AT4G29030

glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14307195 .. 14308022
828 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29030.1

Sequence Viewer

Length: 348 bp
ATGGCGAAGTGGTTTTTCACTATCTTCTTGGTTTTTGCCCTAGCCTCAGCTTTAGCTTGTGGCGCAAGAAACGTCCCAGTAGGCCTCTCTGACCAAAAGAACTACCTCGGATATGGTGGCGGATATTCCGGCGTTGGAGACAATGGTTTACCCTTTGGTGGCGTCGGTGGAGGTGTGTCTGGTCCCGGAGGTAATCTTGGTTATGGGGGATTTGGTGGTGCTGGTGGCGGCTTAGGCGGTGGTTTGGGCGGTGGAGCAGGCAGTGGATTAGGCGGTGGCTTAGGTGGTGGAAGTGGAATTGGTGCCGGAACCAGTGGAGGAAGTACCGGAGGAGTTCATTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

10.3

Weight (kDa)

7.91

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29030
fragaria_vesca FvH4_2g19680
malus_domestica MD05G1181500.v1.1
prunus_persica Prupe.8G208000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0285411
rosa_laevigata RLG00000012643
rosa_roxburghii Rroxscaffold_7G00183230
rosa_rugosa Rorug06G0174300
rosa_samantha Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana Rw6G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AciI CCGC 5 cut(s) 120, 228, 237, 249, 273
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 158
AluBI AGCT 2 cut(s) 50, 56
AluI AGCT 2 cut(s) 50, 56
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 182
BanI GGYRCC 1 cut(s) 302
BbvCI CCTCAGC 1 cut(s) 46
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 3 cut(s) 184, 304, 310
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 71
Bpu10I CCTNAGC 3 cut(s) 46, 232, 280
BpuMI CCSGG 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 77, 312
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 77, 312
BseRI GAGGAG 1 cut(s) 345
BshFI GGCC 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 4 cut(s) 129, 186, 306, 327
BslFI GGGAC 2 cut(s) 59, 168
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 59, 168
BsnI GGCC 1 cut(s) 84
BspACI CCGC 5 cut(s) 120, 228, 237, 249, 273
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 59
BspLI GGNNCC 3 cut(s) 184, 304, 310
BspT107I GGYRCC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 77, 312
BssECI CCNNGG 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 3 cut(s) 46, 232, 280
BstHHI GCGC 1 cut(s) 65
BstMAI GTCTC 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 62, 234
BstSCI CCNGG 1 cut(s) 184
BsuRI GGCC 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 268, 319
Cac8I GCNNGC 1 cut(s) 259
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 182
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 324
CviJI RGCY 6 cut(s) 44, 50, 56, 84, 231, 279
CviKI_1 RGCY 6 cut(s) 44, 50, 56, 84, 231, 279
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 46, 232, 280
EciI GGCGGA 1 cut(s) 135
Eco147I AGGCCT 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 182
FaiI YATR 2 cut(s) 114, 204
FaqI GGGAC 2 cut(s) 59, 168
Fnu4HI GCNGC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 229
HaeIII GGCC 1 cut(s) 84
HapII CCGG 4 cut(s) 129, 186, 306, 327
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 162
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HpaII CCGG 4 cut(s) 129, 186, 306, 327
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 91, 110
Hpy8I GTNNAC 1 cut(s) 149
Hpy99I CGWCG 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 234
HpyF3I CTNAG 3 cut(s) 46, 232, 280
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 162
HspAI GCGC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 9 cut(s) 90, 142, 165, 199, 207, 243, 319, 325, 340
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 72
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 7 cut(s) 55, 95, 116, 164, 182, 311, 323
MspI CCGG 4 cut(s) 129, 186, 306, 327
MspR9I CCNGG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 62, 234
NciI CCSGG 1 cut(s) 186
NlaIV GGNNCC 3 cut(s) 184, 304, 310
PceI AGGCCT 1 cut(s) 84
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 1 cut(s) 230
PspN4I GGNNCC 3 cut(s) 184, 304, 310
PspPI GGNCC 1 cut(s) 182
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SatI GCNGC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 186
SetI ASST 7 cut(s) 52, 58, 75, 108, 175, 193, 286
SinI GGWCC 1 cut(s) 182
Sse9I AATT 1 cut(s) 297
SseBI AGGCCT 1 cut(s) 84
SsiI CCGC 5 cut(s) 120, 228, 237, 249, 273
SspMI CTAG 1 cut(s) 41
StuI AGGCCT 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 184
TaiI ACGT 1 cut(s) 75
TasI AATT 1 cut(s) 297
TauI GCSGC 1 cut(s) 231
TscAI CASTG 2 cut(s) 268, 319
TspDTI ATGAA 1 cut(s) 326
TspRI CASTG 2 cut(s) 268, 319
VpaK11BI GGWCC 1 cut(s) 182
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.