Rorug06G0174300

Glycine-rich cell wall structural protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
27153466 .. 27155425
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0174300.1

Sequence Viewer

Length: 1857 bp
ATGAGTTTCCACATGCCAATGGACGATGTAGAAATTGAAACTGAGCAACCTACGAATGCTAACTCTGCTCCATCATCTTCTTATCGTAGCAAGAGAAGGCGCATAGAATATTATGACAATGTTGCATTTATGGACACCAATGAAGATATTTTGGTAAGTCAGTTATATCCGAGTAAGAAAGCCTTGAAACAACATTTGGGCATGCTCGCAATAAGAAAGAATTACGAGTTTAAAGTGAACAAATCTGCTAGTGATCGGTTTGAAGTTAGGTGTGTGGATCCTAACTGTAAGTGGCGACTCCGTGCAATAAAGCTACAAGACTTGGCCTATTTTGAAGTAAGAAAGTTTCATAATGAACATTCTTGTTCGTTGGATATTATTCATCGTGATCATCGACAAGCAAGCAGCTCCCTAATTGGTCAATATGTCAAGTCAAAGTTTGAGGGAGGAACCTCGCGTATATACAGACCTAGAGATATCATTGATGATGCGCGTGTCCAACTAGGAGTTAATATGGGCTATAATAAAGCTTGGAGGGCAAGAGAAGCAGGACTAGAAACTGCAAGGGGATTACCAGAGGAATCATTTGCTGTACTTCCAACATATTATGCTATGTTAGAGCGCAAAAATCAAGGTACAATAACACACATAGAAACTGATGAACAGAATCACTTTCTATACTTTTTCATGGCAATTGGAGCCTCAATTAGAGGATTTCGTGATTCTGTGAGGCCCGTGATCGCTATAGATGGTGCATTTTTGAAAGGAAAGTACTTTGGAACCATGTTTGTGGCTGCATGCCAAGATGGAGAGAATCAAATATATCTTTTGGCATTTGGGGTGGTAGACTCGGAAAATGATGCCTCATGGTCATGGTTTTTGACAAAATTGAGAGGGGCCATTGGAGTTGTAGAGAACTTGATTTTTATATCTGATCGACATGGAAGCATTGCCAAAGCTGTGGATAATGTTTTTCCTGAAGCACATCATGGAGTCTGCATCTTTCATATAGCTAACAACCTGCAATCAAAGTTTGGCAAAAAAATGAAGATCCTTAAGTTATATTACACAGCAACAAAGAAGTACCAAGTATCTGAGTTCAATACATTGATGGATGACATTCGAAAAATAAAAGATGGAGAAGTCTGTAAATATCTTGAAGACATTGGGTGTCATAAGTGGGCACGAGGTCATTTTATGGGGTACAGATACAACATGATGACATCCAACATTGCTGAATCTATGAACTCGAAGCTTAAAGATGCTAGAAAACTACCAATTACTGCTTTAGTGGATCACCTAAGAGAGGTGCTTCAACAATGGTTTGTTGAACGACGTGATGCAGCAAGCTCCCTTAATACACACTTAACCAAATGGGCAGAAGACAAAGTGTACAAAAACAACAATAGTGGTTCGCATATGCGGATGTCTCCAATTGATCTCTATGCATTTCAAATACATGATCAAAGTCAAACATTTACAGTGGACTTAAATAACATGACTTGTACATGTCGAGAGTTTGATCTTGATCGACTTCCTTGTGCCCATGCAACTGTTGCCTGTAGAACTAAAGGAATATCAGTGTATAGCATGTGCTCCCAATTTTACACAGCCAATGCACTTATGTTAGCGTATGCAGAGCCTATTTGGCCAGTTGGGAATAAAAGTGAGTGGGATGTGGCTGAAGACGTGCAGAACAAAATTGTCTTACCTCCAATAAGACAAGTAGTACCTGGAAGACGTAAGGCGGTACGAATTCCATCAGTAGGAGAAGATGCAATTAGAAAAAAGTGTACAAGATGCGGTGGAGGAGGTCATAACCGTGCAACTTGCCAAAATCCAATTCCACTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

618

Amino Acids

70.68

Weight (kDa)

