MD05G1181500.v1.1

Glycine-rich cell wall structural protein 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
30988377 .. 30988868
492 bp
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UTR
Exon/CDS
Intron
MD05G1181500.v1.1.491

Sequence Viewer

Length: 492 bp
ATGGCAAGGTGGTGCATTGTGGTGGTTCTTGCTCTAGTTGTAGCTCACACAACAGCTAGAAATGTGCCTATGCCAAATGACGCTGGTTTCAAAGACCAAAAGAACTTTATTGGTGGAGCTGGTGGCTTCTCAGGCGTTGGCGACAGTGGGCTCCCATTTGCTGGAGCAGGGGCAGGAGTTGGCGGCAGTCTTCCTGGCGGACTTGGTGGCGGCGCTGGAGGGATAGGTGGAGTTGCTGGCCTTGGAGGACTTGGTGGTGGTAGTGGTGGAATCGGTGGCTTAGGTGGTAGTGGTGGCTTACCCGGTTTTGGTGGCTTAGGCGGCGCTGGCGGTTTGGGTGGTGTCGGTGGACTGGGAGGGACAAGTGGCTTGGGTGGACTTGGTGGATTAGGTGGCGCGGCTGGTGGTGTTTTGGGCGGTGCTGGTGCAGGTGTTGGTGGGGGAGTCGGTGGTGGTGTTGGTGGTGGAAGTGGTGTTCTTCCTTACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

13.69

Weight (kDa)

7.96

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29030
fragaria_vesca FvH4_2g19680
malus_domestica MD05G1181500.v1.1
prunus_persica Prupe.8G208000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0285411
rosa_laevigata RLG00000012643
rosa_roxburghii Rroxscaffold_7G00183230
rosa_rugosa Rorug06G0174300
rosa_samantha Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana Rw6G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 161
AccII CGCG 1 cut(s) 398
AciI CCGC 7 cut(s) 183, 198, 210, 321, 330, 398, 417
AfiI CCNNNNNNNGG 2 cut(s) 161, 308
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 1 cut(s) 193
AloI GAACNNNNNNTCC 2 cut(s) 459, 491
AluBI AGCT 3 cut(s) 44, 56, 119
AluI AGCT 3 cut(s) 44, 56, 119
AoxI GGCC 1 cut(s) 238
AspLEI GCGC 3 cut(s) 215, 326, 398
AsuC2I CCSGG 1 cut(s) 303
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 1 cut(s) 303
BfaI CTAG 2 cut(s) 35, 57
BfoI RGCGCY 2 cut(s) 216, 327
BfuAI ACCTGC 1 cut(s) 419
BisI GCNGC 4 cut(s) 184, 211, 322, 399
BlsI GCNGC 4 cut(s) 185, 212, 323, 400
Bme1390I CCNGG 2 cut(s) 195, 303
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 2 cut(s) 195, 303
BmrI ACTGGG 1 cut(s) 362
BmuI ACTGGG 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 2 cut(s) 183, 237
Bpu10I CCTNAGC 2 cut(s) 280, 316
BpuMI CCSGG 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 308
Bse1I ACTGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 161, 308
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 357
BsgI GTGCAG 1 cut(s) 447
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 161, 308
BsmFI GGGAC 1 cut(s) 373
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 153
BspACI CCGC 7 cut(s) 183, 198, 210, 321, 330, 398, 417
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 143
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 152
BspMI ACCTGC 1 cut(s) 419
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 238, 328
BstDEI CTNAG 3 cut(s) 130, 280, 316
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 2 cut(s) 216, 327
BstHHI GCGC 3 cut(s) 215, 326, 398
BstMWI GCNNNNNNNGC 3 cut(s) 132, 321, 327
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 193, 301
BstUI CGCG 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 151
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 2 cut(s) 238, 328
CfoI GCGC 3 cut(s) 215, 326, 398
CseI GACGC 1 cut(s) 89
DdeI CTNAG 3 cut(s) 130, 280, 316
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 241
FaiI YATR 1 cut(s) 71
FaqI GGGAC 1 cut(s) 373
Fnu4HI GCNGC 4 cut(s) 184, 211, 322, 399
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 4 cut(s) 184, 211, 322, 399
FspBI CTAG 2 cut(s) 35, 57
GlaI GCGC 3 cut(s) 214, 325, 397
GluI GCNGC 4 cut(s) 184, 211, 322, 399
GsuI CTGGAG 2 cut(s) 183, 237
HaeII RGCGCY 2 cut(s) 216, 327
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 303
HgaI GACGC 1 cut(s) 89
HhaI GCGC 3 cut(s) 215, 326, 398
Hin6I GCGC 3 cut(s) 213, 324, 396
HinP1I GCGC 3 cut(s) 213, 324, 396
HinfI GANTC 2 cut(s) 270, 444
HpaII CCGG 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 350, 377
Hpy8I GTNNAC 2 cut(s) 350, 377
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 15, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 321, 327
HpyF3I CTNAG 3 cut(s) 130, 280, 316
HspAI GCGC 3 cut(s) 213, 324, 396
LmnI GCTCC 3 cut(s) 116, 156, 164
MaeI CTAG 2 cut(s) 35, 57
MboII GAAGA 2 cut(s) 182, 470
MhlI GDGCHC 1 cut(s) 153
MlyI GAGTC 1 cut(s) 453
MnlI CCTC 3 cut(s) 212, 239, 350
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 195, 303
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 3 cut(s) 132, 321, 327
NciI CCSGG 1 cut(s) 303
NlaIV GGNNCC 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 161
PkrI GCNGC 4 cut(s) 185, 212, 323, 400
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 4 cut(s) 184, 211, 322, 399
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 2 cut(s) 195, 303
SduI GDGCHC 1 cut(s) 153
SetI ASST 8 cut(s) 11, 46, 58, 121, 229, 286, 394, 433
SmiMI CAYNNNNRTG 1 cut(s) 20
SsiI CCGC 7 cut(s) 183, 198, 210, 321, 330, 398, 417
SspMI CTAG 2 cut(s) 35, 57
StyD4I CCNGG 2 cut(s) 193, 301
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 146
TauI GCSGC 4 cut(s) 186, 213, 324, 401
TfiI GAWTC 1 cut(s) 270
TscAI CASTG 1 cut(s) 151
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 161
XspI CTAG 2 cut(s) 35, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.