTTCATTAAATGTGTCACTGTTGGTGATGGAGCTGTTGGGAAGACCTGTATGCTCATTTGTTACACCAGCAACAAGTTTCCCACTGATTATGTACCAACAGTTTTTGACAATTTTAGTGCAAATGTTGCTGTTGATGGGAACATAGTGAACCTGGGGCTATGGGACACTGCAGGCCAGGAGGATTATAGCAGGTTGAGACCACTGAGTTATAGAGGTGCAGACATATTTGTGTTAGCTTTCTCCTTAATTAGTAGGGCAAGCTATGAGAACGTTCTTAAGAAGTGGATGCCGGAACTTCGTAGGTTTGCTCCCAATGTTCCGATTGTTCTTGTTGGGACAAAGCTAGATATTCGTGAGGACATGGGGTACCTAGCTGATCATATGGATCGATCATCCAACATCATAACTTCTGCTCAGGGAGAGGAGCTGAGAAAGCAAGTAGGTGCTGCAGCTTATATCGAGTGCAGCTCGAAAACTCAGCAGAATGTCAAAGCTGTTTTCGATACTGCCATTAAGGTTGTTCGTCAACCTCCGAGAAGGAAGGATATGGCTCAGAAGAAAAGGCGCCGGAGATCTGCTTGCTCAATTGCGAGCATTGTGTGTGGAGGCTGTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0019899 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

212

Amino Acids

23.37

Weight (kDa)

