Prupe.8G208000_v2.0.a1

Glycine-rich cell wall structural protein 1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
19398044 .. 19398855
812 bp
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UTR
Exon/CDS
Intron
Prupe.8G208000.1

Sequence Viewer

Length: 489 bp
ATGGCAAGGTGGTGCATTGTGCTGGTTCTTGCTCTAGTTGTAGCTCACACTACAGCTAGAAACGTGCCTACAGCGAATGACGCTGGTTTCAAAGACCAAAAGAACTTCCTCGGTGGCGTTGGTGGCTTCTCTGGTATTGGCAGCAATGGGCTTCCATTTGCTGGAGCAGGGGCTGGTGTTGGTGGTGATCTTGGCGGCGGACTTGGTGGAGGCGCTGGGATAGGCGGAGTTGCCGGGCTTGGTGGTGGTAGTGGTGGAATCGGTGACTTGGGTGGTGCAGGCGGCTTGGGTGGTCTTGGTGGTTTAGGCGGCGGCACCGGAGGCTTGGGTGGTCTAGGGGGCTTAGGAGGCGGCACCGGAGGCTTGGGTGGTCTAGGAGGCTTAGGAGGCGGCACCGGAGGCTTGGGGGTTCTTGGTGGAGTAGGCGGTGCTGGTGGCGGCATTGGCGGCGGTGTTGGTGGTGGAAGTGGTGTTCTTCCCTACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

13.62

Weight (kDa)

6.5

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29030
fragaria_vesca FvH4_2g19680
malus_domestica MD05G1181500.v1.1
prunus_persica Prupe.8G208000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0285411
rosa_laevigata RLG00000012643
rosa_roxburghii Rroxscaffold_7G00183230
rosa_rugosa Rorug06G0174300
rosa_samantha Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana Rw6G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 314, 353, 392
AccB7I CCANNNNNTGG 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 91
AloI GAACNNNNNNTCC 2 cut(s) 456, 488
AluBI AGCT 2 cut(s) 44, 56
AluI AGCT 2 cut(s) 44, 56
AlwNI CAGNNNCTG 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 197, 275
BanI GGYRCC 3 cut(s) 314, 353, 392
BbvI GCAGC 1 cut(s) 153
BcnI CCSGG 1 cut(s) 235
BfaI CTAG 4 cut(s) 35, 57, 335, 374
BfmI CTRYAG 2 cut(s) 51, 69
BfoI RGCGCY 1 cut(s) 216
BisI GCNGC 9 cut(s) 142, 196, 283, 310, 313, 352, 391, 439, 448
BlsI GCNGC 9 cut(s) 143, 197, 284, 311, 314, 353, 392, 440, 449
Bme1390I CCNGG 1 cut(s) 235
BmiI GGNNCC 3 cut(s) 316, 355, 394
BmrFI CCNGG 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 2 cut(s) 343, 382
BpuMI CCSGG 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 3 cut(s) 317, 356, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 153
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 297
BshNI GGYRCC 3 cut(s) 314, 353, 392
BsiSI CCGG 4 cut(s) 234, 318, 357, 396
BslI CCNNNNNNNGG 1 cut(s) 161
Bsp143I GATC 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 316, 355, 394
BspT107I GGYRCC 3 cut(s) 314, 353, 392
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 343, 382
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 9 cut(s) 80, 123, 321, 348, 360, 387, 399, 444, 447
BstSCI CCNGG 1 cut(s) 233
BstSFI CTRYAG 2 cut(s) 51, 69
BstV1I GCAGC 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 280
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 215
CseI GACGC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 343, 382
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EciI GGCGGA 2 cut(s) 213, 240
Fnu4HI GCNGC 9 cut(s) 142, 196, 283, 310, 313, 352, 391, 439, 448
Fsp4HI GCNGC 9 cut(s) 142, 196, 283, 310, 313, 352, 391, 439, 448
FspBI CTAG 4 cut(s) 35, 57, 335, 374
GlaI GCGC 1 cut(s) 214
GluI GCNGC 9 cut(s) 142, 196, 283, 310, 313, 352, 391, 439, 448
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 216
HapII CCGG 4 cut(s) 234, 318, 357, 396
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 215
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 1 cut(s) 258
HpaII CCGG 4 cut(s) 234, 318, 357, 396
HphI GGTGA 2 cut(s) 197, 275
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 15, 278
HpyF10VI GCNNNNNNNGC 9 cut(s) 80, 123, 321, 348, 360, 387, 399, 444, 447
HpyF3I CTNAG 2 cut(s) 343, 382
HpySE526I ACGT 1 cut(s) 63
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 1 cut(s) 153
MaeI CTAG 4 cut(s) 35, 57, 335, 374
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 467
MnlI CCTC 8 cut(s) 119, 203, 314, 341, 353, 371, 380, 392
MspI CCGG 4 cut(s) 234, 318, 357, 396
MspR9I CCNGG 1 cut(s) 235
MwoI GCNNNNNNNGC 9 cut(s) 80, 123, 321, 348, 360, 387, 399, 444, 447
NciI CCSGG 1 cut(s) 235
NdeII GATC 1 cut(s) 187
NlaIV GGNNCC 3 cut(s) 316, 355, 394
NmuCI GTSAC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 161
PkrI GCNGC 9 cut(s) 143, 197, 284, 311, 314, 353, 392, 440, 449
PspFI CCCAGC 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 316, 355, 394
PstNI CAGNNNCTG 1 cut(s) 173
SatI GCNGC 9 cut(s) 142, 196, 283, 310, 313, 352, 391, 439, 448
Sau3AI GATC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 235
SetI ASST 4 cut(s) 11, 46, 58, 66
SfcI CTRYAG 2 cut(s) 51, 69
SspMI CTAG 4 cut(s) 35, 57, 335, 374
StyD4I CCNGG 1 cut(s) 233
TaiI ACGT 1 cut(s) 66
TauI GCSGC 8 cut(s) 198, 285, 312, 315, 354, 393, 441, 450
TfiI GAWTC 1 cut(s) 258
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 161
XspI CTAG 4 cut(s) 35, 57, 335, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.