8.98

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 53 - 113 9.1e-10 MuDR family transposase
MULE PF10551 246 - 340 1.8e-23 MULE transposase domain
Transposase_mut PF00872 267 - 423 1e-12 Transposase, Mutator family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29030
fragaria_vesca FvH4_2g19680
malus_domestica MD05G1181500.v1.1
prunus_persica Prupe.8G208000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0285411
rosa_laevigata RLG00000012643
rosa_roxburghii Rroxscaffold_7G00183230
rosa_rugosa Rorug06G0174300
rosa_samantha Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana Rw6G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1029
AccI GTMKAC 1 cut(s) 846
AccII CGCG 2 cut(s) 457, 493
AciI CCGC 3 cut(s) 1423, 1748, 1803
AclWI GGATC 4 cut(s) 272, 285, 1045, 1302
AcoI YGGCCR 1 cut(s) 1649
AcsI RAATTY 1 cut(s) 1755
AcuI CTGAAG 2 cut(s) 999, 1704
AfiI CCNNNNNNNGG 2 cut(s) 1306, 1766
AflII CTTAAG 1 cut(s) 1055
AflIII ACRYGT 1 cut(s) 1508
AjiI CACGTC 2 cut(s) 1337, 1690
AjnI CCWGG 1 cut(s) 1732
AjuI GAANNNNNNNTTGG 3 cut(s) 179, 211, 1827
AluBI AGCT 7 cut(s) 313, 408, 530, 959, 1013, 1255, 1350
AluI AGCT 7 cut(s) 313, 408, 530, 959, 1013, 1255, 1350
Alw21I GWGCWC 1 cut(s) 1598
Alw26I GTCTC 1 cut(s) 1434
AlwI GGATC 4 cut(s) 272, 285, 1045, 1302
AoxI GGCC 4 cut(s) 324, 731, 897, 1649
ApeKI GCWGC 3 cut(s) 405, 794, 1343
ApoI RAATTY 1 cut(s) 1755
AspLEI GCGC 3 cut(s) 102, 493, 624
AspS9I GGNCC 2 cut(s) 732, 897
AsuHPI GGTGA 1 cut(s) 1289
AsuII TTCGAA 1 cut(s) 1123
BaeGI GKGCMC 2 cut(s) 1186, 1546
BalI TGGCCA 1 cut(s) 1651
BamHI GGATCC 1 cut(s) 277
BauI CACGAG 1 cut(s) 1185
BbsI GAAGAC 4 cut(s) 1167, 1389, 1692, 1744
Bbv12I GWGCWC 1 cut(s) 1598
BbvI GCAGC 3 cut(s) 417, 781, 1355
BccI CCATC 6 cut(s) 79, 743, 800, 1105, 1130, 1768
BciT130I CCWGG 1 cut(s) 1734
BclI TGATCA 2 cut(s) 388, 1462
BcoDI GTCTC 1 cut(s) 1434
BfaI CTAG 5 cut(s) 249, 471, 503, 554, 1266
BfmI CTRYAG 2 cut(s) 744, 1561
BfrI CTTAAG 1 cut(s) 1055
BfuAI ACCTGC 1 cut(s) 1029
BglI GCCNNNNNGGC 1 cut(s) 1648
BisI GCNGC 3 cut(s) 406, 795, 1344
BlsI GCNGC 3 cut(s) 407, 796, 1345
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 1 cut(s) 1734
BmgBI CACGTC 2 cut(s) 1337, 1690
BmgT120I GGNCC 2 cut(s) 732, 897
BmiI GGNNCC 5 cut(s) 279, 451, 700, 781, 898
BmrFI CCNGG 1 cut(s) 1734
BmsI GCATC 7 cut(s) 478, 850, 1008, 1252, 1330, 1765, 1790
BpiI GAAGAC 4 cut(s) 1167, 1389, 1692, 1744
Bpu14I TTCGAA 1 cut(s) 1123