9.28

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28950
fragaria_vesca	FvH4_1g05470
malus_domestica	MD02G1062800.v1.1 MD15G1190600.v1.1
prunus_persica	Prupe.7G226500_v2.0.a1
pyrus_communis	pycom02g04300 pycom15g17080
rosa_chinensis	RchiOBHm_Chr1g0336361 RchiOBHm_Chr2g0091151 RchiOBHm_Chr2g0104461 RchiOBHm_Chr2g0173521 RchiOBHm_Chr3g0493291
rosa_laevigata	RLG00000016186
rosa_multiflora	Rmu_sc0004311.1_g000035 Rmu_sc0031332.1_g000001 Rmu_ssc0000446.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150490
rosa_rugosa	Rorug02G0013800
rosa_samantha	Rh2AG059700 Rh2BG058400 Rh2CG060200 Rh2CG175500 Rh2DG059000 Rh3AG309100
rosa_wichuraiana	Rw2G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	195
Acc65I	GGTACC	1 cut(s)	381
AccB1I	GGYRCC	2 cut(s)	381, 579
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	580
AfaI	GTAC	2 cut(s)	108, 383
AflII	CTTAAG	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	165, 189
AluBI	AGCT	9 cut(s)	47, 251, 276, 358, 389, 442, 467, 483, 509
AluI	AGCT	9 cut(s)	47, 251, 276, 358, 389, 442, 467, 483, 509
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	3 cut(s)	461, 464, 480
Asp718I	GGTACC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	582
AsuHPI	GGTGA	1 cut(s)	50
BanI	GGYRCC	2 cut(s)	381, 579
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	448, 476, 492
BccI	CCATC	2 cut(s)	35, 143
BciT130I	CCWGG	2 cut(s)	167, 191
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	2 cut(s)	359, 386
BfmI	CTRYAG	2 cut(s)	183, 462
BfoI	RGCGCY	1 cut(s)	583
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	3 cut(s)	462, 465, 481
BlsI	GCNGC	3 cut(s)	463, 466, 482
Bme1390I	CCNGG	2 cut(s)	167, 191
BmiI	GGNNCC	2 cut(s)	383, 581
BmrFI	CCNGG	2 cut(s)	167, 191
BmsI	GCATC	2 cut(s)	291, 619
BpiI	GAAGAC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
Bpu10I	CCTNAGC	1 cut(s)	429
Bsa29I	ATCGAT	1 cut(s)	403
BsaHI	GRCGYC	1 cut(s)	580
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	167, 191
BseCI	ATCGAT	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	306, 407
BseMII	CTCAG	5 cut(s)	209, 434, 443, 506, 581
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	3 cut(s)	448, 476, 492
BsgI	GTGCAG	2 cut(s)	252, 499
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	2 cut(s)	381, 579
BshVI	ATCGAT	1 cut(s)	403
BsiSI	CCGG	2 cut(s)	305, 583
BslFI	GGGAC	2 cut(s)	191, 364
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	2 cut(s)	191, 364
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	391, 400, 404, 587
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	5 cut(s)	210, 435, 442, 505, 580
BspDI	ATCGAT	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	383, 581
BspMAI	CTGCAG	2 cut(s)	187, 466
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	2 cut(s)	381, 579
BspTI	CTTAAG	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	4 cut(s)	391, 400, 404, 587
BssNI	GRCGYC	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	167, 191
Bst4CI	ACNGT	2 cut(s)	34, 115
BstACI	GRCGYC	1 cut(s)	580
BstAFI	CTTAAG	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	4 cut(s)	187, 274, 595, 607
BstDEI	CTNAG	7 cut(s)	12, 218, 429, 443, 492, 567, 633
BstF5I	GGATG	2 cut(s)	306, 407
BstH2I	RGCGCY	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	4 cut(s)	394, 403, 407, 590
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	4 cut(s)	391, 400, 404, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 448
BstNI	CCWGG	2 cut(s)	167, 191
BstSCI	CCNGG	2 cut(s)	165, 189
BstSFI	CTRYAG	2 cut(s)	183, 462
BstV1I	GCAGC	3 cut(s)	448, 476, 492
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	306, 407
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	4 cut(s)	30, 96, 180, 215
BveI	ACCTGC	1 cut(s)	195
Cac8I	GCNNGC	4 cut(s)	187, 274, 595, 607
CfoI	GCGC	1 cut(s)	582
ClaI	ATCGAT	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	107, 382
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	2 cut(s)	107, 382
DdeI	CTNAG	7 cut(s)	12, 218, 429, 443, 492, 567, 633
DinI	GGCGCC	1 cut(s)	581
DpnI	GATC	4 cut(s)	393, 402, 406, 589
DpnII	GATC	4 cut(s)	391, 400, 404, 587
Eco31I	GGTCTC	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	165, 189
EgeI	GGCGCC	1 cut(s)	581
EheI	GGCGCC	1 cut(s)	581
FaeI	CATG	1 cut(s)	379
FaqI	GGGAC	2 cut(s)	191, 364
FatI	CATG	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	462, 465, 481
FokI	GGATG	2 cut(s)	313, 394
Fsp4HI	GCNGC	3 cut(s)	462, 465, 481
FspBI	CTAG	2 cut(s)	359, 386
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	3 cut(s)	462, 465, 481
HaeII	RGCGCY	1 cut(s)	583
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	305, 583
HhaI	GCGC	1 cut(s)	582
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HpaII	CCGG	2 cut(s)	305, 583
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	163, 542
Hpy188I	TCNGA	3 cut(s)	336, 549, 570
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	2 cut(s)	163, 542
HpyAV	CCTTC	2 cut(s)	546, 550
HpyCH4III	ACNGT	2 cut(s)	34, 115
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	5 cut(s)	134, 185, 233, 464, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 448
HpyF3I	CTNAG	7 cut(s)	12, 218, 429, 443, 492, 567, 633
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	580
KasI	GGCGCC	1 cut(s)	579
KpnI	GGTACC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	391, 400, 404, 587
LmnI	GCTCC	3 cut(s)	44, 328, 439
Lsp1109I	GCAGC	3 cut(s)	448, 476, 492
LweI	GCATC	2 cut(s)	291, 619
MaeI	CTAG	2 cut(s)	359, 386
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	28, 74
MalI	GATC	4 cut(s)	393, 402, 406, 589
MboI	GATC	4 cut(s)	391, 400, 404, 587
MboII	GAAGA	2 cut(s)	67, 583
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	1 cut(s)	587
MluCI	AATT	3 cut(s)	124, 261, 600
Mly113I	GGCGCC	1 cut(s)	580
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	6 cut(s)	187, 221, 364, 430, 555, 614
MseI	TTAA	4 cut(s)	21, 260, 291, 528
MslI	CAYNNNNRTG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	2 cut(s)	305, 583
MspR9I	CCNGG	2 cut(s)	167, 191
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	2 cut(s)	167, 191
MwoI	GCNNNNNNNGC	2 cut(s)	140, 448
NarI	GGCGCC	1 cut(s)	580
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	4 cut(s)	391, 400, 404, 587
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	383, 581
NmuCI	GTSAC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	463, 466, 482
PluTI	GGCGCC	1 cut(s)	583
Psp1406I	AACGTT	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	165, 189
PspGI	CCWGG	2 cut(s)	165, 189
PspN4I	GGNNCC	2 cut(s)	383, 581
PstI	CTGCAG	2 cut(s)	187, 466
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	2 cut(s)	108, 383
RsaNI	GTAC	2 cut(s)	107, 382
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	4 cut(s)	21, 260, 291, 528
SatI	GCNGC	3 cut(s)	462, 465, 481
Sau3AI	GATC	4 cut(s)	391, 400, 404, 587
ScrFI	CCNGG	2 cut(s)	167, 191
SfaNI	GCATC	2 cut(s)	291, 619
SfcI	CTRYAG	2 cut(s)	183, 462
SfoI	GGCGCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	124, 261, 600
SspDI	GGCGCC	1 cut(s)	579
SspMI	CTAG	2 cut(s)	359, 386
StyD4I	CCNGG	2 cut(s)	165, 189
TaaI	ACNGT	2 cut(s)	34, 115
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	4 cut(s)	403, 474, 485, 516
TasI	AATT	3 cut(s)	124, 261, 600
Tru1I	TTAA	4 cut(s)	21, 260, 291, 528
Tru9I	TTAA	4 cut(s)	21, 260, 291, 528
TscAI	CASTG	4 cut(s)	37, 103, 187, 222
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	461, 464, 480
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	4 cut(s)	37, 103, 187, 222
Vha464I	CTTAAG	1 cut(s)	290
XspI	CTAG	2 cut(s)	359, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.