FvH4_2g19680

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017184
Physical Location & Seq
Forward (+)
16644190 .. 16645083
894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19680.t1

Sequence Viewer

Length: 495 bp
ATGGCAAGGTTGTGCATTGTGCTGGTTGTTTTTGCCCTAGCTGCAGTTCACACTACAGCAGGTAGGAATGTCCCTATGGCGCCGAACGATGTTGGTTTCAATGACCAGAAGAACTTCATAGGAGGCGCTGGTGGCTTCTCTGGAATTGGTTCTGACGGACTCCCCTTCGGTGGTGCTGGGGCTGGGATGGGCGGCAATGTTGGAGGACTTGGTGGTGGTGTTGGGATTGGTGGAGTTGGCGGACTAGGCAGCACTGGTGGACTTGGTGGTCTCCCTAACTTGGGTGGTACTGGTGGTTTGGGTGGTCTTGGCGGACTAGGTGGTGGTGCTGGAGGACTAGGTGGCCTGGGCGGTGCTGGTGGTCTTGGCGGAGCAGGAGGCACTGGTGGCTTTGGGGGACTTGGTAGCGGAATTCTGGGTGGTGCTGGGGGAGGTGCTGGAAGTGGATTCGGCGGTGGTGTTGGTGGTGGAAGCGGTGTTCTTCCTTACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

13.91

Weight (kDa)

6.5

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29030
fragaria_vesca FvH4_2g19680
malus_domestica MD05G1181500.v1.1
prunus_persica Prupe.8G208000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0285411
rosa_laevigata RLG00000012643
rosa_roxburghii Rroxscaffold_7G00183230
rosa_rugosa Rorug06G0174300
rosa_samantha Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana Rw6G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 8 cut(s) 192, 240, 312, 351, 369, 408, 453, 474
AcsI RAATTY 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 3 cut(s) 170, 280, 281
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 1 cut(s) 345
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 275
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 2 cut(s) 41, 249
ApoI RAATTY 1 cut(s) 411
Asp700I GAANNNNTTC 2 cut(s) 113, 148
AspLEI GCGC 2 cut(s) 82, 128
BanI GGYRCC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 28, 261
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 4 cut(s) 38, 245, 317, 338
BfmI CTRYAG 2 cut(s) 42, 54
BfoI RGCGCY 2 cut(s) 83, 129
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 3 cut(s) 42, 193, 250
BlsI GCNGC 3 cut(s) 43, 194, 251
Bme1390I CCNGG 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 280, 281
Bse1I ACTGG 3 cut(s) 259, 295, 388
Bse3DI GCAATG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 3 cut(s) 170, 280, 281
BseMI GCAATG 1 cut(s) 202
BseNI ACTGG 3 cut(s) 259, 295, 388
BseXI GCAGC 2 cut(s) 28, 261
BseYI CCCAGC 3 cut(s) 176, 182, 425
BshFI GGCC 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 79
BslFI GGGAC 2 cut(s) 56, 411
BslI CCNNNNNNNGG 3 cut(s) 170, 280, 281
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 56, 411
BsnI GGCC 1 cut(s) 345
Bso31I GGTCTC 1 cut(s) 275
BspACI CCGC 8 cut(s) 192, 240, 312, 351, 369, 408, 453, 474
BspANI GGCC 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 81
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 3 cut(s) 259, 295, 388
BssECI CCNNGG 1 cut(s) 346
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 347
BstACI GRCGYC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 192
BstH2I RGCGCY 2 cut(s) 83, 129
BstHHI GCGC 2 cut(s) 82, 128
BstMAI GTCTC 1 cut(s) 275
BstMWI GCNNNNNNNGC 4 cut(s) 41, 132, 246, 387
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 2 cut(s) 42, 54
BstV1I GCAGC 2 cut(s) 28, 261
BsuRI GGCC 1 cut(s) 345
BtsCI GGATG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 252, 381
BveI ACCTGC 1 cut(s) 50
CfoI GCGC 2 cut(s) 82, 128
Csp6I GTAC 1 cut(s) 288
CviJI RGCY 5 cut(s) 41, 135, 182, 345, 390
CviKI_1 RGCY 5 cut(s) 41, 135, 182, 345, 390
CviQI GTAC 1 cut(s) 288
DinI GGCGCC 1 cut(s) 81
DrdI GACNNNNNNGTC 1 cut(s) 267
DseDI GACNNNNNNGTC 1 cut(s) 267
EciI GGCGGA 3 cut(s) 255, 327, 384
Eco31I GGTCTC 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 345
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
FaiI YATR 2 cut(s) 77, 119
FaqI GGGAC 2 cut(s) 56, 411
Fnu4HI GCNGC 3 cut(s) 42, 193, 250
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 3 cut(s) 42, 193, 250
FspBI CTAG 4 cut(s) 38, 245, 317, 338
GlaI GCGC 2 cut(s) 81, 127
GluI GCNGC 3 cut(s) 42, 193, 250
GsaI CCCAGC 3 cut(s) 180, 186, 429
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 2 cut(s) 83, 129
HaeIII GGCC 1 cut(s) 345
HhaI GCGC 2 cut(s) 82, 128
Hin1I GRCGYC 1 cut(s) 80
Hin6I GCGC 2 cut(s) 80, 126
HinP1I GCGC 2 cut(s) 80, 126
HinfI GANTC 2 cut(s) 159, 447
Hpy166II GTNNAC 2 cut(s) 49, 260
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 141
Hpy8I GTNNAC 2 cut(s) 49, 260
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 15, 44
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 132, 246, 387
Hsp92I GRCGYC 1 cut(s) 80
HspAI GCGC 2 cut(s) 80, 126
KasI GGCGCC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 2 cut(s) 28, 261
MaeI CTAG 4 cut(s) 38, 245, 317, 338
MboII GAAGA 2 cut(s) 121, 473
MluCI AATT 2 cut(s) 144, 411
Mly113I GGCGCC 1 cut(s) 80
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 5 cut(s) 116, 197, 326, 371, 425
MroXI GAANNNNTTC 2 cut(s) 113, 148
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 4 cut(s) 41, 132, 246, 387
NarI GGCGCC 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 81
PdmI GAANNNNTTC 2 cut(s) 113, 148
PfeI GAWTC 1 cut(s) 447
PkrI GCNGC 3 cut(s) 43, 194, 251
PleI GAGTC 1 cut(s) 153
PluTI GGCGCC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 345
PspFI CCCAGC 3 cut(s) 176, 182, 425
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SatI GCNGC 3 cut(s) 42, 193, 250
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 347
SetI ASST 6 cut(s) 11, 43, 64, 322, 343, 436
SfcI CTRYAG 2 cut(s) 42, 54
SfoI GGCGCC 1 cut(s) 81
Sse9I AATT 2 cut(s) 144, 411
SsiI CCGC 8 cut(s) 192, 240, 312, 351, 369, 408, 453, 474
SspDI GGCGCC 1 cut(s) 79
SspMI CTAG 4 cut(s) 38, 245, 317, 338
StyD4I CCNGG 1 cut(s) 345
TasI AATT 2 cut(s) 144, 411
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 447
TscAI CASTG 2 cut(s) 259, 388
TseI GCWGC 2 cut(s) 41, 249
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 2 cut(s) 259, 388
XapI RAATTY 1 cut(s) 411
XmnI GAANNNNTTC 2 cut(s) 113, 148
XspI CTAG 4 cut(s) 38, 245, 317, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.