BsaBI GATNNNNATC 1 cut(s) 1527
Bsc4I CCNNNNNNNGG 2 cut(s) 1306, 1766
Bse1I ACTGG 1 cut(s) 1652
Bse3DI GCAATG 2 cut(s) 948, 1230
Bse8I GATNNNNATC 1 cut(s) 1527
BseBI CCWGG 1 cut(s) 1734
BseGI GGATG 4 cut(s) 1120, 1223, 1431, 1681
BseJI GATNNNNATC 1 cut(s) 1527
BseLI CCNNNNNNNGG 2 cut(s) 1306, 1766
BseMI GCAATG 2 cut(s) 948, 1230
BseMII CTCAG 2 cut(s) 33, 1086
BseNI ACTGG 1 cut(s) 1652
BseRI GAGGAG 1 cut(s) 1824
BseSI GKGCMC 2 cut(s) 1186, 1546
BseXI GCAGC 3 cut(s) 417, 781, 1355
BsgI GTGCAG 1 cut(s) 1712
Bsh1236I CGCG 2 cut(s) 457, 493
BshFI GGCC 4 cut(s) 326, 733, 899, 1651
BsiHKAI GWGCWC 1 cut(s) 1598
BslI CCNNNNNNNGG 2 cut(s) 1306, 1766
BsmAI GTCTC 1 cut(s) 1434
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 4 cut(s) 326, 733, 899, 1651
Bsp119I TTCGAA 1 cut(s) 1123
Bsp1286I GDGCHC 3 cut(s) 1186, 1546, 1598
Bsp1407I TGTACA 3 cut(s) 1392, 1505, 1793
BspACI CCGC 3 cut(s) 1423, 1748, 1803
BspANI GGCC 4 cut(s) 326, 733, 899, 1651
BspCNI CTCAG 2 cut(s) 34, 1087
BspFNI CGCG 2 cut(s) 457, 493
BspLI GGNNCC 5 cut(s) 279, 451, 700, 781, 898
BspMI ACCTGC 1 cut(s) 1029
BspPI GGATC 4 cut(s) 272, 285, 1045, 1302
BspT104I TTCGAA 1 cut(s) 1123
BspTI CTTAAG 1 cut(s) 1055
BsrDI GCAATG 2 cut(s) 948, 1230
BsrGI TGTACA 3 cut(s) 1392, 1505, 1793
BsrI ACTGG 1 cut(s) 1652
BssSI CACGAG 1 cut(s) 1185
Bst2BI CACGAG 1 cut(s) 1185
Bst2UI CCWGG 1 cut(s) 1734
Bst4CI ACNGT 4 cut(s) 287, 1483, 1555, 1823
BstAFI CTTAAG 1 cut(s) 1055
BstAPI GCANNNNNTGC 1 cut(s) 1556
BstAUI TGTACA 3 cut(s) 1392, 1505, 1793
BstBI TTCGAA 1 cut(s) 1123
BstC8I GCNNGC 5 cut(s) 203, 207, 403, 799, 1348
BstDEI CTNAG 3 cut(s) 42, 1095, 1301
BstENI CCTNNNNNAGG 1 cut(s) 1304
BstF5I GGATG 4 cut(s) 1120, 1223, 1431, 1681
BstFNI CGCG 2 cut(s) 457, 493
BstHHI GCGC 3 cut(s) 102, 493, 624
BstMAI GTCTC 1 cut(s) 1434
BstMWI GCNNNNNNNGC 6 cut(s) 65, 536, 545, 698, 1556, 1648
BstNI CCWGG 1 cut(s) 1734
BstNSI RCATGY 5 cut(s) 16, 205, 801, 1512, 1594
BstSCI CCNGG 1 cut(s) 1732
BstSFI CTRYAG 2 cut(s) 744, 1561
BstSLI GKGCMC 2 cut(s) 1186, 1546
BstUI CGCG 2 cut(s) 457, 493
BstV1I GCAGC 3 cut(s) 417, 781, 1355
BstV2I GAAGAC 4 cut(s) 1167, 1389, 1692, 1744
BstX2I RGATCY 2 cut(s) 277, 1050
BstXI CCANNNNNNTGG 2 cut(s) 790, 961
BstYI RGATCY 2 cut(s) 277, 1050
BsuRI GGCC 4 cut(s) 326, 733, 899, 1651
BtrI CACGTC 2 cut(s) 1337, 1690
BtsCI GGATG 4 cut(s) 1120, 1223, 1431, 1681
BtsIMutI CAGTG 2 cut(s) 1488, 1587
BveI ACCTGC 1 cut(s) 1029
