Rw6G024520

glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
47668932 .. 47669767
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024520.1

Sequence Viewer

Length: 489 bp
ATGGCAAGGTGGTGCATTGTGCTGGTTGTTCTTGCCCTAGCTGCAGTTCACACTACAGCAGGTAGGAATGTGCCTATGCCTAATGATGCTGGTTTCAAGGACCAGAAGAACATTATCGGCGGCGCTGGTGGCTTCTCTGGAGTTGGTGCCAACGGATTGCCCTTCGGTGGTGCTGGGGCCGGAGTTGGCGGCAATGTTGGCGGAGTAGGTGGTGGTGTTGGGATTGGTGGATTTGGCGGGCTAGGCGGTACTGGTGGAGTTGGTGGTGTCCCTGACTTGGGTGGTGCTGGTGGCTTGGGTGGTCTCGGTGGACTAGGAGGCACTGGCGGGCTAGGCGGCTTGGGCGGTACTGGTGGTGTTGGCGGATTAGGCGGTACTGGTGGCTTTGGGGGACTTGGTAGCGGCATACTGGGAGGTGCTGGGGGCGGCGTTGGTGGTGGATTTGGTGGTGGATTTGGTGGTGGAAGCGGTGTTCTTCCTCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

13.75

Weight (kDa)

7.98

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29030
fragaria_vesca FvH4_2g19680
malus_domestica MD05G1181500.v1.1
prunus_persica Prupe.8G208000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0285411
rosa_laevigata RLG00000012643
rosa_roxburghii Rroxscaffold_7G00183230
rosa_rugosa Rorug06G0174300
rosa_samantha Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana Rw6G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 146
AfaI GTAC 3 cut(s) 250, 349, 376
AfiI CCNNNNNNNGG 3 cut(s) 167, 277, 278
AgsI TTSAA 1 cut(s) 97
AloI GAACNNNNNNTCC 2 cut(s) 456, 488
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 308
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 100, 177
AvaII GGWCC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 4 cut(s) 38, 242, 314, 332
BfmI CTRYAG 2 cut(s) 42, 54
BfoI RGCGCY 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 6 cut(s) 42, 121, 190, 337, 403, 427
BlsI GCNGC 6 cut(s) 43, 122, 191, 338, 404, 428
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 100, 177
BmiI GGNNCC 2 cut(s) 148, 178
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 308
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 277, 278
Bse1I ACTGG 5 cut(s) 256, 328, 355, 382, 414
Bse3DI GCAATG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 167, 277, 278
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 5 cut(s) 256, 328, 355, 382, 414
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 2 cut(s) 173, 419
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 254, 405
BslI CCNNNNNNNGG 3 cut(s) 167, 277, 278
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 254, 405
BsnI GGCC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 308
BspANI GGCC 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 148, 178
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 5 cut(s) 256, 328, 355, 382, 414
BstC8I GCNNGC 2 cut(s) 239, 329
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 308
BstMWI GCNNNNNNNGC 7 cut(s) 41, 129, 198, 243, 333, 342, 369
BstSFI CTRYAG 2 cut(s) 42, 54
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 239, 329
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 100, 177
Csp6I GTAC 3 cut(s) 249, 348, 375
CviJI RGCY 8 cut(s) 41, 132, 179, 241, 294, 331, 339, 384
CviKI_1 RGCY 8 cut(s) 41, 132, 179, 241, 294, 331, 339, 384
CviQI GTAC 3 cut(s) 249, 348, 375
EciI GGCGGA 2 cut(s) 216, 378
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 100
FaiI YATR 2 cut(s) 77, 407
FaqI GGGAC 2 cut(s) 254, 405
FauI CCCGC 2 cut(s) 230, 320
Fnu4HI GCNGC 6 cut(s) 42, 121, 190, 337, 403, 427
Fsp4HI GCNGC 6 cut(s) 42, 121, 190, 337, 403, 427
FspBI CTAG 4 cut(s) 38, 242, 314, 332
GlaI GCGC 1 cut(s) 124
GluI GCNGC 6 cut(s) 42, 121, 190, 337, 403, 427
GsaI CCCAGC 2 cut(s) 177, 423
GsuI CTGGAG 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HpaII CCGG 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 49, 311
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 2 cut(s) 49, 311
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 15, 44
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 129, 198, 243, 333, 342, 369
HspAI GCGC 1 cut(s) 123
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 76
MaeI CTAG 4 cut(s) 38, 242, 314, 332
MboII GAAGA 2 cut(s) 118, 467
MnlI CCTC 3 cut(s) 311, 407, 489
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 7 cut(s) 41, 129, 198, 243, 333, 342, 369
NlaIV GGNNCC 2 cut(s) 148, 178
PkrI GCNGC 6 cut(s) 43, 122, 191, 338, 404, 428
PspFI CCCAGC 2 cut(s) 173, 419
PspN4I GGNNCC 2 cut(s) 148, 178
PspPI GGNCC 2 cut(s) 100, 177
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 3 cut(s) 250, 349, 376
RsaNI GTAC 3 cut(s) 249, 348, 375
SatI GCNGC 6 cut(s) 42, 121, 190, 337, 403, 427
Sau96I GGNCC 2 cut(s) 100, 177
SetI ASST 6 cut(s) 11, 43, 64, 211, 418, 487
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 2 cut(s) 42, 54
SinI GGWCC 1 cut(s) 100
SspMI CTAG 4 cut(s) 38, 242, 314, 332
TauI GCSGC 5 cut(s) 123, 192, 339, 405, 429
TscAI CASTG 1 cut(s) 328
TseI GCWGC 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 100
XspI CTAG 4 cut(s) 38, 242, 314, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.