Cac8I GCNNGC 5 cut(s) 203, 207, 403, 799, 1348
CfoI GCGC 3 cut(s) 102, 493, 624
Cfr13I GGNCC 2 cut(s) 732, 897
CspCI CAANNNNNGTGG 2 cut(s) 1390, 1425
DdeI CTNAG 3 cut(s) 42, 1095, 1301
DraI TTTAAA 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 1649
Eco32I GATATC 1 cut(s) 478
Eco57I CTGAAG 2 cut(s) 999, 1704
EcoNI CCTNNNNNAGG 1 cut(s) 1304
EcoRI GAATTC 1 cut(s) 1755
EcoRII CCWGG 1 cut(s) 1732
EcoRV GATATC 1 cut(s) 478
EcoT22I ATGCAT 1 cut(s) 1450
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FauNDI CATATG 1 cut(s) 1419
FbaI TGATCA 2 cut(s) 388, 1462
FblI GTMKAC 1 cut(s) 846
Fnu4HI GCNGC 3 cut(s) 406, 795, 1344
FokI GGATG 4 cut(s) 1127, 1210, 1438, 1688
Fsp4HI GCNGC 3 cut(s) 406, 795, 1344
FspBI CTAG 5 cut(s) 249, 471, 503, 554, 1266
GlaI GCGC 3 cut(s) 101, 492, 623
GluI GCNGC 3 cut(s) 406, 795, 1344
HaeIII GGCC 4 cut(s) 326, 733, 899, 1651
HhaI GCGC 3 cut(s) 102, 493, 624
Hin6I GCGC 3 cut(s) 100, 491, 622
HinP1I GCGC 3 cut(s) 100, 491, 622
HindIII AAGCTT 2 cut(s) 528, 1253
HinfI GANTC 8 cut(s) 297, 581, 667, 722, 814, 848, 993, 1238
HphI GGTGA 1 cut(s) 1289
Hpy166II GTNNAC 5 cut(s) 238, 847, 1393, 1486, 1794
Hpy188I TCNGA 4 cut(s) 171, 853, 934, 1096
Hpy188III TCNNGA 6 cut(s) 386, 719, 977, 1157, 1514, 1526
Hpy8I GTNNAC 5 cut(s) 238, 847, 1393, 1486, 1794
Hpy99I CGWCG 1 cut(s) 1338
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 4 cut(s) 287, 1483, 1555, 1823
HpyCH4IV ACGT 3 cut(s) 1336, 1689, 1741
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 536, 545, 698, 1556, 1648
HpyF3I CTNAG 3 cut(s) 42, 1095, 1301
HpySE526I ACGT 3 cut(s) 1336, 1689, 1741
HspAI GCGC 3 cut(s) 100, 491, 622
Ksp22I TGATCA 2 cut(s) 388, 1462
LmnI GCTCC 5 cut(s) 73, 413, 698, 1355, 1601
LpnPI CCDG 8 cut(s) 534, 588, 990, 1034, 1573, 1665, 1719, 1746
Lsp1109I GCAGC 3 cut(s) 417, 781, 1355
LweI GCATC 7 cut(s) 478, 850, 1008, 1252, 1330, 1765, 1790
MaeI CTAG 5 cut(s) 249, 471, 503, 554, 1266
MaeII ACGT 3 cut(s) 1336, 1689, 1741
MboII GAAGA 8 cut(s) 69, 155, 1060, 1172, 1394, 1697, 1749, 1784
MfeI CAATTG 2 cut(s) 693, 1434
MflI RGATCY 2 cut(s) 277, 1050
MhlI GDGCHC 3 cut(s) 1186, 1546, 1598
MlsI TGGCCA 1 cut(s) 1651
MluNI TGGCCA 1 cut(s) 1651
MlyI GAGTC 3 cut(s) 291, 842, 1002
MmeI TCCRAC 4 cut(s) 351, 523, 623, 1251
Mox20I TGGCCA 1 cut(s) 1651
Mph1103I ATGCAT 1 cut(s) 1450
MscI TGGCCA 1 cut(s) 1651
MseI TTAA 7 cut(s) 231, 510, 1056, 1257, 1356, 1367, 1490
MslI CAYNNNNRTG 4 cut(s) 17, 788, 871, 1821
Msp20I TGGCCA 1 cut(s) 1651
MspCI CTTAAG 1 cut(s) 1055
MspR9I CCNGG 1 cut(s) 1734
MunI CAATTG 2 cut(s) 693, 1434
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 1 cut(s) 1734
MvnI CGCG 2 cut(s) 457, 493
MwoI GCNNNNNNNGC 6 cut(s) 65, 536, 545, 698, 1556, 1648
NdeI CATATG 1 cut(s) 1419
NlaIV GGNNCC 5 cut(s) 279, 451, 700, 781, 898
NsiI ATGCAT 1 cut(s) 1450
NspI RCATGY 5 cut(s) 16, 205, 801, 1512, 1594
NspV TTCGAA 1 cut(s) 1123
PaeI GCATGC 2 cut(s) 205, 801
PciI ACATGT 1 cut(s) 1508
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PctI GAATGC 1 cut(s) 61
PfeI GAWTC 5 cut(s) 581, 667, 722, 814, 1238
PkrI GCNGC 3 cut(s) 407, 796, 1345
PleI GAGTC 3 cut(s) 291, 842, 1001
PpsI GAGTC 3 cut(s) 291, 842, 1001
PscI ACATGT 1 cut(s) 1508
Psp6I CCWGG 1 cut(s) 1732
PspGI CCWGG 1 cut(s) 1732
PspN4I GGNNCC 5 cut(s) 279, 451, 700, 781, 898
PspPI GGNCC 2 cut(s) 732, 897
PsuI RGATCY 2 cut(s) 277, 1050
RseI CAYNNNNRTG 4 cut(s) 17, 788, 871, 1821
SaqAI TTAA 7 cut(s) 231, 510, 1056, 1257, 1356, 1367, 1490
SatI GCNGC 3 cut(s) 406, 795, 1344
Sau96I GGNCC 2 cut(s) 732, 897
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 3 cut(s) 291, 842, 1002
ScrFI CCNGG 1 cut(s) 1734
SduI GDGCHC 3 cut(s) 1186, 1546, 1598
SfaNI GCATC 7 cut(s) 478, 850, 1008, 1252, 1330, 1765, 1790
SfcI CTRYAG 2 cut(s) 744, 1561
SfuI TTCGAA 1 cut(s) 1123
SmiMI CAYNNNNRTG 4 cut(s) 17, 788, 871, 1821
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
SphI GCATGC 2 cut(s) 205, 801
SsiI CCGC 3 cut(s) 1423, 1748, 1803
SspI AATATT 1 cut(s) 110
SspMI CTAG 5 cut(s) 249, 471, 503, 554, 1266
StyD4I CCNGG 1 cut(s) 1732
TaaI ACNGT 4 cut(s) 287, 1483, 1555, 1823
TaiI ACGT 3 cut(s) 1339, 1692, 1744
TaqI TCGA 6 cut(s) 394, 937, 1123, 1250, 1513, 1531
TatI WGTACW 5 cut(s) 592, 771, 1392, 1505, 1793
TfiI GAWTC 5 cut(s) 581, 667, 722, 814, 1238
Tru1I TTAA 7 cut(s) 231, 510, 1056, 1257, 1356, 1367, 1490
Tru9I TTAA 7 cut(s) 231, 510, 1056, 1257, 1356, 1367, 1490
TscAI CASTG 2 cut(s) 1488, 1587
TseI GCWGC 3 cut(s) 405, 794, 1343
TspDTI ATGAA 9 cut(s) 156, 338, 369, 371, 675, 676, 995, 1061, 1259
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 1488, 1587
Vha464I CTTAAG 1 cut(s) 1055
XagI CCTNNNNNAGG 1 cut(s) 1304
XapI RAATTY 1 cut(s) 1755
XceI RCATGY 5 cut(s) 16, 205, 801, 1512, 1594
XmiI GTMKAC 1 cut(s) 846
XspI CTAG 5 cut(s) 249, 471, 503, 554, 1266
ZrmI AGTACT 1 cut(s) 773
Zsp2I ATGCAT 1 cut(s) 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.